Published in Environ Microbiol on February 03, 2010
Metagenomic analyses: past and future trends. Appl Environ Microbiol (2010) 2.21
Diversity, physiology, and niche differentiation of ammonia-oxidizing archaea. Appl Environ Microbiol (2012) 1.77
Enrichment and characterization of an autotrophic ammonia-oxidizing archaeon of mesophilic crenarchaeal group I.1a from an agricultural soil. Appl Environ Microbiol (2011) 1.41
Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage. ISME J (2010) 1.33
Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea). ISME J (2011) 1.28
Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning. ISME J (2011) 1.19
Seasonality and resource availability control bacterial and archaeal communities in soils of a temperate beech forest. ISME J (2010) 1.17
Trace metal requirements for microbial enzymes involved in the production and consumption of methane and nitrous oxide. Front Microbiol (2012) 1.09
Intergenomic comparisons highlight modularity of the denitrification pathway and underpin the importance of community structure for N2O emissions. PLoS One (2014) 1.05
Aerobic nitrous oxide production through N-nitrosating hybrid formation in ammonia-oxidizing archaea. ISME J (2014) 1.00
Revision of N2O-producing pathways in the ammonia-oxidizing bacterium Nitrosomonas europaea ATCC 19718. Appl Environ Microbiol (2014) 1.00
Functional genes to assess nitrogen cycling and aromatic hydrocarbon degradation: primers and processing matter. Front Microbiol (2013) 0.99
Diversity, abundance and expression of nitrite reductase (nirK)-like genes in marine thaumarchaea. ISME J (2012) 0.98
Ecophysiology of an ammonia-oxidizing archaeon adapted to low-salinity habitats. Microb Ecol (2012) 0.97
Diversity and abundance of ammonia-oxidizing prokaryotes in sediments from the coastal Pearl River estuary to the South China Sea. Antonie Van Leeuwenhoek (2011) 0.95
Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota. ISME J (2016) 0.94
Surprising prokaryotic and eukaryotic diversity, community structure and biogeography of Ethiopian soda lakes. PLoS One (2013) 0.92
Metagenomic analysis of ammonia-oxidizing archaea affiliated with the soil group. Front Microbiol (2012) 0.90
Higher diversity and abundance of denitrifying microorganisms in environments than considered previously. ISME J (2015) 0.90
Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres. PLoS One (2014) 0.88
Impacts of bioturbation on temporal variation in bacterial and archaeal nitrogen-cycling gene abundance in coastal sediments. Environ Microbiol Rep (2013) 0.85
Synthetic biology approaches to improve biocatalyst identification in metagenomic library screening. Microb Biotechnol (2014) 0.84
Effects of repeated application of sulfadiazine-contaminated pig manure on the abundance and diversity of ammonia and nitrite oxidizers in the root-rhizosphere complex of pasture plants under field conditions. Front Microbiol (2013) 0.83
Phylogenetic diversity and ecological pattern of ammonia-oxidizing archaea in the surface sediments of the western Pacific. Microb Ecol (2011) 0.83
Discovery of new protein families and functions: new challenges in functional metagenomics for biotechnologies and microbial ecology. Front Microbiol (2015) 0.82
Molecular tools for the detection of nitrogen cycling Archaea. Archaea (2013) 0.81
Microbiology of nitrogen cycle in animal manure compost. Microb Biotechnol (2011) 0.81
A mesophilic, autotrophic, ammonia-oxidizing archaeon of thaumarchaeal group I.1a cultivated from a deep oligotrophic soil horizon. Appl Environ Microbiol (2014) 0.80
High rates of denitrification and nitrous oxide emission in arid biological soil crusts from the Sultanate of Oman. ISME J (2013) 0.80
Effect of sulfadiazine-contaminated pig manure on the abundances of genes and transcripts involved in nitrogen transformation in the root-rhizosphere complexes of maize and clover. Appl Environ Microbiol (2010) 0.78
Comparison of Nitrogen Oxide Metabolism among Diverse Ammonia-Oxidizing Bacteria. Front Microbiol (2016) 0.75
Environmental and microbial factors influencing methane and nitrous oxide fluxes in Mediterranean cork oak woodlands: trees make a difference. Front Microbiol (2015) 0.75
Design and evaluation of primers targeting genes encoding NO-forming nitrite reductases: implications for ecological inference of denitrifying communities. Sci Rep (2016) 0.75
Ecology of Nitrogen Fixing, Nitrifying, and Denitrifying Microorganisms in Tropical Forest Soils. Front Microbiol (2016) 0.75
Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers. Proc Natl Acad Sci U S A (2016) 0.75
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature (2009) 15.06
Removing noise from pyrosequenced amplicons. BMC Bioinformatics (2011) 13.45
Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics (2013) 6.62
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci (2010) 6.39
The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010. Stand Genomic Sci (2010) 6.30
Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota. PLoS Biol (2006) 5.77
Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol (2005) 5.32
Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome. PLoS One (2008) 4.54
The Genomic Standards Consortium. PLoS Biol (2011) 3.99
Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proc Natl Acad Sci U S A (2006) 3.85
Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs. Stand Genomic Sci (2010) 3.58
The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea. J Mol Microbiol Biotechnol (2002) 3.53
The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ Microbiol (2008) 3.34
Complete genome sequence of Kytococcus sedentarius type strain (541). Stand Genomic Sci (2009) 3.30
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc Natl Acad Sci U S A (2011) 3.25
The DNA bank network: the start from a german initiative. Biopreserv Biobank (2011) 3.23
Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ Microbiol (2003) 3.08
The genome sequence of the extreme thermophile Thermus thermophilus. Nat Biotechnol (2004) 2.95
Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota. Trends Microbiol (2010) 2.84
Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms. Environ Microbiol (2008) 2.68
Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics. Mol Microbiol (2003) 2.65
Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment. Environ Microbiol (2008) 2.56
Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons. Int J Syst Evol Microbiol (2010) 2.50
In vivo activity of CRISPR-mediated virus defence in a hyperthermophilic archaeon. Mol Microbiol (2011) 2.35
The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. J Bacteriol (2005) 2.31
The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology. Curr Opin Microbiol (2011) 2.14
Characterization of large-insert DNA libraries from soil for environmental genomic studies of Archaea. Environ Microbiol (2004) 2.02
Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene. FEMS Microbiol Ecol (2009) 2.02
The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea. ISME J (2009) 2.00
Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil. Proc Natl Acad Sci U S A (2011) 1.98
Complete genome sequence of Meiothermus ruber type strain (21). Stand Genomic Sci (2010) 1.96
Autotrophic ammonia oxidation by soil thaumarchaea. Proc Natl Acad Sci U S A (2010) 1.89
Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3). Stand Genomic Sci (2009) 1.82
Dynamics and functional relevance of ammonia-oxidizing archaea in two agricultural soils. Environ Microbiol (2009) 1.78
Divergent transcriptional and translational signals in Archaea. Environ Microbiol (2005) 1.76
Niche specialization of terrestrial archaeal ammonia oxidizers. Proc Natl Acad Sci U S A (2011) 1.72
Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms. ISME J (2011) 1.71
UV-inducible DNA exchange in hyperthermophilic archaea mediated by type IV pili. Mol Microbiol (2011) 1.71
A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T. Environ Microbiol (2010) 1.70
Ammonia-oxidising Crenarchaeota: important players in the nitrogen cycle? Trends Microbiol (2006) 1.69
Archaea rather than bacteria control nitrification in two agricultural acidic soils. FEMS Microbiol Ecol (2010) 1.61
Complex nitrogen cycling in the sponge Geodia barretti. Environ Microbiol (2009) 1.61
Ammonia-oxidising archaea--physiology, ecology and evolution. Adv Microb Physiol (2010) 1.57
When should a DDH experiment be mandatory in microbial taxonomy? Arch Microbiol (2013) 1.56
Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation. Trends Microbiol (2012) 1.55
A reporter gene system for the hyperthermophilic archaeon Sulfolobus solfataricus based on a selectable and integrative shuttle vector. Mol Microbiol (2003) 1.48
Response of the hyperthermophilic archaeon Sulfolobus solfataricus to UV damage. J Bacteriol (2007) 1.46
Nitrification in terrestrial hot springs of Iceland and Kamchatka. FEMS Microbiol Ecol (2008) 1.44
Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis. ISME J (2012) 1.43
The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations. Environ Microbiol (2012) 1.42
Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen. Nat Commun (2013) 1.40
Diversity of Archaea in hypersaline environments characterized by molecular-phylogenetic and cultivation studies. Extremophiles (2002) 1.40
Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics. PLoS One (2012) 1.39
Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge. Proc Natl Acad Sci U S A (2012) 1.37
Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age. Int J Syst Evol Microbiol (2014) 1.37
UV-inducible cellular aggregation of the hyperthermophilic archaeon Sulfolobus solfataricus is mediated by pili formation. Mol Microbiol (2008) 1.35
Phylogeny-driven target selection for large-scale genome-sequencing (and other) projects. Stand Genomic Sci (2013) 1.35
Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255). Stand Genomic Sci (2009) 1.34
Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community. Environ Microbiol (2012) 1.32
Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment. Appl Environ Microbiol (2010) 1.32
Complete genome sequence of Spirosoma linguale type strain (1). Stand Genomic Sci (2010) 1.32
Archaea in biogeochemical cycles. Annu Rev Microbiol (2013) 1.31
opm: an R package for analysing OmniLog(R) phenotype microarray data. Bioinformatics (2013) 1.30
Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism. Environ Microbiol (2009) 1.27
Links between ammonia oxidizer community structure, abundance, and nitrification potential in acidic soils. Appl Environ Microbiol (2011) 1.26
Description of Dietzia lutea sp. nov., isolated from a desert soil in Egypt. Syst Appl Microbiol (2009) 1.24
Regulation of expression of the arabinose and glucose transporter genes in the thermophilic archaeon Sulfolobus solfataricus. Extremophiles (2006) 1.24
The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C. Archaea (2007) 1.22
Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034). Stand Genomic Sci (2010) 1.21
First insight into the genome of an uncultivated crenarchaeote from soil. Environ Microbiol (2002) 1.20
Genomics of aerobic cellulose utilization systems in actinobacteria. PLoS One (2012) 1.20
Differential photoinhibition of bacterial and archaeal ammonia oxidation. FEMS Microbiol Lett (2011) 1.19
Elucidating the transcription cycle of the UV-inducible hyperthermophilic archaeal virus SSV1 by DNA microarrays. Virology (2007) 1.18
Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10). Stand Genomic Sci (2009) 1.17
Reconstruction of the central carbohydrate metabolism of Thermoproteus tenax by use of genomic and biochemical data. J Bacteriol (2004) 1.17
Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway. Environ Microbiol (2006) 1.16
Complete genome sequence of Segniliparus rotundus type strain (CDC 1076). Stand Genomic Sci (2010) 1.15
Survey of 150 strains belonging to the Mycobacterium terrae complex and description of Mycobacterium engbaekii sp. nov., Mycobacterium heraklionense sp. nov. and Mycobacterium longobardum sp. nov. Int J Syst Evol Microbiol (2012) 1.14
Complete genome sequence of Atopobium parvulum type strain (IPP 1246). Stand Genomic Sci (2009) 1.14
Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. Environ Microbiol (2009) 1.14
Integrated metagenomic and metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments. Environ Microbiol (2012) 1.13
Complete genome sequence of Cryptobacterium curtum type strain (12-3). Stand Genomic Sci (2009) 1.12
Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microorganisms. Environ Microbiol (2005) 1.11
Novel insights into the diversity of catabolic metabolism from ten haloarchaeal genomes. PLoS One (2011) 1.11
Complete genome sequence of Streptosporangium roseum type strain (NI 9100). Stand Genomic Sci (2010) 1.10
Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota. FEMS Microbiol Ecol (2009) 1.09
Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845). Stand Genomic Sci (2011) 1.08
Complete genome sequence of Saccharomonospora viridis type strain (P101). Stand Genomic Sci (2009) 1.07
Resource quality affects carbon cycling in deep-sea sediments. ISME J (2012) 1.07
Complete genome sequence of Haloterrigena turkmenica type strain (4k). Stand Genomic Sci (2010) 1.06
Ammonia-oxidizing archaea as main drivers of nitrification in cold-water sponges. Environ Microbiol (2011) 1.06
Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21). Stand Genomic Sci (2011) 1.06
Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia-oxidizing archaea. ISME J (2013) 1.06
Effects of aboveground grazing on coupling among nitrifier activity, abundance and community structure. ISME J (2007) 1.06
Complete genome sequence of Serratia plymuthica strain AS12. Stand Genomic Sci (2012) 1.05
Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta. Stand Genomic Sci (2012) 1.05
Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1). Stand Genomic Sci (2009) 1.04