Published in BMC Genomics on March 03, 2010
miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments. Nucleic Acids Res (2011) 2.25
Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing. BMC Plant Biol (2011) 2.01
Deep sequencing-based transcriptome profiling analysis of bacteria-challenged Lateolabrax japonicus reveals insight into the immune-relevant genes in marine fish. BMC Genomics (2010) 1.60
Analysis of plant-derived miRNAs in animal small RNA datasets. BMC Genomics (2012) 1.52
Draft genome sequence of the mulberry tree Morus notabilis. Nat Commun (2013) 1.38
Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa. Genome Biol (2011) 1.31
Genomic sequence around butterfly wing development genes: annotation and comparative analysis. PLoS One (2011) 1.15
Insect microRNAs: biogenesis, expression profiling and biological functions. Insect Biochem Mol Biol (2012) 1.15
Transcriptome characterization of the South African abalone Haliotis midae using sequencing-by-synthesis. BMC Res Notes (2011) 1.07
Identification of novel and differentially expressed MicroRNAs of dairy goat mammary gland tissues using solexa sequencing and bioinformatics. PLoS One (2012) 1.06
Deep sequencing of organ- and stage-specific microRNAs in the evolutionarily basal insect Blattella germanica (L.) (Dictyoptera, Blattellidae). PLoS One (2011) 1.06
Solexa sequencing identification of conserved and novel microRNAs in backfat of Large White and Chinese Meishan pigs. PLoS One (2012) 1.06
Evolution of the let-7 microRNA family. RNA Biol (2012) 0.97
MicroRNA expression profiling of the fifth-instar posterior silk gland of Bombyx mori. BMC Genomics (2014) 0.96
Discovery and profiling of novel and conserved microRNAs during flower development in Carya cathayensis via deep sequencing. Planta (2012) 0.95
Characterisation and expression of microRNAs in developing wings of the neotropical butterfly Heliconius melpomene. BMC Genomics (2011) 0.95
Differential miRNA expression in Rehmannia glutinosa plants subjected to continuous cropping. BMC Plant Biol (2011) 0.94
Identification of microRNAs in Helicoverpa armigera and Spodoptera litura based on deep sequencing and homology analysis. Int J Biol Sci (2012) 0.92
Identification and characterization of microRNAs in pearl oyster Pinctada martensii by Solexa deep sequencing. Mar Biotechnol (NY) (2013) 0.90
Involvement of microRNAs in infection of silkworm with bombyx mori cytoplasmic polyhedrosis virus (BmCPV). PLoS One (2013) 0.87
Characterization and comparative analysis of small RNAs in three small RNA libraries of the brown planthopper (Nilaparvata lugens). PLoS One (2012) 0.87
Structure, evolution and function of the bi-directionally transcribed iab-4/iab-8 microRNA locus in arthropods. Nucleic Acids Res (2013) 0.84
Characterization and comparative profiling of MicroRNAs in a sexual dimorphism insect, Eupolyphaga sinensis Walker. PLoS One (2013) 0.83
Identification, expression and target gene analyses of Micrornas in Spodoptera litura. PLoS One (2012) 0.83
RIP-seq of BmAgo2-associated small RNAs reveal various types of small non-coding RNAs in the silkworm, Bombyx mori. BMC Genomics (2013) 0.81
High-throughput sequencing of small RNAs from pollen and silk and characterization of miRNAs as candidate factors involved in pollen-silk interactions in maize. PLoS One (2013) 0.81
A Burst of miRNA Innovation in the Early Evolution of Butterflies and Moths. Mol Biol Evol (2015) 0.81
microRNA expression profile of peripheral blood mononuclear cells of Klinefelter syndrome. Exp Ther Med (2012) 0.79
Development and immunity-related microRNAs of the lepidopteran model host Galleria mellonella. BMC Genomics (2014) 0.78
Target Gene and Function Prediction of Differentially Expressed MicroRNAs in Lactating Mammary Glands of Dairy Goats. Int J Genomics (2013) 0.78
Characterization and comparative profiling of miRNAs in invasive Bemisia tabaci (Gennadius) B and Q. PLoS One (2013) 0.78
Systematic Identification and Characterization of Long Non-Coding RNAs in the Silkworm, Bombyx mori. PLoS One (2016) 0.78
Identification of microRNAs in the Toxigenic Dinoflagellate Alexandrium catenella by High-Throughput Illumina Sequencing and Bioinformatic Analysis. PLoS One (2015) 0.77
Construction and detection of expression vectors of microRNA-9a in BmN cells. J Zhejiang Univ Sci B (2011) 0.77
Transcriptome/degradome-wide identification of R. glutinosa miRNAs and their targets: the role of miRNA activity in the replanting disease. PLoS One (2013) 0.77
MiR-2 family targets awd and fng to regulate wing morphogenesis in Bombyx mori. RNA Biol (2015) 0.76
Identification and characterization of microRNAs in small brown planthopper (Laodephax striatellus) by next-generation sequencing. PLoS One (2014) 0.76
Composition and genomic organization of arthropod Hox clusters. Evodevo (2016) 0.75
De novo characterization of microRNAs in oriental fruit moth Grapholita molesta and selection of reference genes for normalization of microRNA expression. PLoS One (2017) 0.75
Overview of research on Bombyx mori microRNA. J Insect Sci (2014) 0.75
Identification and characterization of microRNAs expressed in the African malaria vector Anopheles funestus life stages using high throughput sequencing. Malar J (2016) 0.75
BmncRNAdb: a comprehensive database of non-coding RNAs in the silkworm, Bombyx mori. BMC Bioinformatics (2016) 0.75
Fine Mapping of a Degenerated Abdominal Legs Mutant (Edl) in Silkworm, Bombyx mori. PLoS One (2017) 0.75
Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res (2003) 77.89
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res (2002) 76.95
SOAP: short oligonucleotide alignment program. Bioinformatics (2008) 68.13
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell (1993) 64.62
miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res (2006) 39.25
miRBase: tools for microRNA genomics. Nucleic Acids Res (2007) 38.61
MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet (2004) 37.83
A mammalian microRNA expression atlas based on small RNA library sequencing. Cell (2007) 34.03
The microRNA Registry. Nucleic Acids Res (2004) 29.45
Asymmetry in the assembly of the RNAi enzyme complex. Cell (2003) 22.18
The widespread impact of mammalian MicroRNAs on mRNA repression and evolution. Science (2005) 20.51
Functional siRNAs and miRNAs exhibit strand bias. Cell (2003) 19.15
NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res (2008) 17.35
Identification of hundreds of conserved and nonconserved human microRNAs. Nat Genet (2005) 15.96
Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution. Cell (2005) 15.38
Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell (2006) 15.12
Targeted deletion reveals essential and overlapping functions of the miR-17 through 92 family of miRNA clusters. Cell (2008) 12.29
Intronic microRNA precursors that bypass Drosha processing. Nature (2007) 9.65
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. Genome Res (2007) 9.61
RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res (2006) 7.39
A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science (2004) 6.62
Diversity of microRNAs in human and chimpanzee brain. Nat Genet (2006) 6.57
Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing. Methods (2008) 6.22
Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis. Genome Res (2006) 5.23
A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes Dev (2007) 4.95
miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature (2007) 4.72
Micro RNAs in animal development. Cell (2006) 4.37
A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach. Genome Res (2008) 3.74
The genetics and genomics of the silkworm, Bombyx mori. Annu Rev Entomol (2005) 2.92
The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint. J Exp Zool B Mol Dev Evol (2006) 2.63
SilkDB: a knowledgebase for silkworm biology and genomics. Nucleic Acids Res (2005) 2.50
A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands. Genes Dev (2008) 2.45
Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci. Genes Dev (2008) 2.35
Microarray-based gene expression profiles in multiple tissues of the domesticated silkworm, Bombyx mori. Genome Biol (2007) 2.21
MicroRNAs in the Drosophila bithorax complex. Genes Dev (2008) 1.99
Assumed initiation site of fibroin gene transcription. Proc Natl Acad Sci U S A (1979) 1.52
The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages. PLoS One (2008) 1.48
The Caenorhabditis chemoreceptor gene families. BMC Biol (2008) 1.44
EndoPDI, a novel protein-disulfide isomerase-like protein that is preferentially expressed in endothelial cells acts as a stress survival factor. J Biol Chem (2003) 1.44
Virus-encoded microRNAs: novel regulators of gene expression. Trends Microbiol (2006) 1.36
Retracted MicroRNA expression profiling during the life cycle of the silkworm (Bombyx mori). BMC Genomics (2009) 1.35
Characterization and expression patterns of let-7 microRNA in the silkworm (Bombyx mori). BMC Dev Biol (2007) 1.32
Small non-coding RNAs in Streptomyces coelicolor. Nucleic Acids Res (2008) 1.31
MicroRNAs show diverse and dynamic expression patterns in multiple tissues of Bombyx mori. BMC Genomics (2010) 1.15
Identification and characteristics of microRNAs from Bombyx mori. BMC Genomics (2008) 1.14
The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway. Nucleic Acids Res (2007) 1.07
MiRTif: a support vector machine-based microRNA target interaction filter. BMC Bioinformatics (2008) 1.07
Differential expression of mimecan and thioredoxin domain-containing protein 5 in colorectal adenoma and cancer: a proteomic study. Exp Biol Med (Maywood) (2007) 1.07
Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system. Insect Biochem Mol Biol (2008) 1.02
Developmental switches of sericin mRNA splicing in individual cells of Bombyx mori silkgland. Dev Biol (1987) 0.97
Computational prediction of microRNA genes in silkworm genome. J Zhejiang Univ Sci B (2006) 0.96
Identification and characterization of a novel sericin gene expressed in the anterior middle silk gland of the silkworm Bombyx mori. Insect Biochem Mol Biol (2007) 0.92
A discovery of novel microRNAs in the silkworm (Bombyx mori) genome. Genomics (2009) 0.90
Temporal and spatial control of silk gene transcription analyzed by nuclear run-on assays. Dev Biol (1988) 0.86
Differentiation of the silk gland. A model system for the study of differential gene action. Results Probl Cell Differ (1977) 0.80
Localization of the genes for silk fibroin in silk gland cells of Bombyx mori. Dev Biol (1976) 0.77
The diploid genome sequence of an Asian individual. Nature (2008) 46.29
Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases. Cell Res (2008) 20.59
International network of cancer genome projects. Nature (2010) 20.35
The sequence and de novo assembly of the giant panda genome. Nature (2009) 15.76
A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science (2004) 6.62
Building the sequence map of the human pan-genome. Nat Biotechnol (2009) 5.53
Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants. Nat Genet (2010) 5.44
The incidences and mortalities of major cancers in China, 2009. Chin J Cancer (2013) 5.17
Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell (2012) 5.16
A genome-wide association study identifies a new ovarian cancer susceptibility locus on 9p22.2. Nat Genet (2009) 4.38
The DNA methylome of human peripheral blood mononuclear cells. PLoS Biol (2010) 4.25
Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet (2010) 4.06
Acetylation targets the M2 isoform of pyruvate kinase for degradation through chaperone-mediated autophagy and promotes tumor growth. Mol Cell (2011) 3.78
Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature (2013) 3.40
Inheritance of stress-induced, ATF-2-dependent epigenetic change. Cell (2011) 3.39
Increased regulatory T cells correlate with CD8 T-cell impairment and poor survival in hepatocellular carcinoma patients. Gastroenterology (2007) 3.34
Material properties of the cell dictate stress-induced spreading and differentiation in embryonic stem cells. Nat Mater (2009) 3.30
[Trend analysis and projection of cancer incidence in China between 1989 and 2008]. Zhonghua Zhong Liu Za Zhi (2012) 3.15
Intracellular MHC class II molecules promote TLR-triggered innate immune responses by maintaining activation of the kinase Btk. Nat Immunol (2011) 3.12
[Trend analysis of cancer mortality in China between 1989 and 2008]. Zhonghua Zhong Liu Za Zhi (2012) 3.10
miR-214 targets ATF4 to inhibit bone formation. Nat Med (2012) 3.01
Report of incidence and mortality in China cancer registries, 2009. Chin J Cancer Res (2013) 2.88
Draft genome of the wheat A-genome progenitor Triticum urartu. Nature (2013) 2.86
Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx). Science (2009) 2.68
SilkDB: a knowledgebase for silkworm biology and genomics. Nucleic Acids Res (2005) 2.50
SilkDB v2.0: a platform for silkworm (Bombyx mori ) genome biology. Nucleic Acids Res (2009) 2.45
CCL2/CCR2 pathway mediates recruitment of myeloid suppressor cells to cancers. Cancer Lett (2007) 2.43
MicroRNA-21 directly targets MARCKS and promotes apoptosis resistance and invasion in prostate cancer cells. Biochem Biophys Res Commun (2009) 2.39
Antimicrobial nanomaterials for water disinfection and microbial control: potential applications and implications. Water Res (2008) 2.23
Microarray-based gene expression profiles in multiple tissues of the domesticated silkworm, Bombyx mori. Genome Biol (2007) 2.21
IL-17-producing alveolar macrophages mediate allergic lung inflammation related to asthma. J Immunol (2008) 2.17
Inducible microRNA-155 feedback promotes type I IFN signaling in antiviral innate immunity by targeting suppressor of cytokine signaling 1. J Immunol (2010) 2.12
Fibrocystin/polyductin modulates renal tubular formation by regulating polycystin-2 expression and function. J Am Soc Nephrol (2008) 2.04
Single base-resolution methylome of the silkworm reveals a sparse epigenomic map. Nat Biotechnol (2010) 2.03
miR-142-3p restricts cAMP production in CD4+CD25- T cells and CD4+CD25+ TREG cells by targeting AC9 mRNA. EMBO Rep (2008) 1.96
Local accumulation of FOXP3+ regulatory T cells: evidence for an immune evasion mechanism in patients with large condylomata acuminata. J Immunol (2008) 1.83
Identification and characterization of novel amphioxus microRNAs by Solexa sequencing. Genome Biol (2009) 1.82
Human papillomavirus infection and bladder cancer risk: a meta-analysis. J Infect Dis (2011) 1.81
Highly efficient and specific genome editing in silkworm using custom TALENs. PLoS One (2012) 1.80
miR-126 and miR-126* repress recruitment of mesenchymal stem cells and inflammatory monocytes to inhibit breast cancer metastasis. Nat Cell Biol (2013) 1.79
MicroRNA-148/152 impair innate response and antigen presentation of TLR-triggered dendritic cells by targeting CaMKIIα. J Immunol (2010) 1.77
MicroRNA-466l upregulates IL-10 expression in TLR-triggered macrophages by antagonizing RNA-binding protein tristetraprolin-mediated IL-10 mRNA degradation. J Immunol (2010) 1.74
The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions. PLoS One (2010) 1.71
Overexpression of annexin 1 in pancreatic cancer and its clinical significance. World J Gastroenterol (2004) 1.65
Deficiency of FLCN in mouse kidney led to development of polycystic kidneys and renal neoplasia. PLoS One (2008) 1.64
Effect of statin treatment on coronary plaque progression - a serial coronary CT angiography study. Atherosclerosis (2013) 1.64
Mutations in PDGFRB cause autosomal-dominant infantile myofibromatosis. Am J Hum Genet (2013) 1.63
SCF-mediated mast cell infiltration and activation exacerbate the inflammation and immunosuppression in tumor microenvironment. Blood (2008) 1.63
Hepatitis B virus X protein sensitizes cells to starvation-induced autophagy via up-regulation of beclin 1 expression. Hepatology (2009) 1.62
High-efficiency induction of neural conversion in human ESCs and human induced pluripotent stem cells with a single chemical inhibitor of transforming growth factor beta superfamily receptors. Stem Cells (2010) 1.61
Vegetable and fruit intake and non-Hodgkin lymphoma survival in Connecticut women. Leuk Lymphoma (2010) 1.55
Overexpression of miR-708 and its targets in the childhood common precursor B-cell ALL. Pediatr Blood Cancer (2013) 1.54
Listeria monocytogenes promotes tumor growth via tumor cell toll-like receptor 2 signaling. Cancer Res (2007) 1.53
Enhanced serodiagnostic utility of novel Mycobacterium tuberculosis polyproteins. J Infect (2012) 1.52
Predicting drug-drug interactions: an FDA perspective. AAPS J (2009) 1.52
Cancer incidence and mortality in china, 2006. Chin J Cancer Res (2011) 1.50
Clopidogrel and aspirin versus clopidogrel alone on graft patency after coronary artery bypass grafting. Ann Thorac Surg (2009) 1.49
Association between angiotensin-converting enzyme insertion/deletion gene polymorphism and atrial fibrillation: a meta-analysis. Europace (2010) 1.49
Report of incidence and mortality in china cancer registries, 2008. Chin J Cancer Res (2012) 1.49
The odorant binding protein gene family from the genome of silkworm, Bombyx mori. BMC Genomics (2009) 1.48
A genome-wide survey for host response of silkworm, Bombyx mori during pathogen Bacillus bombyseptieus infection. PLoS One (2009) 1.47
Loss of parafibromin immunoreactivity is a distinguishing feature of parathyroid carcinoma. Clin Cancer Res (2004) 1.47
Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing. BMC Genomics (2013) 1.46
Detection of miR-106a in gastric carcinoma and its clinical significance. Clin Chim Acta (2008) 1.44
Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation. Nat Genet (2012) 1.43
Whole-exome sequencing of 2,000 Danish individuals and the role of rare coding variants in type 2 diabetes. Am J Hum Genet (2013) 1.43
Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations. Nat Genet (2011) 1.42
S100A16 mediation of weight gain attenuation induced by dietary calcium. Metabolism (2011) 1.42
Dealing with the complex drug-drug interactions: towards mechanistic models. Biopharm Drug Dispos (2015) 1.40
Increased expression of miR-421 in human gastric carcinoma and its clinical association. J Gastroenterol (2009) 1.40
The utility of modeling and simulation in drug development and regulatory review. J Pharm Sci (2013) 1.38
Adsorption of 2-mercaptobenzothiazole from aqueous solution by organo-bentonite. J Environ Sci (China) (2013) 1.38
Draft genome sequence of the mulberry tree Morus notabilis. Nat Commun (2013) 1.38
Complete genome sequence of the mosquitocidal bacterium Bacillus sphaericus C3-41 and comparison with those of closely related Bacillus species. J Bacteriol (2008) 1.37
Imaging biomarkers predict response to anti-HER2 (ErbB2) therapy in preclinical models of breast cancer. Clin Cancer Res (2009) 1.35
Retracted MicroRNA expression profiling during the life cycle of the silkworm (Bombyx mori). BMC Genomics (2009) 1.35
Volume of preclinical xenograft tumors is more accurately assessed by ultrasound imaging than manual caliper measurements. J Ultrasound Med (2010) 1.35
Secreted LOXL2 is a novel therapeutic target that promotes gastric cancer metastasis via the Src/FAK pathway. Carcinogenesis (2009) 1.35
Dosage analysis of Z chromosome genes using microarray in silkworm, Bombyx mori. Insect Biochem Mol Biol (2008) 1.33
Characterization and expression patterns of let-7 microRNA in the silkworm (Bombyx mori). BMC Dev Biol (2007) 1.32
Autism-associated mutations in ProSAP2/Shank3 impair synaptic transmission and neurexin-neuroligin-mediated transsynaptic signaling. J Neurosci (2012) 1.31
Controlled growth and differentiation of MSCs on grooved films assembled from monodisperse biological nanofibers with genetically tunable surface chemistries. Biomaterials (2011) 1.31
KAIKObase: an integrated silkworm genome database and data mining tool. BMC Genomics (2009) 1.29