Published in Mol Cell Proteomics on November 14, 2009
Axonal transcription factors signal retrogradely in lesioned peripheral nerve. EMBO J (2012) 1.77
Signaling to transcription networks in the neuronal retrograde injury response. Sci Signal (2010) 1.57
Mammalian target of rapamycin (mTOR) activation increases axonal growth capacity of injured peripheral nerves. J Biol Chem (2010) 1.52
Axon-soma communication in neuronal injury. Nat Rev Neurosci (2013) 1.31
Long-distance retrograde neurotrophic factor signalling in neurons. Nat Rev Neurosci (2013) 1.30
Subcellular communication through RNA transport and localized protein synthesis. Traffic (2010) 1.22
Axon regeneration genes identified by RNAi screening in C. elegans. J Neurosci (2014) 0.98
Label-free quantitative LC-MS proteomics of Alzheimer's disease and normally aged human brains. J Proteome Res (2012) 0.96
Regulation of protein levels in subcellular domains through mRNA transport and localized translation. Mol Cell Proteomics (2010) 0.89
The neuroimmunology of degeneration and regeneration in the peripheral nervous system. Neuroscience (2014) 0.85
Soluble axoplasm enriched from injured CNS axons reveals the early modulation of the actin cytoskeleton. PLoS One (2012) 0.82
Proteomic Analysis of Dynein-Interacting Proteins in Amyotrophic Lateral Sclerosis Synaptosomes Reveals Alterations in the RNA-Binding Protein Staufen1. Mol Cell Proteomics (2015) 0.80
Molecular and Cellular Mechanisms of Axonal Regeneration After Spinal Cord Injury. Mol Cell Proteomics (2015) 0.80
Neuroproteomics approaches to decipher neuronal regeneration and degeneration. Mol Cell Proteomics (2009) 0.79
Dynamics of Hippocampal Protein Expression During Long-term Spatial Memory Formation. Mol Cell Proteomics (2015) 0.78
Standardized Profiling of The Membrane-Enriched Proteome of Mouse Dorsal Root Ganglia (DRG) Provides Novel Insights Into Chronic Pain. Mol Cell Proteomics (2016) 0.77
Axoplasm isolation from rat sciatic nerve. J Vis Exp (2010) 0.77
Exploring novel paths towards protein signatures of chronic pain. Mol Pain (2016) 0.75
Self-propelling vesicles define glycolysis as the minimal energy machinery for neuronal transport. Nat Commun (2016) 0.75
P75 and phosphorylated c-Jun are differentially regulated in spinal motoneurons following axotomy in rats. Neural Regen Res (2012) 0.75
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc (2009) 137.99
Kinesin transports RNA: isolation and characterization of an RNA-transporting granule. Neuron (2004) 6.71
Neuropathic pain: a maladaptive response of the nervous system to damage. Annu Rev Neurosci (2009) 5.00
Axoplasmic importins enable retrograde injury signaling in lesioned nerve. Neuron (2003) 3.40
Vimentin-dependent spatial translocation of an activated MAP kinase in injured nerve. Neuron (2005) 3.09
Differential transport and local translation of cytoskeletal, injury-response, and neurodegeneration protein mRNAs in axons. J Neurosci (2005) 2.98
Technical, experimental, and biological variations in isobaric tags for relative and absolute quantitation (iTRAQ). J Proteome Res (2007) 2.59
Extracellular stimuli specifically regulate localized levels of individual neuronal mRNAs. J Cell Biol (2007) 2.54
A functional role for intra-axonal protein synthesis during axonal regeneration from adult sensory neurons. J Neurosci (2001) 2.48
Axonal protein synthesis and degradation are necessary for efficient growth cone regeneration. J Neurosci (2005) 2.42
Sunday Driver links axonal transport to damage signaling. J Cell Biol (2005) 2.29
Quantitative analysis of synaptic phosphorylation and protein expression. Mol Cell Proteomics (2007) 2.23
Characterization of an RNA granule from developing brain. Mol Cell Proteomics (2005) 2.07
Localized regulation of axonal RanGTPase controls retrograde injury signaling in peripheral nerve. Neuron (2008) 2.04
Statistical design of quantitative mass spectrometry-based proteomic experiments. J Proteome Res (2009) 2.02
Nerve injury signaling. Curr Opin Neurobiol (2008) 1.99
Evolutionary expansion and anatomical specialization of synapse proteome complexity. Nat Neurosci (2008) 1.91
Overcoming inhibition in the damaged spinal cord. J Neurotrauma (2006) 1.84
Sunday driver interacts with two distinct classes of axonal organelles. J Biol Chem (2009) 1.84
A statistical model for iTRAQ data analysis. J Proteome Res (2008) 1.67
Retrograde signaling in injured nerve--the axon reaction revisited. J Neurochem (2006) 1.60
Schwann cell to axon transfer of ribosomes: toward a novel understanding of the role of glia in the nervous system. J Neurosci (2008) 1.60
Vimentin binding to phosphorylated Erk sterically hinders enzymatic dephosphorylation of the kinase. J Mol Biol (2006) 1.57
RNA transport and localized protein synthesis in neurological disorders and neural repair. Dev Neurobiol (2007) 1.52
Message in a bottle: long-range retrograde signaling in the nervous system. Trends Cell Biol (2007) 1.50
Regulation of intrinsic neuronal properties for axon growth and regeneration. Prog Neurobiol (2006) 1.50
Axonal and presynaptic protein synthesis: new insights into the biology of the neuron. Trends Neurosci (2002) 1.35
Cryptic peripheral ribosomal domains distributed intermittently along mammalian myelinated axons. J Neurosci (2000) 1.35
Ribosomes in axons--scrounging from the neighbors? Trends Cell Biol (2009) 1.31
Retrograde signaling in axonal regeneration. Exp Neurol (2009) 1.30
Acute physiological response of mammalian central neurons to axotomy: ionic regulation and electrical activity. FASEB J (2004) 1.29
Overcoming inhibitors in myelin to promote axonal regeneration. J Neurol Sci (2005) 1.29
Retrograde axonal transport of JNK signaling molecules influence injury induced nuclear changes in p-c-Jun and ATF3 in adult rat sensory neurons. Mol Cell Neurosci (2005) 1.28
Shotgun proteomics in neuroscience. Neuron (2009) 1.13
Axoplasm isolation from peripheral nerve. Dev Neurobiol (2010) 1.11
Proteomic profiling of neuromas reveals alterations in protein composition and local protein synthesis in hyper-excitable nerves. Mol Pain (2008) 0.98
Methods for proteomics in neuroscience. Prog Brain Res (2006) 0.98
Differential proteomics reveals multiple components in retrogradely transported axoplasm after nerve injury. Mol Cell Proteomics (2004) 0.96
High throughput protein expression screening in the nervous system--needs and limitations. J Physiol (2006) 0.91
Proteomics of the injured rat sciatic nerve reveals protein expression dynamics during regeneration. Mol Cell Proteomics (2004) 0.91
Comparative proteomic profiling of membrane proteins in rat cerebellum, spinal cord, and sciatic nerve. J Proteome Res (2009) 0.90
Development of affinity columns for the removal of high-abundance proteins in cerebrospinal fluid. Biotechnol Appl Biochem (2009) 0.90
From snails to sciatic nerve: Retrograde injury signaling from axon to soma in lesioned neurons. J Neurobiol (2004) 0.87
Proteomic identification of a novel isoform of collapsin response mediator protein-2 in spinal nerves peripheral to dorsal root ganglia. Proteomics (2006) 0.85
Use of proteomics for the identification of novel drug targets in brain diseases. J Neurochem (2007) 0.79
WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development. Cell (2005) 8.86
The site-specific installation of methyl-lysine analogs into recombinant histones. Cell (2007) 4.22
Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini. Cell (2008) 4.00
Reporting protein identification data: the next generation of guidelines. Mol Cell Proteomics (2006) 3.50
An essential role for 14-3-3 proteins in brassinosteroid signal transduction in Arabidopsis. Dev Cell (2007) 3.46
Axoplasmic importins enable retrograde injury signaling in lesioned nerve. Neuron (2003) 3.40
Widespread protein aggregation as an inherent part of aging in C. elegans. PLoS Biol (2010) 3.36
Vimentin-dependent spatial translocation of an activated MAP kinase in injured nerve. Neuron (2005) 3.09
BSKs mediate signal transduction from the receptor kinase BRI1 in Arabidopsis. Science (2008) 3.04
Brassinosteroid signal transduction from cell-surface receptor kinases to nuclear transcription factors. Nat Cell Biol (2009) 2.76
Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species. PLoS Biol (2009) 2.67
O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry. Mol Cell Proteomics (2006) 2.67
Comprehensive identification of phosphorylation sites in postsynaptic density preparations. Mol Cell Proteomics (2006) 2.51
SIRT6 stabilizes DNA-dependent protein kinase at chromatin for DNA double-strand break repair. Aging (Albany NY) (2009) 2.50
A semisynthetic epitope for kinase substrates. Nat Methods (2007) 2.40
Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach. Mol Cell Proteomics (2014) 2.37
PP2A activates brassinosteroid-responsive gene expression and plant growth by dephosphorylating BZR1. Nat Cell Biol (2011) 2.28
Quantitative analysis of synaptic phosphorylation and protein expression. Mol Cell Proteomics (2007) 2.23
An unbiased cell morphology-based screen for new, biologically active small molecules. PLoS Biol (2005) 2.11
A transmembrane accessory subunit that modulates kainate-type glutamate receptors. Neuron (2009) 2.07
A Raf-induced allosteric transition of KSR stimulates phosphorylation of MEK. Nature (2011) 2.07
In-depth analysis of tandem mass spectrometry data from disparate instrument types. Mol Cell Proteomics (2008) 2.06
Localized regulation of axonal RanGTPase controls retrograde injury signaling in peripheral nerve. Neuron (2008) 2.04
Global identification and characterization of both O-GlcNAcylation and phosphorylation at the murine synapse. Mol Cell Proteomics (2012) 2.03
A heteromeric Texas coral snake toxin targets acid-sensing ion channels to produce pain. Nature (2011) 1.84
Cathepsin L in secretory vesicles functions as a prohormone-processing enzyme for production of the enkephalin peptide neurotransmitter. Proc Natl Acad Sci U S A (2003) 1.83
An antibiotic factory caught in action. Nat Struct Mol Biol (2004) 1.81
The mammalian retromer regulates transcytosis of the polymeric immunoglobulin receptor. Nat Cell Biol (2004) 1.80
CCM2 mediates death signaling by the TrkA receptor tyrosine kinase. Neuron (2009) 1.79
Axonal transcription factors signal retrogradely in lesioned peripheral nerve. EMBO J (2012) 1.77
Promiscuous aggregate-based inhibitors promote enzyme unfolding. J Med Chem (2009) 1.68
Three mechanisms assemble central nervous system nodes of Ranvier. Neuron (2013) 1.68
Ligand-induced internalization of the p75 neurotrophin receptor: a slow route to the signaling endosome. J Neurosci (2003) 1.63
Retrograde signaling in injured nerve--the axon reaction revisited. J Neurochem (2006) 1.60
Vimentin binding to phosphorylated Erk sterically hinders enzymatic dephosphorylation of the kinase. J Mol Biol (2006) 1.57
Signaling to transcription networks in the neuronal retrograde injury response. Sci Signal (2010) 1.57
Western blots versus selected reaction monitoring assays: time to turn the tables? Mol Cell Proteomics (2013) 1.57
Proteomic analysis of Schistosoma mansoni cercarial secretions. Mol Cell Proteomics (2005) 1.54
Polycomb repressive complex 2 is necessary for the normal site-specific O-GlcNAc distribution in mouse embryonic stem cells. Proc Natl Acad Sci U S A (2011) 1.53
Pkh-kinases control eisosome assembly and organization. EMBO J (2007) 1.52
Histone acetylation and deacetylation: identification of acetylation and methylation sites of HeLa histone H4 by mass spectrometry. Mol Cell Proteomics (2002) 1.52
Improving software performance for peptide electron transfer dissociation data analysis by implementation of charge state- and sequence-dependent scoring. Mol Cell Proteomics (2010) 1.50
Mycobacterium tuberculosis CYP125A1, a steroid C27 monooxygenase that detoxifies intracellularly generated cholest-4-en-3-one. Mol Microbiol (2010) 1.49
ADAM22, a Kv1 channel-interacting protein, recruits membrane-associated guanylate kinases to juxtaparanodes of myelinated axons. J Neurosci (2010) 1.47
A proteomics study of brassinosteroid response in Arabidopsis. Mol Cell Proteomics (2007) 1.46
The CDG1 kinase mediates brassinosteroid signal transduction from BRI1 receptor kinase to BSU1 phosphatase and GSK3-like kinase BIN2. Mol Cell (2011) 1.44
Proteomics studies of brassinosteroid signal transduction using prefractionation and two-dimensional DIGE. Mol Cell Proteomics (2008) 1.43
Mapping post-translational modifications of the histone variant MacroH2A1 using tandem mass spectrometry. Mol Cell Proteomics (2005) 1.38
Global kinetic analysis of proteolysis via quantitative targeted proteomics. Proc Natl Acad Sci U S A (2012) 1.36
A shared molecular mechanism underlies the human rasopathies Legius syndrome and Neurofibromatosis-1. Genes Dev (2012) 1.33
The 3A protein from multiple picornaviruses utilizes the golgi adaptor protein ACBD3 to recruit PI4KIIIβ. J Virol (2012) 1.32
Molecular constituents of neuronal AMPA receptors. J Cell Biol (2005) 1.31
Ribosomes in axons--scrounging from the neighbors? Trends Cell Biol (2009) 1.31
A data processing pipeline for mammalian proteome dynamics studies using stable isotope metabolic labeling. Mol Cell Proteomics (2011) 1.31
Affinity enrichment and characterization of mucin core-1 type glycopeptides from bovine serum. Mol Cell Proteomics (2009) 1.30
Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry. Proc Natl Acad Sci U S A (2004) 1.30
Quantitative analysis of both protein expression and serine / threonine post-translational modifications through stable isotope labeling with dithiothreitol. Proteomics (2005) 1.30
Retrograde signaling in axonal regeneration. Exp Neurol (2009) 1.30
Subcellular knockout of importin β1 perturbs axonal retrograde signaling. Neuron (2012) 1.28
Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides. Mol Cell Proteomics (2009) 1.27
Identification of a novel chromosomal passenger complex and its unique localization during cytokinesis in Trypanosoma brucei. PLoS One (2008) 1.26
A kinase cascade leading to Rab11-FIP5 controls transcytosis of the polymeric immunoglobulin receptor. Nat Cell Biol (2010) 1.25
Quantitative encoding of the effect of a partial agonist on individual opioid receptors by multisite phosphorylation and threshold detection. Sci Signal (2011) 1.25
Differential use of protease families for invasion by schistosome cercariae. Biochimie (2007) 1.24
Structure of the mediator head module bound to the carboxy-terminal domain of RNA polymerase II. Proc Natl Acad Sci U S A (2012) 1.23
Subcellular communication through RNA transport and localized protein synthesis. Traffic (2010) 1.22
Chemical genetic identification of NDR1/2 kinase substrates AAK1 and Rabin8 Uncovers their roles in dendrite arborization and spine development. Neuron (2012) 1.22
N- and O-glycosylation in the murine synaptosome. Mol Cell Proteomics (2013) 1.21
Neurotransmitter release regulated by a MALS-liprin-alpha presynaptic complex. J Cell Biol (2005) 1.21
Ran on tracks--cytoplasmic roles for a nuclear regulator. J Cell Sci (2009) 1.21
Global cellular response to chemotherapy-induced apoptosis. Elife (2013) 1.19
Primary contact sites in intrinsically unstructured proteins: the case of calpastatin and microtubule-associated protein 2. Biochemistry (2005) 1.17
Arabidopsis PPR40 connects abiotic stress responses to mitochondrial electron transport. Plant Physiol (2008) 1.17
Two distinct coactivators, DRIP/mediator and SRC/p160, are differentially involved in vitamin D receptor transactivation during keratinocyte differentiation. Mol Endocrinol (2003) 1.17
Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces. J Am Chem Soc (2006) 1.17
Glucose sensor O-GlcNAcylation coordinates with phosphorylation to regulate circadian clock. Cell Metab (2013) 1.16
Proteomic analysis of skin invasion by blood fluke larvae. PLoS Negl Trop Dis (2008) 1.16
Plant L10 ribosomal proteins have different roles during development and translation under ultraviolet-B stress. Plant Physiol (2010) 1.16
Histone acetylation and chromatin remodeling are required for UV-B-dependent transcriptional activation of regulated genes in maize. Plant Cell (2008) 1.16
Inhibition of cathepsin B reduces beta-amyloid production in regulated secretory vesicles of neuronal chromaffin cells: evidence for cathepsin B as a candidate beta-secretase of Alzheimer's disease. Biol Chem (2005) 1.16
Global identification of peptidase specificity by multiplex substrate profiling. Nat Methods (2012) 1.14
Phosphorylation of phytochrome B inhibits light-induced signaling via accelerated dark reversion in Arabidopsis. Plant Cell (2013) 1.13
The p75 neurotrophin receptor interacts with multiple MAGE proteins. J Biol Chem (2002) 1.13
Axoplasm isolation from peripheral nerve. Dev Neurobiol (2010) 1.11
Chemical genetic approach for kinase-substrate mapping by covalent capture of thiophosphopeptides and analysis by mass spectrometry. Curr Protoc Chem Biol (2010) 1.09
The Met-Tyr-Trp cross-link in Mycobacterium tuberculosis catalase-peroxidase (KatG): autocatalytic formation and effect on enzyme catalysis and spectroscopic properties. J Biol Chem (2005) 1.08
Isoniazid-resistance conferring mutations in Mycobacterium tuberculosis KatG: catalase, peroxidase, and INH-NADH adduct formation activities. Protein Sci (2010) 1.08
Proteomics: current techniques and potential applications to lung disease. Am J Physiol Lung Cell Mol Physiol (2004) 1.08
HDL antielastase activity prevents smooth muscle cell anoikis, a potential new antiatherogenic property. FASEB J (2009) 1.08
Investigating the quantitative nature of MALDI-TOF MS. Mol Cell Proteomics (2008) 1.07