Published in Plant Methods on June 13, 2012
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Target genes of the MADS transcription factor SEPALLATA3: integration of developmental and hormonal pathways in the Arabidopsis flower. PLoS Biol (2009) 2.54
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Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins. PLoS Genet (2007) 1.87
Arabidopsis transcript profiling on Affymetrix GeneChip arrays. Plant Mol Biol (2003) 1.79
A microarray analysis of the rice transcriptome and its comparison to Arabidopsis. Genome Res (2005) 1.71
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Amine-modified random primers to label probes for DNA microarrays. Nat Biotechnol (2002) 1.54
H3K27me3 profiling of the endosperm implies exclusion of polycomb group protein targeting by DNA methylation. PLoS Genet (2010) 1.51
Probing the reproducibility of leaf growth and molecular phenotypes: a comparison of three Arabidopsis accessions cultivated in ten laboratories. Plant Physiol (2010) 1.46
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Analysis of Affymetrix GeneChip data using amplified RNA. Biotechniques (2006) 1.20
Reverse transcription using random pentadecamer primers increases yield and quality of resulting cDNA. Biotechniques (2006) 1.19
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biol (2009) 1.19
Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes. Plant J (2008) 1.14
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Transcriptome profile of human colorectal adenomas. Mol Cancer Res (2007) 3.82
The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. Curr Biol (2004) 3.16
Calmodulins and calcineurin B-like proteins: calcium sensors for specific signal response coupling in plants. Plant Cell (2002) 3.15
Genome-wide gene expression in an Arabidopsis cell suspension. Plant Mol Biol (2003) 3.12
Crosstalk between cytosolic and plastidial pathways of isoprenoid biosynthesis in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2003) 3.01
The Polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1. Genes Dev (2003) 2.99
Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana. Genome Biol (2004) 2.95
A global network of coexisting microbes from environmental and whole-genome sequence data. Genome Res (2010) 2.85
The RETINOBLASTOMA-RELATED gene regulates stem cell maintenance in Arabidopsis roots. Cell (2005) 2.77
Gene-expression analysis and network discovery using Genevestigator. Trends Plant Sci (2005) 2.69
Arabidopsis MSI1 is a component of the MEA/FIE Polycomb group complex and required for seed development. EMBO J (2003) 2.56
Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis. Plant Physiol (2005) 2.46
Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks. Plant Physiol (2009) 2.38
Molecular characterization of geminivirus-derived small RNAs in different plant species. Nucleic Acids Res (2006) 2.26
Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thaliana. Plant Cell (2005) 2.23
Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides. Mol Cell Proteomics (2005) 2.15
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Genome-wide analysis of gene expression profiles associated with cell cycle transitions in growing organs of Arabidopsis. Plant Physiol (2005) 2.06
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Plant retinoblastoma homologues control nuclear proliferation in the female gametophyte. Nature (2004) 1.91
Transcriptional programs of early reproductive stages in Arabidopsis. Plant Physiol (2004) 1.86
Genome-wide identification of potential plant E2F target genes. Plant Physiol (2005) 1.85
Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function. Genome Res (2009) 1.83
Web-based analysis of the mouse transcriptome using Genevestigator. BMC Bioinformatics (2006) 1.79
Arabidopsis transcript profiling on Affymetrix GeneChip arrays. Plant Mol Biol (2003) 1.79
Arabidopsis MSI1 is required for epigenetic maintenance of reproductive development. Development (2003) 1.65
MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data. Plant Physiol (2010) 1.59
H3K27me3 profiling of the endosperm implies exclusion of polycomb group protein targeting by DNA methylation. PLoS Genet (2010) 1.51
The CD4+ T cell-mediated IFN-gamma response to Helicobacter infection is essential for clearance and determines gastric cancer risk. J Immunol (2009) 1.49
NovoHMM: a hidden Markov model for de novo peptide sequencing. Anal Chem (2005) 1.49
Probing the reproducibility of leaf growth and molecular phenotypes: a comparison of three Arabidopsis accessions cultivated in ten laboratories. Plant Physiol (2010) 1.46
Polycomb-group proteins repress the floral activator AGL19 in the FLC-independent vernalization pathway. Genes Dev (2006) 1.41
Network analysis of the MVA and MEP pathways for isoprenoid synthesis. Annu Rev Plant Biol (2013) 1.41
The BioCassava plus program: biofortification of cassava for sub-Saharan Africa. Annu Rev Plant Biol (2011) 1.40
Arabidopsis RETINOBLASTOMA-RELATED is required for stem cell maintenance, cell differentiation, and lateral organ production. Plant Cell (2010) 1.39
Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Mol Syst Biol (2012) 1.38
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Genome-wide transcript analysis of Bradyrhizobium japonicum bacteroids in soybean root nodules. Mol Plant Microbe Interact (2007) 1.37
CHD3 proteins and polycomb group proteins antagonistically determine cell identity in Arabidopsis. PLoS Genet (2009) 1.36
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Exploiting the combination of natural and genetically engineered resistance to cassava mosaic and cassava brown streak viruses impacting cassava production in Africa. PLoS One (2012) 1.33
Rice endosperm iron biofortification by targeted and synergistic action of nicotianamine synthase and ferritin. Plant Biotechnol J (2009) 1.33
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Functional relevance of novel p300-mediated lysine 314 and 315 acetylation of RelA/p65. Nucleic Acids Res (2008) 1.32
Early aldosterone-induced gene product regulates the epithelial sodium channel by deubiquitylation. J Am Soc Nephrol (2007) 1.31
MSI1-like proteins: an escort service for chromatin assembly and remodeling complexes. Trends Cell Biol (2005) 1.30
MIAME/Plant - adding value to plant microarrray experiments. Plant Methods (2006) 1.29
Functional genomic analysis of CAF-1 mutants in Arabidopsis thaliana. J Biol Chem (2006) 1.29
Proteome dynamics during plastid differentiation in rice. Plant Physiol (2006) 1.28
Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks. Plant Cell (2012) 1.27
pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana. Integr Biol (Camb) (2011) 1.26
Epigenetic silencing of microRNA-203 dysregulates ABL1 expression and drives Helicobacter-associated gastric lymphomagenesis. Cancer Res (2011) 1.23
iTRAQ-based analysis of changes in the cassava root proteome reveals pathways associated with post-harvest physiological deterioration. Plant J (2011) 1.23
CD133 positive embryonal rhabdomyosarcoma stem-like cell population is enriched in rhabdospheres. PLoS One (2011) 1.22
Inactivation of the phloem-specific Dof zinc finger gene DAG1 affects response to light and integrity of the testa of Arabidopsis seeds. Plant Physiol (2002) 1.22
Regulation of flowering time by Arabidopsis MSI1. Development (2006) 1.22
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Genevestigator transcriptome meta-analysis and biomarker search using rice and barley gene expression databases. Mol Plant (2008) 1.21
High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance. Proc Natl Acad Sci U S A (2012) 1.20
Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF). Proc Natl Acad Sci U S A (2011) 1.20
Semi-supervised LC/MS alignment for differential proteomics. Bioinformatics (2006) 1.19
Enlarged meristems and delayed growth in plp mutants result from lack of CaaX prenyltransferases. Proc Natl Acad Sci U S A (2004) 1.19
Chromatin-remodeling and memory factors. New regulators of plant development. Plant Physiol (2002) 1.18
Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5. Plant J (2008) 1.18
Imprinting of the polycomb group gene MEDEA serves as a ploidy sensor in Arabidopsis. PLoS Genet (2009) 1.17
A dynamic reciprocal RBR-PRC2 regulatory circuit controls Arabidopsis gametophyte development. Curr Biol (2008) 1.17
Arabidopsis thaliana proteomics: from proteome to genome. J Exp Bot (2006) 1.16
Arabidopsis MSI1 connects LHP1 to PRC2 complexes. EMBO J (2013) 1.16
Genome-wide gene expression profiling reveals renal genes regulated during metabolic acidosis. Physiol Genomics (2007) 1.14
Engineering resistance to geminiviruses--review and perspectives. Plant Biotechnol J (2007) 1.14
Plastid proteome assembly without Toc159: photosynthetic protein import and accumulation of N-acetylated plastid precursor proteins. Plant Cell (2011) 1.12
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Structure and dynamics of the isoprenoid pathway network. Mol Plant (2012) 1.12