Published in Plant Physiol on November 11, 2009
Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation. Plant Cell (2011) 1.88
Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis. J Exp Bot (2013) 1.23
Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato. Nat Commun (2015) 1.16
TOMATOMA: a novel tomato mutant database distributing Micro-Tom mutant collections. Plant Cell Physiol (2011) 1.16
The R2R3-MYB transcription factor gene family in maize. PLoS One (2012) 1.13
Genome-wide association studies using single nucleotide polymorphism markers developed by re-sequencing of the genomes of cultivated tomato. DNA Res (2013) 1.09
Differential tomato transcriptomic responses induced by pepino mosaic virus isolates with differential aggressiveness. Plant Physiol (2011) 1.06
MetAlign 3.0: performance enhancement by efficient use of advances in computer hardware. Metabolomics (2011) 1.01
Three distinct mutational mechanisms acting on a single gene underpin the origin of yellow flesh in peach. Plant J (2013) 0.97
Identification of genes in the phenylalanine metabolic pathway by ectopic expression of a MYB transcription factor in tomato fruit. Plant Cell (2011) 0.95
Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza. BMC Genomics (2014) 0.92
Guidelines to use tomato in experiments with a controlled environment. Front Plant Sci (2014) 0.92
The anthocyanin reduced tomato mutant demonstrates the role of flavonols in tomato lateral root and root hair development. Plant Physiol (2014) 0.88
Coupling virus-induced gene silencing to exogenous green fluorescence protein expression provides a highly efficient system for functional genomics in Arabidopsis and across all stages of tomato fruit development. Plant Physiol (2011) 0.88
Isolation and characterization of GtMYBP3 and GtMYBP4, orthologues of R2R3-MYB transcription factors that regulate early flavonoid biosynthesis, in gentian flowers. J Exp Bot (2012) 0.86
Transcription factors, sucrose, and sucrose metabolic genes interact to regulate potato phenylpropanoid metabolism. J Exp Bot (2013) 0.85
Transient silencing of CHALCONE SYNTHASE during fruit ripening modifies tomato epidermal cells and cuticle properties. Plant Physiol (2014) 0.85
MdMYB1 Regulates Anthocyanin and Malate Accumulation by Directly Facilitating Their Transport into Vacuoles in Apples. Plant Physiol (2015) 0.84
A novel class of sticky peel and light green mutations causes cuticle deficiency in leaves and fruits of tomato (Solanum lycopersicum). Planta (2012) 0.84
Recent advances on the development and regulation of flower color in ornamental plants. Front Plant Sci (2015) 0.84
Small tandem target mimic-mediated blockage of microRNA858 induces anthocyanin accumulation in tomato. Planta (2015) 0.84
Recent advances in tomato functional genomics: utilization of VIGS. Protoplasma (2012) 0.82
Reduction of inositol (1,4,5)-trisphosphate affects the overall phosphoinositol pathway and leads to modifications in light signalling and secondary metabolism in tomato plants. J Exp Bot (2011) 0.82
Transcriptome Profiling of Tomato Fruit Development Reveals Transcription Factors Associated with Ascorbic Acid, Carotenoid and Flavonoid Biosynthesis. PLoS One (2015) 0.82
Transcriptomic Analysis Reveals Possible Influences of ABA on Secondary Metabolism of Pigments, Flavonoids and Antioxidants in Tomato Fruit during Ripening. PLoS One (2015) 0.82
Genome-wide analysis of tomato NF-Y factors and their role in fruit ripening. BMC Genomics (2016) 0.82
Transcriptional Activity of the MADS Box ARLEQUIN/TOMATO AGAMOUS-LIKE1 Gene Is Required for Cuticle Development of Tomato Fruit. Plant Physiol (2015) 0.81
The Glycerol-3-Phosphate Acyltransferase GPAT6 from Tomato Plays a Central Role in Fruit Cutin Biosynthesis. Plant Physiol (2016) 0.81
A simulation-based breeding design that uses whole-genome prediction in tomato. Sci Rep (2016) 0.80
Evolutionary developmental genetics of fruit morphological variation within the Solanaceae. Front Plant Sci (2015) 0.80
The Onion (Allium cepa L.) R2R3-MYB Gene MYB1 Regulates Anthocyanin Biosynthesis. Front Plant Sci (2016) 0.79
Genome-wide identification and characterization of R2R3MYB family in Solanum lycopersicum. Mol Genet Genomics (2014) 0.77
Genetic mapping of semi-polar metabolites in pepper fruits (Capsicum sp.): towards unravelling the molecular regulation of flavonoid quantitative trait loci. Mol Breed (2013) 0.77
Metabolic and Molecular Changes of the Phenylpropanoid Pathway in Tomato (Solanum lycopersicum) Lines Carrying Different Solanum pennellii Wild Chromosomal Regions. Front Plant Sci (2016) 0.76
Genome-Wide Identification of the Transcription Factors Involved in Citrus Fruit Ripening from the Transcriptomes of a Late-Ripening Sweet Orange Mutant and Its Wild Type. PLoS One (2016) 0.76
Glucose Sensor MdHXK1 Phosphorylates and Stabilizes MdbHLH3 to Promote Anthocyanin Biosynthesis in Apple. PLoS Genet (2016) 0.76
Identification of Loci Affecting Accumulation of Secondary Metabolites in Tomato Fruit of a Solanum lycopersicum × Solanum chmielewskii Introgression Line Population. Front Plant Sci (2016) 0.75
Characterization of a New Pink-Fruited Tomato Mutant Results in the Identification of a Null Allele of the SlMYB12 Transcription Factor. Plant Physiol (2016) 0.75
Silencing of the SlNAP7 gene influences plastid development and lycopene accumulation in tomato. Sci Rep (2016) 0.75
Tomato as a Source of Carotenoids and Polyphenols Targeted to Cancer Prevention. Cancers (Basel) (2016) 0.75
Transcriptome Profiling of Tomato Uncovers an Involvement of Cytochrome P450s and Peroxidases in Stigma Color Formation. Front Plant Sci (2017) 0.75
Fine Mapping of a Gene (ER4.1) that Causes Epidermal Reticulation of Tomato Fruit and Characterization of the Associated Transcriptome. Front Plant Sci (2017) 0.75
The dominant allele Aft induces a shift from flavonol to anthocyanin production in response to UV-B radiation in tomato fruit. Planta (2017) 0.75
Transcriptional profiling of catechins biosynthesis genes during tea plant leaf development. Planta (2017) 0.75
Highly effective, regiospecific reduction of chalcone by cyanobacteria leads to the formation of dihydrochalcone: two steps towards natural sweetness. Microb Cell Fact (2017) 0.75
A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J (1993) 19.68
Inheritance in Tomatoes. Genetics (1925) 8.74
Advances in flavonoid research since 1992. Phytochemistry (2000) 7.78
The R2R3-MYB gene family in Arabidopsis thaliana. Curr Opin Plant Biol (2001) 6.86
Virus-induced gene silencing in tomato. Plant J (2002) 5.55
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol Biol Evol (2003) 4.02
Polyphenols and disease risk in epidemiologic studies. Am J Clin Nutr (2005) 4.01
Transcriptional repression by AtMYB4 controls production of UV-protecting sunscreens in Arabidopsis. EMBO J (2000) 3.97
The genetics and biochemistry of floral pigments. Annu Rev Plant Biol (2006) 3.79
MYB-bHLH-WD40 protein complex and the evolution of cellular diversity. Trends Plant Sci (2005) 3.35
Comprehensive identification of Arabidopsis thaliana MYB transcription factors interacting with R/B-like BHLH proteins. Plant J (2004) 3.16
Retrotransposon-induced mutations in grape skin color. Science (2004) 3.16
Carotenoids and human health. Pharmacol Res (2007) 3.07
Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors. Nat Biotechnol (2008) 3.04
Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids. Plant J (2008) 3.04
The Arabidopsis transcription factor MYB12 is a flavonol-specific regulator of phenylpropanoid biosynthesis. Plant Physiol (2005) 2.74
Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling. Plant J (2007) 2.64
Overexpression of petunia chalcone isomerase in tomato results in fruit containing increased levels of flavonols. Nat Biotechnol (2001) 2.47
Tomato strigolactones are derived from carotenoids and their biosynthesis is promoted by phosphate starvation. New Phytol (2008) 2.37
A liquid chromatography-mass spectrometry-based metabolome database for tomato. Plant Physiol (2006) 2.08
Metabolite annotations based on the integration of mass spectral information. Plant J (2008) 1.97
High-flavonol tomatoes resulting from the heterologous expression of the maize transcription factor genes LC and C1. Plant Cell (2002) 1.90
Consumption of flavonoid-rich foods and increased plasma antioxidant capacity in humans: cause, consequence, or epiphenomenon? Free Radic Biol Med (2006) 1.85
Multiple repeats of a promoter segment causes transcription factor autoregulation in red apples. Plant Cell (2009) 1.78
AtMYB12 regulates caffeoyl quinic acid and flavonol synthesis in tomato: expression in fruit results in very high levels of both types of polyphenol. Plant J (2008) 1.73
The light-hyperresponsive high pigment-2dg mutation of tomato: alterations in the fruit metabolome. New Phytol (2005) 1.63
Development of a set of PCR-based anchor markers encompassing the tomato genome and evaluation of their usefulness for genetics and breeding experiments. Theor Appl Genet (2005) 1.59
Post-veraison sunlight exposure induces MYB-mediated transcriptional regulation of anthocyanin and flavonol synthesis in berry skins of Vitis vinifera. J Exp Bot (2009) 1.35
Modification of flavonoid biosynthesis in crop plants. Phytochemistry (2004) 1.33
Agroinjection of tomato fruits. A tool for rapid functional analysis of transgenes directly in fruit. Plant Physiol (2006) 1.33
Energy transfer reactions involving carotenoids: quenching of chlorophyll fluorescence. J Photochem Photobiol B (1996) 1.29
Metabolic engineering of flavonoids in tomato (Solanum lycopersicum): the potential for metabolomics. Metabolomics (2007) 1.29
RNA interference silencing of chalcone synthase, the first step in the flavonoid biosynthesis pathway, leads to parthenocarpic tomato fruits. Plant Physiol (2007) 1.22
Tomatoes versus lycopene in oxidative stress and carcinogenesis: conclusions from clinical trials. Eur J Clin Nutr (2006) 1.15
A visual reporter system for virus-induced gene silencing in tomato fruit based on anthocyanin accumulation. Plant Physiol (2009) 1.14
Sequence selectivity of c-Myb in vivo. Resolution of a DNA target specificity paradox. J Biol Chem (1999) 1.05
Nature, distribution and function of plant flavonoids. Prog Clin Biol Res (1986) 0.99
Purple as a tomato: towards high anthocyanin tomatoes. Trends Plant Sci (2009) 0.97
Plant polyphenols: how to translate their in vitro antioxidant actions to in vivo conditions. IUBMB Life (2007) 0.96
Genetic and physiological analysis of tomato fruit weight and composition: influence of carbon availability on QTL detection. J Exp Bot (2009) 0.96
An ortholog of MIXTA-like2 controls epidermal cell shape in flowers of Thalictrum. New Phytol (2009) 0.93
Utilization of the genetic resources of wild species to create a nontransgenic high flavonoid tomato. J Agric Food Chem (2005) 0.88
Characterization and inheritance of the Anthocyanin fruit (Aft) tomato. J Hered (2003) 0.87
Genome sequence and analysis of the tuber crop potato. Nature (2011) 7.77
MYB transcription factors in Arabidopsis. Trends Plant Sci (2010) 4.64
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol Biol Evol (2003) 4.02
Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors. Nat Biotechnol (2008) 3.04
SERRATE: a new player on the plant microRNA scene. EMBO Rep (2006) 2.78
A small family of MYB-regulatory genes controls floral pigmentation intensity and patterning in the genus Antirrhinum. Plant Cell (2006) 2.63
Engineering plants with increased levels of the antioxidant chlorogenic acid. Nat Biotechnol (2004) 2.19
An ancient R gene from the wild potato species Solanum bulbocastanum confers broad-spectrum resistance to Phytophthora infestans in cultivated potato and tomato. Plant J (2003) 2.16
Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. Plant Cell (2003) 2.15
Fleshy fruit expansion and ripening are regulated by the Tomato SHATTERPROOF gene TAGL1. Plant Cell (2009) 2.05
High-flavonol tomatoes resulting from the heterologous expression of the maize transcription factor genes LC and C1. Plant Cell (2002) 1.90
Analysis of the sucrose synthase gene family in Arabidopsis. Plant J (2007) 1.84
AtMYB12 regulates caffeoyl quinic acid and flavonol synthesis in tomato: expression in fruit results in very high levels of both types of polyphenol. Plant J (2008) 1.73
Anthocyanins double the shelf life of tomatoes by delaying overripening and reducing susceptibility to gray mold. Curr Biol (2013) 1.68
The light-hyperresponsive high pigment-2dg mutation of tomato: alterations in the fruit metabolome. New Phytol (2005) 1.63
The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL). Comp Funct Genomics (2005) 1.63
The impact of the absence of aliphatic glucosinolates on insect herbivory in Arabidopsis. PLoS One (2008) 1.53
Three isoforms of isoamylase contribute different catalytic properties for the debranching of potato glucans. Plant Cell (2003) 1.53
Retrotransposons control fruit-specific, cold-dependent accumulation of anthocyanins in blood oranges. Plant Cell (2012) 1.52
Control of cell and petal morphogenesis by R2R3 MYB transcription factors. Development (2007) 1.51
Fruit development and ripening. Annu Rev Plant Biol (2013) 1.49
Uniform ripening encodes a Golden 2-like transcription factor regulating tomato fruit chloroplast development. Science (2012) 1.46
Trichomes: different regulatory networks lead to convergent structures. Trends Plant Sci (2006) 1.45
Starch granule initiation is controlled by a heteromultimeric isoamylase in potato tubers. Proc Natl Acad Sci U S A (2004) 1.40
Convergent evolution in the BAHD family of acyl transferases: identification and characterization of anthocyanin acyl transferases from Arabidopsis thaliana. Plant J (2007) 1.39
GoldenBraid: an iterative cloning system for standardized assembly of reusable genetic modules. PLoS One (2011) 1.35
Cytosolic and plastoglobule-targeted carotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release. J Biol Chem (2008) 1.35
Agroinjection of tomato fruits. A tool for rapid functional analysis of transgenes directly in fruit. Plant Physiol (2006) 1.33
Chronic dietary intake of plant-derived anthocyanins protects the rat heart against ischemia-reperfusion injury. J Nutr (2008) 1.31
QTL detection for rice grain quality traits using an interspecific backcross population derived from cultivated Asian (O. sativa L.) and African (O. glaberrima S.) rice. Genome (2004) 1.29
Development of three different cell types is associated with the activity of a specific MYB transcription factor in the ventral petal of Antirrhinum majus flowers. Development (2004) 1.29
Antioxidants, phenolic compounds, and nutritional quality of different strawberry genotypes. J Agric Food Chem (2008) 1.27
Production of resveratrol in recombinant microorganisms. Appl Environ Microbiol (2006) 1.21
A novel polyamine acyltransferase responsible for the accumulation of spermidine conjugates in Arabidopsis seed. Plant Cell (2009) 1.19
Silencing of DELLA induces facultative parthenocarpy in tomato fruits. Plant J (2007) 1.19
Genetic analysis of strawberry fruit aroma and identification of O-methyltransferase FaOMT as the locus controlling natural variation in mesifurane content. Plant Physiol (2012) 1.17
Effect of the Colorless non-ripening mutation on cell wall biochemistry and gene expression during tomato fruit development and ripening. Plant Physiol (2004) 1.15
A visual reporter system for virus-induced gene silencing in tomato fruit based on anthocyanin accumulation. Plant Physiol (2009) 1.14
The temperature-dependent change in methylation of the Antirrhinum transposon Tam3 is controlled by the activity of its transposase. Plant Cell (2005) 1.13
Metabolic characterization of loci affecting sensory attributes in tomato allows an assessment of the influence of the levels of primary metabolites and volatile organic contents. J Exp Bot (2009) 1.11
Discrete forms of amylose are synthesized by isoforms of GBSSI in pea. Plant Cell (2002) 1.09
Novel hydroxycinnamoyl-coenzyme A quinate transferase genes from artichoke are involved in the synthesis of chlorogenic acid. Plant Physiol (2010) 1.09
Transgenic flavonoid tomato intake reduces C-reactive protein in human C-reactive protein transgenic mice more than wild-type tomato. J Nutr (2006) 1.08
Changes in antioxidant and metabolite profiles during production of tomato paste. J Agric Food Chem (2008) 1.08
Development of ChillPeach genomic tools and identification of cold-responsive genes in peach fruit. Plant Mol Biol (2008) 1.08
Role of granule-bound starch synthase in determination of amylopectin structure and starch granule morphology in potato. J Biol Chem (2002) 1.07
GoldenBraid 2.0: a comprehensive DNA assembly framework for plant synthetic biology. Plant Physiol (2013) 1.07
Dehydrin from citrus, which confers in vitro dehydration and freezing protection activity, is constitutive and highly expressed in the flavedo of fruit but responsive to cold and water stress in leaves. J Agric Food Chem (2004) 1.06
From QTL to candidate gene: genetical genomics of simple and complex traits in potato using a pooling strategy. BMC Genomics (2010) 1.05
Genetic screening identifies cyanogenesis-deficient mutants of Lotus japonicus and reveals enzymatic specificity in hydroxynitrile glucoside metabolism. Plant Cell (2010) 1.05
Convergent evolution within the genus Solanum: the specialised anther cone develops through alternative pathways. Gene (2004) 1.04
Ingestion of onion soup high in quercetin inhibits platelet aggregation and essential components of the collagen-stimulated platelet activation pathway in man: a pilot study. Br J Nutr (2006) 1.03
Tomato breeding in the genomics era: insights from a SNP array. BMC Genomics (2013) 1.02
pl-bol3, a complex allele of the anthocyanin regulatory pl1 locus that arose in a naturally occurring maize population. Plant J (2003) 1.01
Pathway engineering for healthy phytochemicals leading to the production of novel flavonoids in tomato fruit. Plant Biotechnol J (2006) 1.00
Comparative analysis of the volatile fraction of fruit juice from different Citrus species. PLoS One (2011) 1.00
Induction of lipid oxidation by polyunsaturated fatty acids of marine origin in small intestine of mice fed a high-fat diet. BMC Genomics (2009) 0.99
GLYCOALKALOID METABOLISM1 is required for steroidal alkaloid glycosylation and prevention of phytotoxicity in tomato. Plant Cell (2011) 0.99
Lack of detrimental effects of Bacillus thuringiensis Cry toxins on the insect predator Chrysoperla carnea: a toxicological, histopathological, and biochemical analysis. Appl Environ Microbiol (2006) 0.99
Metabolite and target transcript analyses during Crocus sativus stigma development. Phytochemistry (2009) 0.99
Identification of the gene encoding the alpha1,3-mannosyltransferase (ALG3) in Arabidopsis and characterization of downstream n-glycan processing. Plant Cell (2008) 0.98
Characterization of tomato Cycling Dof Factors reveals conserved and new functions in the control of flowering time and abiotic stress responses. J Exp Bot (2014) 0.98
Genetic analysis of metabolites in apple fruits indicates an mQTL hotspot for phenolic compounds on linkage group 16. J Exp Bot (2012) 0.96
Genetic and physiological analysis of tomato fruit weight and composition: influence of carbon availability on QTL detection. J Exp Bot (2009) 0.96
A fertilization-independent developmental program triggers partial fruit development and senescence processes in pistils of Arabidopsis. Plant Physiol (2010) 0.95
Manipulation and misconduct in the handling of image data. Plant Cell (2013) 0.93
An ortholog of MIXTA-like2 controls epidermal cell shape in flowers of Thalictrum. New Phytol (2009) 0.93
Tomato fruit photosynthesis is seemingly unimportant in primary metabolism and ripening but plays a considerable role in seed development. Plant Physiol (2011) 0.93
Peace, a MYB-like transcription factor, regulates petal pigmentation in flowering peach 'Genpei' bearing variegated and fully pigmented flowers. J Exp Bot (2014) 0.93
Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection. J Exp Bot (2013) 0.93
Structural and functional genomics of tomato. Int J Plant Genomics (2008) 0.92
Quantitative trait loci affecting reproductive phenology in peach. BMC Plant Biol (2014) 0.92
Non-smoky glycosyltransferase1 prevents the release of smoky aroma from tomato fruit. Plant Cell (2013) 0.92
A multisite gateway-based toolkit for targeted gene expression and hairpin RNA silencing in tomato fruits. Plant Biotechnol J (2009) 0.91
Characterization of Rhamnosidases from Lactobacillus plantarum and Lactobacillus acidophilus. Appl Environ Microbiol (2009) 0.89
Stress-induced biosynthesis of dicaffeoylquinic acids in globe artichoke. J Agric Food Chem (2008) 0.89
Metabolic engineering of geranic acid in maize to achieve fungal resistance is compromised by novel glycosylation patterns. Metab Eng (2011) 0.89
An integrative "omics" approach identifies new candidate genes to impact aroma volatiles in peach fruit. BMC Genomics (2013) 0.89
Genetic and genome-wide transcriptomic analyses identify co-regulation of oxidative response and hormone transcript abundance with vitamin C content in tomato fruit. BMC Genomics (2012) 0.88
A non-targeted approach unravels the volatile network in peach fruit. PLoS One (2012) 0.88
Transcription factors of Lotus: regulation of isoflavonoid biosynthesis requires coordinated changes in transcription factor activity. Plant Physiol (2012) 0.87
Transportomics: screening for substrates of ABC transporters in body fluids using vesicular transport assays. FASEB J (2011) 0.87
Dietary flavonoids from modified apple reduce inflammation markers and modulate gut microbiota in mice. J Nutr (2013) 0.87
Combinatorial Analysis of Secretory Immunoglobulin A (sIgA) Expression in Plants. Int J Mol Sci (2013) 0.86
Accumulation of anthocyanins in tomato skin extends shelf life. New Phytol (2013) 0.86
IT3F: a web-based tool for functional analysis of transcription factors in plants. Phytochemistry (2008) 0.86
Down-regulation of a single auxin efflux transport protein in tomato induces precocious fruit development. J Exp Bot (2012) 0.86
Quantitation of biogenic tetraamines in Arabidopsis thaliana. Anal Biochem (2009) 0.85
Analysis of genetically modified red-fleshed apples reveals effects on growth and consumer attributes. Plant Biotechnol J (2012) 0.85