Published in J Proteome Res on May 07, 2010
Quantification of mRNA and protein and integration with protein turnover in a bacterium. Mol Syst Biol (2011) 2.31
Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle. PLoS One (2012) 1.21
Proteome dynamics: revisiting turnover with a global perspective. Mol Cell Proteomics (2012) 1.10
Determining degradation and synthesis rates of arabidopsis proteins using the kinetics of progressive 15N labeling of two-dimensional gel-separated protein spots. Mol Cell Proteomics (2012) 0.93
Rapid temporal dynamics of transcription, protein synthesis, and secretion during macrophage activation. Mol Cell Proteomics (2014) 0.93
Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles. BMC Syst Biol (2011) 0.88
Type of noise defines global attractors in bistable molecular regulatory systems. J Theor Biol (2012) 0.85
SILACtor: software to enable dynamic SILAC studies. Anal Chem (2011) 0.84
A large dataset of protein dynamics in the mammalian heart proteome. Sci Data (2016) 0.83
A novel pulse-chase SILAC strategy measures changes in protein decay and synthesis rates induced by perturbation of proteostasis with an Hsp90 inhibitor. PLoS One (2013) 0.82
Protein turnover quantification in a multilabeling approach: from data calculation to evaluation. Mol Cell Proteomics (2012) 0.81
Multiple-platform data integration method with application to combined analysis of microarray and proteomic data. BMC Bioinformatics (2012) 0.81
Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria. Microb Biotechnol (2013) 0.81
Mitochondrial protein turnover: methods to measure turnover rates on a large scale. J Mol Cell Cardiol (2014) 0.80
Toggle switch: noise determines the winning gene. Phys Biol (2013) 0.80
Monitoring newly synthesized proteins over the adult life span of Caenorhabditis elegans. J Proteome Res (2015) 0.79
Drivers of Bacterial Maintenance and Minimal Energy Requirements. Front Microbiol (2017) 0.76
An Internal Standard-Assisted Synthesis and Degradation Proteomic Approach Reveals the Potential Linkage between VPS4B Depletion and Activation of Fatty Acid β-Oxidation in Breast Cancer Cells. Int J Proteomics (2013) 0.76
Chaos and Hyperchaos in a Model of Ribosome Autocatalytic Synthesis. Sci Rep (2016) 0.75
Time-resolved Analysis of Proteome Dynamics by Tandem Mass Tags and Stable Isotope Labeling in Cell Culture (TMT-SILAC) Hyperplexing. Mol Cell Proteomics (2016) 0.75
Incompatibility of chemical protein synthesis inhibitors with accurate measurement of extended protein degradation rates. Pharmacol Res Perspect (2017) 0.75
Insulin signalling to mTOR mediated by the Akt/PKB substrate PRAS40. Nat Cell Biol (2007) 8.07
Multipotent adult progenitor cells from bone marrow differentiate into functional hepatocyte-like cells. J Clin Invest (2002) 3.90
PRR5, a novel component of mTOR complex 2, regulates platelet-derived growth factor receptor beta expression and signaling. J Biol Chem (2007) 2.25
Oxidative stress and covalent modification of protein with bioactive aldehydes. J Biol Chem (2008) 2.09
Carbonylation of adipose proteins in obesity and insulin resistance: identification of adipocyte fatty acid-binding protein as a cellular target of 4-hydroxynonenal. Mol Cell Proteomics (2007) 1.84
Selection against undifferentiated human embryonic stem cells by a cytotoxic antibody recognizing podocalyxin-like protein-1. Stem Cells (2008) 1.83
A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies. Proteomics (2013) 1.78
A kinetic model of quantitative real-time polymerase chain reaction. Biotechnol Bioeng (2005) 1.75
Systematic comparison of the human saliva and plasma proteomes. Proteomics Clin Appl (2009) 1.51
Identification of carbonylated proteins from enriched rat skeletal muscle mitochondria using affinity chromatography-stable isotope labeling and tandem mass spectrometry. Proteomics (2007) 1.47
Uncovering genes with divergent mRNA-protein dynamics in Streptomyces coelicolor. PLoS One (2008) 1.46
A study of monoclonal antibody-producing CHO cell lines: what makes a stable high producer? Biotechnol Bioeng (2009) 1.45
A dynamic range compression and three-dimensional peptide fractionation analysis platform expands proteome coverage and the diagnostic potential of whole saliva. J Proteome Res (2009) 1.42
Comparative transcriptome analysis of embryonic and adult stem cells with extended and limited differentiation capacity. Genome Biol (2007) 1.41
Improved development of human embryonic stem cell-derived embryoid bodies by stirred vessel cultivation. Biotechnol Bioeng (2006) 1.40
Engineering cell metabolism for high-density cell culture via manipulation of sugar transport. J Biotechnol (2007) 1.34
Structural polarity and functional bile canaliculi in rat hepatocyte spheroids. Exp Cell Res (2002) 1.33
A catalogue of human saliva proteins identified by free flow electrophoresis-based peptide separation and tandem mass spectrometry. Mol Cell Proteomics (2005) 1.30
Convergent transcription confers a bistable switch in Enterococcus faecalis conjugation. Proc Natl Acad Sci U S A (2011) 1.30
Proteome analysis of low-abundance proteins using multidimensional chromatography and isotope-coded affinity tags. J Proteome Res (2003) 1.28
Mechanisms of protein stabilization and prevention of protein aggregation by glycerol. Biochemistry (2009) 1.28
Growth cones turn and migrate up an immobilized gradient of the laminin IKVAV peptide. J Neurobiol (2005) 1.26
Proteomic mapping of 4-hydroxynonenal protein modification sites by solid-phase hydrazide chemistry and mass spectrometry. Anal Chem (2007) 1.23
Endothelium-mediated hepatocyte recruitment in the establishment of liver-like tissue in vitro. Tissue Eng (2006) 1.23
Culture systems for pluripotent stem cells. J Biosci Bioeng (2005) 1.19
Proteomics analysis of cells in whole saliva from oral cancer patients via value-added three-dimensional peptide fractionation and tandem mass spectrometry. Mol Cell Proteomics (2007) 1.19
Combined in silico modeling and metabolomics analysis to characterize fed-batch CHO cell culture. Biotechnol Bioeng (2012) 1.17
Defined conditions for development of functional hepatic cells from human embryonic stem cells. Stem Cells Dev (2005) 1.16
FGF-2 modulates Wnt signaling in undifferentiated hESC and iPS cells through activated PI3-K/GSK3beta signaling. J Cell Physiol (2010) 1.14
Quantitative proteomic profiling of muscle type-dependent and age-dependent protein carbonylation in rat skeletal muscle mitochondria. J Gerontol A Biol Sci Med Sci (2008) 1.13
Genome-wide transcriptome analysis reveals that a pleiotropic antibiotic regulator, AfsS, modulates nutritional stress response in Streptomyces coelicolor A3(2). BMC Genomics (2008) 1.12
Gel-free mass spectrometry-based high throughput proteomics: tools for studying biological response of proteins and proteomes. Proteomics (2006) 1.12
SH3BP4 is a negative regulator of amino acid-Rag GTPase-mTORC1 signaling. Mol Cell (2012) 1.11
An auxin surge following fertilization in carrots: a mechanism for regulating plant totipotency. Planta (2002) 1.11
Trade-off between high sensitivity and increased potential for false positive peptide sequence matches using a two-dimensional linear ion trap for tandem mass spectrometry-based proteomics. J Proteome Res (2006) 1.10
Maximizing interferon-gamma production by Chinese hamster ovary cells through temperature shift optimization: experimental and modeling. Biotechnol Bioeng (2004) 1.09
A diffusion-reaction model for DNA microarray assays. J Biotechnol (2004) 1.07
Tweaking biological switches through a better understanding of bistability behavior. Curr Opin Biotechnol (2008) 1.06
A framework to analyze multiple time series data: a case study with Streptomyces coelicolor. J Ind Microbiol Biotechnol (2005) 1.05
Transcriptome and proteome profiling to understanding the biology of high productivity CHO cells. Mol Biotechnol (2006) 1.05
Direct binding of PP2A to Sprouty2 and phosphorylation changes are a prerequisite for ERK inhibition downstream of fibroblast growth factor receptor stimulation. J Biol Chem (2007) 1.05
Deep metaproteomic analysis of human salivary supernatant. Proteomics (2012) 1.04
Systems analysis of N-glycan processing in mammalian cells. PLoS One (2007) 1.03
Antagonistic self-sensing and mate-sensing signaling controls antibiotic-resistance transfer. Proc Natl Acad Sci U S A (2013) 1.03
Transcriptional response of Escherichia coli to temperature shift. Biotechnol Prog (2005) 1.03
Transcriptome and proteome analysis of Chinese hamster ovary cells under low temperature and butyrate treatment. J Biotechnol (2009) 1.03
Comparative genomic hybridizations reveal absence of large Streptomyces coelicolor genomic islands in Streptomyces lividans. BMC Genomics (2007) 1.02
Non-linear reduction for kinetic models of metabolic reaction networks. Metab Eng (2004) 1.02
Advances in quantitative proteomics using stable isotope tags. Trends Biotechnol (2002) 1.01
Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor. Nucleic Acids Res (2007) 1.00
On metabolic shift to lactate consumption in fed-batch culture of mammalian cells. Metab Eng (2012) 0.99
Fedbatch culture and dynamic nutrient feeding. Adv Biochem Eng Biotechnol (2006) 0.99
Human embryonic and rat adult stem cells with primitive endoderm-like phenotype can be fated to definitive endoderm, and finally hepatocyte-like cells. PLoS One (2010) 0.99
Engineering mammalian cells in bioprocessing - current achievements and future perspectives. Biotechnol Appl Biochem (2010) 0.99
Three-dimensional co-culture of hepatocytes and stellate cells. Cytotechnology (2004) 0.98
A detailed understanding of the enhanced hypothermic productivity of interferon-gamma by Chinese-hamster ovary cells. Biotechnol Appl Biochem (2005) 0.98
IRES-mediated Tricistronic vectors for enhancing generation of high monoclonal antibody expressing CHO cell lines. J Biotechnol (2011) 0.97
Analysis of cellular metabolism of hybridoma cells at distinct physiological states. J Biosci Bioeng (2003) 0.97
Genomic and proteomic exploration of CHO and hybridoma cells under sodium butyrate treatment. Biotechnol Bioeng (2008) 0.97
A bistable gene switch for antibiotic biosynthesis: the butyrolactone regulon in Streptomyces coelicolor. PLoS One (2008) 0.97
Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions. PLoS One (2010) 0.97
In pursuit of a super producer-alternative paths to high producing recombinant mammalian cells. Curr Opin Biotechnol (2007) 0.96
Mining manufacturing data for discovery of high productivity process characteristics. J Biotechnol (2010) 0.96
Reaching the depth of the Chinese hamster ovary cell transcriptome. Biotechnol Bioeng (2010) 0.96
Conserved microRNAs in Chinese hamster ovary cell lines. Biotechnol Bioeng (2011) 0.95
Hsf1 activation inhibits rapamycin resistance and TOR signaling in yeast revealed by combined proteomic and genetic analysis. PLoS One (2008) 0.95
An analysis of the use of genomic DNA as a universal reference in two channel DNA microarrays. BMC Genomics (2005) 0.94
Mass spectrometric identification of phosphorylation sites in guanylyl cyclase A and B. Biochemistry (2010) 0.94
Effects of overexpression of X-box binding protein 1 on recombinant protein production in Chinese hamster ovary and NS0 myeloma cells. Biotechnol Bioeng (2008) 0.94
Isolation and characterization of a novel population of progenitor cells from unmanipulated rat liver. Liver Transpl (2008) 0.94
Mining bioprocess data: opportunities and challenges. Trends Biotechnol (2008) 0.94
Preparative peptide isoelectric focusing as a tool for improving the identification of lysine-acetylated peptides from complex mixtures. J Proteome Res (2007) 0.93
Spheroid culture for enhanced differentiation of human embryonic stem cells to hepatocyte-like cells. Stem Cells Dev (2013) 0.93
Protein carbonylation and adipocyte mitochondrial function. J Biol Chem (2012) 0.93
Quantitative nuclear proteomics identifies mTOR regulation of DNA damage response. Mol Cell Proteomics (2009) 0.93
Deletion of the signalling molecule synthase ScbA has pleiotropic effects on secondary metabolite biosynthesis, morphological differentiation and primary metabolism in Streptomyces coelicolor A3(2). Microb Biotechnol (2010) 0.93
Molecular portrait of high productivity in recombinant NS0 cells. Biotechnol Bioeng (2007) 0.93
Application of destabilizing sequences on selection marker for improved recombinant protein productivity in CHO-DG44. Metab Eng (2007) 0.92
Glucose metabolism in mammalian cell culture: new insights for tweaking vintage pathways. Trends Biotechnol (2010) 0.92
Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations. BMC Genomics (2014) 0.92
DNA methylation contributes to loss in productivity of monoclonal antibody-producing CHO cell lines. J Biotechnol (2010) 0.92
Hexapeptide libraries for enhanced protein PTM identification and relative abundance profiling in whole human saliva. J Proteome Res (2011) 0.91
Activation of hypoxic response in human embryonic stem cell-derived embryoid bodies. Exp Biol Med (Maywood) (2008) 0.91
Large-scale phosphoproteomics analysis of whole saliva reveals a distinct phosphorylation pattern. J Proteome Res (2011) 0.91
Large scale gene expression profiling of metabolic shift of mammalian cells in culture. J Biotechnol (2004) 0.91
Biofilm growth alters regulation of conjugation by a bacterial pheromone. Mol Microbiol (2011) 0.91
Engineering cells for cell culture bioprocessing--physiological fundamentals. Adv Biochem Eng Biotechnol (2006) 0.91
Isolation procedure and characterization of multipotent adult progenitor cells from rat bone marrow. Methods Mol Biol (2010) 0.90
EST sequencing for gene discovery in Chinese hamster ovary cells. Biotechnol Bioeng (2005) 0.90
Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework. J Proteome Res (2014) 0.90
High-density transient gene expression in suspension-adapted 293 EBNA1 cells. Biotechnol Bioeng (2008) 0.89
Advancing mammalian cell culture engineering using genome-scale technologies. Trends Biotechnol (2007) 0.89