Published in Proc Natl Acad Sci U S A on December 08, 2011
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Novel PCR primers for the archaeal phylum Thaumarchaeota designed based on the comparative analysis of 16S rRNA gene sequences. PLoS One (2014) 1.39
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Differential contributions of ammonia oxidizers and nitrite oxidizers to nitrification in four paddy soils. ISME J (2014) 0.92
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Hadal biosphere: insight into the microbial ecosystem in the deepest ocean on Earth. Proc Natl Acad Sci U S A (2015) 0.90
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Characterisation of terrestrial acidophilic archaeal ammonia oxidisers and their inhibition and stimulation by organic compounds. FEMS Microbiol Ecol (2014) 0.87
Spatial distribution and factors shaping the niche segregation of ammonia-oxidizing microorganisms in the Qiantang River, China. Appl Environ Microbiol (2013) 0.86
The large-scale distribution of ammonia oxidizers in paddy soils is driven by soil pH, geographic distance, and climatic factors. Front Microbiol (2015) 0.84
Impacts of edaphic factors on communities of ammonia-oxidizing archaea, ammonia-oxidizing bacteria and nitrification in tropical soils. PLoS One (2014) 0.83
Ammonia-oxidising bacteria not archaea dominate nitrification activity in semi-arid agricultural soil. Sci Rep (2015) 0.83
Interactions between Thaumarchaea, Nitrospira and methanotrophs modulate autotrophic nitrification in volcanic grassland soil. ISME J (2014) 0.83
A review of ammonia-oxidizing bacteria and archaea in Chinese soils. Front Microbiol (2012) 0.83
Latitudinal distribution of ammonia-oxidizing bacteria and archaea in the agricultural soils of eastern China. Appl Environ Microbiol (2014) 0.83
Isolation of 'Candidatus Nitrosocosmicus franklandus', a novel ureolytic soil archaeal ammonia oxidiser with tolerance to high ammonia concentration. FEMS Microbiol Ecol (2016) 0.83
Archaeal dominated ammonia-oxidizing communities in Icelandic grassland soils are moderately affected by long-term N fertilization and geothermal heating. Front Microbiol (2012) 0.82
pH as a Driver for Ammonia-Oxidizing Archaea in Forest Soils. Microb Ecol (2014) 0.82
Inhibitory effects of C2 to C10 1-alkynes on ammonia oxidation in two Nitrososphaera species. Appl Environ Microbiol (2015) 0.81
Phylogenetically distinct phylotypes modulate nitrification in a paddy soil. Appl Environ Microbiol (2015) 0.81
Microbial diversity in a Venezuelan orthoquartzite cave is dominated by the Chloroflexi (Class Ktedonobacterales) and Thaumarchaeota Group I.1c. Front Microbiol (2014) 0.81
Different land use intensities in grassland ecosystems drive ecology of microbial communities involved in nitrogen turnover in soil. PLoS One (2013) 0.81
Response of ammonia-oxidizing archaea and bacteria to long-term industrial effluent-polluted soils, Gujarat, Western India. Environ Monit Assess (2014) 0.81
Benthic ammonia oxidizers differ in community structure and biogeochemical potential across a riverine delta. Front Microbiol (2015) 0.80
Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota. Proc Natl Acad Sci U S A (2015) 0.80
Environmental factors shaping the community structure of ammonia-oxidizing bacteria and archaea in sugarcane field soil. Microbes Environ (2014) 0.79
Seasonal effects in a lake sediment archaeal community of the Brazilian Savanna. Archaea (2014) 0.79
Global biogeography of microbial nitrogen-cycling traits in soil. Proc Natl Acad Sci U S A (2016) 0.78
The ecology of bacterial genes and the survival of the new. Int J Evol Biol (2012) 0.78
Bacteria of the candidate phylum TM7 are prevalent in acidophilic nitrifying sequencing-batch reactors. Microbes Environ (2014) 0.78
Emergent macrophytes act selectively on ammonia-oxidizing bacteria and archaea. Appl Environ Microbiol (2012) 0.77
Identifying Potential Mechanisms Enabling Acidophily in the Ammonia-Oxidizing Archaeon "Candidatus Nitrosotalea devanaterra". Appl Environ Microbiol (2016) 0.77
Abundance and diversity of archaeal accA gene in hot springs in Yunnan Province, China. Extremophiles (2013) 0.77
Environmental Variables Shaping the Ecological Niche of Thaumarchaeota in Soil: Direct and Indirect Causal Effects. PLoS One (2015) 0.76
Species, Abundance and Function of Ammonia-oxidizing Archaea in Inland Waters across China. Sci Rep (2015) 0.76
Active ammonia oxidizers in an acidic soil are phylogenetically closely related to neutrophilic archaeon. Appl Environ Microbiol (2013) 0.76
Diversity and abundance of ammonia oxidizing archaea in tropical compost systems. Front Microbiol (2012) 0.76
Distribution and Niche Separation of Planktonic Microbial Communities in the Water Columns from the Surface to the Hadal Waters of the Japan Trench under the Eutrophic Ocean. Front Microbiol (2016) 0.75
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Impact of short-term acidification on nitrification and nitrifying bacterial community dynamics in soilless cultivation media. Appl Environ Microbiol (2012) 0.75
Spatial distribution patterns of ammonia-oxidizing archaea abundance in subtropical forests at early and late successional stages. Sci Rep (2015) 0.75
Microsite Differentiation Drives the Abundance of Soil Ammonia Oxidizing Bacteria along Aridity Gradients. Front Microbiol (2016) 0.75
Effects of the application of digestates from wet and dry anaerobic fermentation to Japanese paddy and upland soils on short-term nitrification. Microbes Environ (2015) 0.75
Responses of soil hydrolytic enzymes, ammonia-oxidizing bacteria and archaea to nitrogen applications in a temperate grassland in Inner Mongolia. Sci Rep (2016) 0.75
Ammonia-Oxidizing Archaea Are More Resistant Than Denitrifiers to Seasonal Precipitation Changes in an Acidic Subtropical Forest Soil. Front Microbiol (2017) 0.75
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Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol (2009) 12.34
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Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science (2005) 9.75
Estimating prokaryotic diversity and its limits. Proc Natl Acad Sci U S A (2002) 9.61
Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science (2003) 6.42
Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota. PLoS Biol (2006) 5.77
Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol (2005) 5.32
Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol (2008) 5.31
Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature (2009) 4.84
Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing. BMC Genomics (2011) 4.39
Examining the global distribution of dominant archaeal populations in soil. ISME J (2010) 4.24
Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS One (2011) 4.04
A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring. Proc Natl Acad Sci U S A (2008) 3.76
Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol. Environ Microbiol (2008) 3.65
The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ Microbiol (2008) 3.34
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc Natl Acad Sci U S A (2011) 3.25
Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil. Environ Microbiol (2009) 3.13
Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota. Trends Microbiol (2010) 2.84
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Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene. FEMS Microbiol Ecol (2009) 2.02
Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil. Proc Natl Acad Sci U S A (2011) 1.98
Autotrophic ammonia oxidation by soil thaumarchaea. Proc Natl Acad Sci U S A (2010) 1.89
Dynamics and functional relevance of ammonia-oxidizing archaea in two agricultural soils. Environ Microbiol (2009) 1.78
Changes in land use alter the structure of bacterial communities in Western Amazon soils. ISME J (2009) 1.72
Biogeography of soil archaea and bacteria along a steep precipitation gradient. ISME J (2009) 1.72
Comparison of Nitrosospira strains isolated from terrestrial environments. FEMS Microbiol Ecol (1999) 1.71
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Archaea rather than bacteria control nitrification in two agricultural acidic soils. FEMS Microbiol Ecol (2010) 1.61
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Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes. Proc Biol Sci (2010) 1.22
Biogeography and landscape-scale diversity of the dominant Crenarchaeota of soil. Microb Ecol (2006) 1.15
UCHIME improves sensitivity and speed of chimera detection. Bioinformatics (2011) 29.22
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proc Natl Acad Sci U S A (2010) 7.09
Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Stand Genomic Sci (2010) 4.70
A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104:H4. JAMA (2013) 3.49
The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ Microbiol (2008) 3.34
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc Natl Acad Sci U S A (2011) 3.25
RNA stable isotope probing, a novel means of linking microbial community function to phylogeny. Appl Environ Microbiol (2002) 2.88
The ecological coherence of high bacterial taxonomic ranks. Nat Rev Microbiol (2010) 2.80
Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms. Environ Microbiol (2008) 2.68
Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment. Environ Microbiol (2008) 2.56
The bacterial biogeography of British soils. Environ Microbiol (2011) 2.39
Influence of freeze-thaw stress on the structure and function of microbial communities and denitrifying populations in soil. Appl Environ Microbiol (2006) 2.28
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Plant host habitat and root exudates shape soil bacterial community structure. ISME J (2008) 2.15
Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section. Gut (2013) 2.04
Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene. FEMS Microbiol Ecol (2009) 2.02
Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment. ISME J (2009) 1.98
Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil. Proc Natl Acad Sci U S A (2011) 1.98
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Autotrophic ammonia oxidation by soil thaumarchaea. Proc Natl Acad Sci U S A (2010) 1.89
Identification of active methylotroph populations in an acidic forest soil by stable-isotope probing. Microbiology (2002) 1.85
Dynamics and functional relevance of ammonia-oxidizing archaea in two agricultural soils. Environ Microbiol (2009) 1.78
Changes in the community structure and activity of betaproteobacterial ammonia-oxidizing sediment bacteria along a freshwater-marine gradient. Environ Microbiol (2006) 1.72
Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms. ISME J (2011) 1.71
Costs and outcomes among hemodialysis-dependent patients with methicillin-resistant or methicillin-susceptible Staphylococcus aureus bacteremia. Infect Control Hosp Epidemiol (2005) 1.69
An observational study of outcomes after initial infused therapy in Medicare patients diagnosed with chronic lymphocytic leukemia. Blood (2010) 1.67
Cerebral sympathetic nerve activity has a major regulatory role in the cerebral circulation in REM sleep. J Appl Physiol (1985) (2009) 1.66
Diversity and dynamics of rare and of resident bacterial populations in coastal sands. ISME J (2011) 1.63
Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities. Environ Microbiol (2013) 1.62
Local adaptation of bacteriophages to their bacterial hosts in soil. Science (2009) 1.62
Archaea rather than bacteria control nitrification in two agricultural acidic soils. FEMS Microbiol Ecol (2010) 1.61
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Maintenance of soil functioning following erosion of microbial diversity. Environ Microbiol (2006) 1.58
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Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation. Trends Microbiol (2012) 1.55
Primary succession of soil Crenarchaeota across a receding glacier foreland. Environ Microbiol (2005) 1.55
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The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function. Appl Environ Microbiol (2003) 1.50
Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets. Nucleic Acids Res (2010) 1.49
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Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces. BMC Biol (2009) 1.45
Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis. ISME J (2012) 1.43
Raman microscopic analysis of single microbial cells. Anal Chem (2004) 1.42
Diversity of fungi in organic soils under a moorland--Scots pine (Pinus sylvestris L.) gradient. Environ Microbiol (2003) 1.42
Rhizosphere communities of genetically modified zeaxanthin-accumulating potato plants and their parent cultivar differ less than those of different potato cultivars. Appl Environ Microbiol (2009) 1.40
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Testing the limits of 454 pyrotag sequencing: reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes. PLoS One (2012) 1.35
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Staphylococcus aureus bacteremia in patients with prosthetic devices: costs and outcomes. Am J Med (2005) 1.23
Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP. FEMS Microbiol Ecol (2011) 1.22
Biodiversity at multiple trophic levels is needed for ecosystem multifunctionality. Nature (2016) 1.21
Diversity of transcripts of nitrite reductase genes (nirK and nirS) in rhizospheres of grain legumes. Appl Environ Microbiol (2005) 1.21
Correlation of methane production and functional gene transcriptional activity in a peat soil. Appl Environ Microbiol (2009) 1.21
PhyloChip hybridization uncovered an enormous bacterial diversity in the rhizosphere of different potato cultivars: many common and few cultivar-dependent taxa. FEMS Microbiol Ecol (2011) 1.20
Effects of management regime and plant species on the enzyme activity and genetic structure of N-fixing, denitrifying and nitrifying bacterial communities in grassland soils. Environ Microbiol (2006) 1.20
Differential photoinhibition of bacterial and archaeal ammonia oxidation. FEMS Microbiol Lett (2011) 1.19
A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity. PLoS One (2012) 1.17
Spatial analysis of archaeal community structure in grassland soil. Appl Environ Microbiol (2003) 1.17
Altitude ammonia-oxidizing bacteria and archaea in soils of Mount Everest. FEMS Microbiol Ecol (2009) 1.17
A new method for the detection of alkane-monooxygenase homologous genes (alkB) in soils based on PCR-hybridization. J Microbiol Methods (2006) 1.16
Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway. Environ Microbiol (2006) 1.16
Crenarchaeal community assembly and microdiversity in developing soils at two sites associated with deglaciation. Environ Microbiol (2006) 1.16
Sympathetic nerve activity in the superior cervical ganglia increases in response to imposed increases in arterial pressure. Am J Physiol Regul Integr Comp Physiol (2008) 1.15
Vegetation affects the relative abundances of dominant soil bacterial taxa and soil respiration rates in an upland grassland soil. Microb Ecol (2009) 1.14
Genetic diversity and phylogenetic relationships of bacteria belonging to the Ochrobactrum-Brucella group by recA and 16S rRNA gene-based comparative sequence analysis. Syst Appl Microbiol (2008) 1.14
Benchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes. Brief Bioinform (2012) 1.13
Genetic and phenotypic microdiversity of Ochrobactrum spp. FEMS Microbiol Ecol (2006) 1.13
Microbial colonization of beech and spruce litter--influence of decomposition site and plant litter species on the diversity of microbial community. Microb Ecol (2006) 1.13
Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microorganisms. Environ Microbiol (2005) 1.11
Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing. FEMS Microbiol Ecol (2012) 1.11
Influence of inorganic nitrogen management regime on the diversity of nitrite-oxidizing bacteria in agricultural grassland soils. Appl Environ Microbiol (2005) 1.10
RNA fingerprinting--a new method to screen for differences in plant litter degrading microbial communities. J Microbiol Methods (2004) 1.09
Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota. FEMS Microbiol Ecol (2009) 1.09