PubRank

Marc M Greenberg

Author PubWeight™ 104.92‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Repair of formamidopyrimidines in DNA involves different glycosylases: role of the OGG1, NTH1, and NEIL1 enzymes. J Biol Chem 2005 1.64
2 Efficient DNA interstrand cross-link formation from a nucleotide radical. J Am Chem Soc 2005 1.60
3 Genetic effects of oxidative DNA damages: comparative mutagenesis of the imidazole ring-opened formamidopyrimidines (Fapy lesions) and 8-oxo-purines in simian kidney cells. Nucleic Acids Res 2006 1.51
4 Rapid DNA-protein cross-linking and strand scission by an abasic site in a nucleosome core particle. Proc Natl Acad Sci U S A 2010 1.39
5 Oxygen independent DNA interstrand cross-link formation by a nucleotide radical. J Am Chem Soc 2006 1.38
6 The human Werner syndrome protein stimulates repair of oxidative DNA base damage by the DNA glycosylase NEIL1. J Biol Chem 2007 1.38
7 DNA interstrand cross-link formation initiated by reaction between singlet oxygen and a modified nucleotide. J Am Chem Soc 2005 1.37
8 Covalent trapping of human DNA polymerase beta by the oxidative DNA lesion 2-deoxyribonolactone. J Biol Chem 2002 1.30
9 Self-promoted DNA interstrand cross-link formation by an abasic site. J Am Chem Soc 2008 1.30
10 Tandem lesions are the major products resulting from a pyrimidine nucleobase radical. J Am Chem Soc 2003 1.28
11 Mutagenic effects of 2-deoxyribonolactone in Escherichia coli. An abasic lesion that disobeys the A-rule. Biochemistry 2004 1.28
12 Characterization and mechanism of formation of tandem lesions in DNA by a nucleobase peroxyl radical. J Am Chem Soc 2007 1.26
13 Double-strand break formation during nucleotide excision repair of a DNA interstrand cross-link. Biochemistry 2009 1.23
14 A comprehensive comparison of DNA replication past 2-deoxyribose and its tetrahydrofuran analog in Escherichia coli. Nucleic Acids Res 2004 1.22
15 Synthesis and characterization of oligodeoxynucleotides containing formamidopyrimidine lesions and nonhydrolyzable analogues. J Am Chem Soc 2002 1.20
16 Selective detection of 2-deoxyribonolactone in DNA. J Am Chem Soc 2005 1.18
17 Effects of the C4'-oxidized abasic site on replication in Escherichia coli. An unusually large deletion is induced by a small lesion. Biochemistry 2004 1.17
18 Synthesis and characterization of oligonucleotides containing the c4'-oxidized abasic site produced by bleomycin and other DNA damaging agents. Angew Chem Int Ed Engl 2003 1.15
19 Transforming thymidine into a magnetic resonance imaging probe for monitoring gene expression. J Am Chem Soc 2013 1.15
20 Replication termination mechanism as revealed by Tus-mediated polar arrest of a sliding helicase. Proc Natl Acad Sci U S A 2008 1.13
21 Repair of DNA containing Fapy.dG and its beta-C-nucleoside analogue by formamidopyrimidine DNA glycosylase and MutY. Biochemistry 2003 1.13
22 Cross-linking of 2-deoxyribonolactone and its beta-elimination product by base excision repair enzymes. Biochemistry 2003 1.13
23 Scope and mechanism of interstrand cross-link formation by the C4'-oxidized abasic site. J Am Chem Soc 2009 1.12
24 Preparation and analysis of oligonucleotides containing lesions resulting from C5'-oxidation. J Org Chem 2005 1.12
25 Fapy.dG instructs Klenow exo(-) to misincorporate deoxyadenosine. J Am Chem Soc 2002 1.11
26 Interstrand cross-link formation in duplex and triplex DNA by modified pyrimidines. J Am Chem Soc 2008 1.10
27 Efficient removal of formamidopyrimidines by 8-oxoguanine glycosylases. Biochemistry 2007 1.08
28 Use of fluorescence sensors to determine that 2-deoxyribonolactone is the major alkali-labile deoxyribose lesion produced in oxidatively damaged DNA. Angew Chem Int Ed Engl 2007 1.08
29 Photochemical generation and reactivity of the 5,6-dihydrouridin-6-yl radical. J Org Chem 2009 1.06
30 Studies on the replication of the ring opened formamidopyrimidine, Fapy.dG in Escherichia coli. Biochemistry 2007 1.06
31 DNA interstrand cross-link formation by the 1,4-dioxobutane abasic lesion. J Am Chem Soc 2009 1.05
32 A minor groove binding copper-phenanthroline conjugate produces direct strand breaks via beta-elimination of 2-deoxyribonolactone. J Am Chem Soc 2002 1.03
33 DNA tandem lesion repair by strand displacement synthesis and nucleotide excision repair. Biochemistry 2008 1.03
34 Multinuclear NMR and kinetic analysis of DNA interstrand cross-link formation. J Am Chem Soc 2008 1.03
35 Radiosensitization by a modified nucleotide that produces DNA interstrand cross-links under hypoxic conditions. J Am Chem Soc 2006 1.01
36 Action of human apurinic endonuclease (Ape1) on C1'-oxidized deoxyribose damage in DNA. DNA Repair (Amst) 2003 1.00
37 Product and mechanistic analysis of the reactivity of a C6-pyrimidine radical in RNA. J Am Chem Soc 2011 0.99
38 Selective detection and quantification of oxidized abasic lesions in DNA. J Am Chem Soc 2007 0.99
39 Mechanistic studies on histone catalyzed cleavage of apyrimidinic/apurinic sites in nucleosome core particles. J Am Chem Soc 2012 0.99
40 Histone-catalyzed cleavage of nucleosomal DNA containing 2-deoxyribonolactone. J Am Chem Soc 2012 0.98
41 Biologically relevant oxidants and terminology, classification and nomenclature of oxidatively generated damage to nucleobases and 2-deoxyribose in nucleic acids. Free Radic Res 2012 0.97
42 Mutagenic effects of abasic and oxidized abasic lesions in Saccharomyces cerevisiae. Nucleic Acids Res 2005 0.97
43 Facile quantification of lesions derived from 2'-deoxyguanosine in DNA. J Am Chem Soc 2007 0.97
44 Probing the configurations of formamidopyrimidine lesions Fapy.dA and Fapy.dG in DNA using endonuclease IV. Biochemistry 2004 0.97
45 Nucleotide excision repair of a DNA interstrand cross-link produces single- and double-strand breaks. Biochemistry 2010 0.97
46 Independent generation and characterization of a C2'-oxidized abasic site in chemically synthesized oligonucleotides. J Org Chem 2004 0.96
47 Replication of an oxidized abasic site in Escherichia coli by a dNTP-stabilized misalignment mechanism that reads upstream and downstream nucleotides. Biochemistry 2006 0.96
48 DNA strand damage product analysis provides evidence that the tumor cell-specific cytotoxin tirapazamine produces hydroxyl radical and acts as a surrogate for O(2). J Am Chem Soc 2007 0.96
49 Evidence for glycosidic bond rotation in a nucleobase peroxyl radical and its effect on tandem lesion formation. J Org Chem 2004 0.95
50 Direct strand scission in double stranded RNA via a C5-pyrimidine radical. J Am Chem Soc 2012 0.94
51 Irreversible inhibition of DNA polymerase beta by an oxidized abasic lesion. J Am Chem Soc 2010 0.94
52 Mild generation of 5-(2'-deoxyuridinyl)methyl radical from a phenyl selenide precursor. Org Lett 2004 0.94
53 Synthesis of oligonucleotides containing Fapy.dG (N(6)-(2-deoxy-alpha,beta-D-erythropentofuranosyl)-2,6-diamino-4-hydroxy-5-formamidopyrimidine) using a 5'-dimethoxytrityl dinucleotide phosphoramidite. J Org Chem 2005 0.94
54 Direct strand scission from a nucleobase radical in RNA. J Am Chem Soc 2010 0.94
55 Inhibition of short patch and long patch base excision repair by an oxidized abasic site. Biochemistry 2010 0.93
56 Photochemical generation and reactivity of the major hydroxyl radical adduct of thymidine. Org Lett 2012 0.93
57 Synthesis of oligonucleotides and thermal stability of duplexes containing the beta-C-nucleoside analogue of Fapy*dG. Chem Res Toxicol 2002 0.92
58 Facile SNP detection using bifunctional, cross-linking oligonucleotide probes. Nucleic Acids Res 2008 0.92
59 Fapy.dA induces nucleotide misincorporation translesionally by a DNA polymerase. Angew Chem Int Ed Engl 2002 0.92
60 Nucleosome core particle-catalyzed strand scission at abasic sites. Biochemistry 2013 0.91
61 Synthesis, DNA polymerase incorporation, and enzymatic phosphate hydrolysis of formamidopyrimidine nucleoside triphosphates. J Am Chem Soc 2006 0.90
62 Long patch base excision repair compensates for DNA polymerase β inactivation by the C4'-oxidized abasic site. Biochemistry 2010 0.90
63 Synthesis of a probe for monitoring HSV1-tk reporter gene expression using chemical exchange saturation transfer MRI. Nat Protoc 2013 0.90
64 Histone modification via rapid cleavage of C4'-oxidized abasic sites in nucleosome core particles. J Am Chem Soc 2013 0.89
65 Interaction of DNA containing Fapy.dA or its C-nucleoside analogues with base excision repair enzymes. Implications for mutagenesis and enzyme inhibition. Biochemistry 2002 0.89
66 Synthesis of 5,12-dioxocyclam nickel (II) complexes having quinoxaline substituents at the 6 and 13 positions as potential DNA bis-intercalating and cleaving agents. J Org Chem 2003 0.88
67 Protein binding has a large effect on radical mediated DNA damage. J Am Chem Soc 2008 0.88
68 DNA damage by C1027 involves hydrogen atom abstraction and addition to nucleobases. Bioorg Med Chem 2012 0.87
69 Excision of formamidopyrimidine lesions by endonucleases III and VIII is not a major DNA repair pathway in Escherichia coli. Nucleic Acids Res 2005 0.86
70 Independent generation and study of 5,6-Dihydro-2'-deoxyuridin-6-yl, a member of the major family of reactive intermediates formed in DNA from the effects of gamma-radiolysis. J Org Chem 2003 0.86
71 Probing DNA interstrand cross-link formation by an oxidized abasic site using nonnative nucleotides. Bioorg Med Chem 2011 0.86
72 Photochemical control of RNA structure by disrupting π-stacking. J Am Chem Soc 2012 0.86
73 Hydrogen bonding contributes to the selectivity of nucleotide incorporation opposite an oxidized abasic lesion. J Am Chem Soc 2008 0.85
74 Intracellular detection of cytosine incorporation in genomic DNA by using 5-ethynyl-2'-deoxycytidine. Chembiochem 2011 0.85
75 The mutagenicity of thymidine glycol in Escherichia coli is increased when it is part of a tandem lesion. Biochemistry 2009 0.84
76 Excision of a lyase-resistant oxidized abasic lesion from DNA. Chem Res Toxicol 2010 0.84
77 Synthesis of cross-linked DNA containing oxidized abasic site analogues. J Org Chem 2014 0.83
78 Gamma-radiolysis and hydroxyl radical produce interstrand cross-links in DNA involving thymidine. Chem Res Toxicol 2007 0.83
79 5,6-Dihydropyrimidine peroxyl radical reactivity in DNA. J Am Chem Soc 2014 0.83
80 DNA double strand cleavage via interstrand hydrogen atom abstraction. J Am Chem Soc 2013 0.83
81 Synthesis and analysis of oligonucleotides containing abasic site analogues. J Org Chem 2008 0.82
82 DNA polymerase λ inactivation by oxidized abasic sites. Biochemistry 2013 0.82
83 Recommendations for standardized description of and nomenclature concerning oxidatively damaged nucleobases in DNA. Chem Res Toxicol 2010 0.82
84 Mechanistic studies on DNA damage by minor groove binding copper-phenanthroline conjugates. Nucleic Acids Res 2005 0.82
85 The effect of the 2-amino group of 7,8-dihydro-8-oxo-2'-deoxyguanosine on translesion synthesis and duplex stability. Nucleic Acids Res 2005 0.81
86 Probing interactions between lysine residues in histone tails and nucleosomal DNA via product and kinetic analysis. ACS Chem Biol 2014 0.81
87 Competitive inhibition of uracil DNA glycosylase by a modified nucleotide whose triphosphate is a substrate for DNA polymerase. J Am Chem Soc 2009 0.81
88 Deconvoluting the reactivity of two intermediates formed from modified pyrimidines. Org Lett 2013 0.81
89 DNA damage and interstrand cross-link formation upon irradiation of aryl iodide C-nucleotide analogues. J Org Chem 2010 0.80
90 Independent generation and reactivity of uridin-2'-yl radical. J Org Chem 2014 0.80
91 Repair of oxidized purines and damaged pyrimidines by E. coli Fpg protein: different roles of proline 2 and lysine 57 residues. Environ Mol Mutagen 2002 0.80
92 Quantification of 8-oxodGuo lesions in double-stranded DNA using a photoelectrochemical DNA sensor. Anal Chem 2012 0.80
93 DNA polymerase bypass in vitro and in E. coli of a C-nucleotide analogue of Fapy-dG. Bioorg Med Chem 2008 0.79
94 DNA damage by histone radicals in nucleosome core particles. J Am Chem Soc 2014 0.79
95 Preparation and analysis of oligonucleotides containing the c4'-oxidized abasic site and related mechanistic probes. J Org Chem 2005 0.79
96 Nucleotide excision repair of chemically stabilized analogues of DNA interstrand cross-links produced from oxidized abasic sites. Biochemistry 2014 0.78
97 Hole migration is the major pathway involved in alkali-labile lesion formation in DNA by the direct effect of ionizing radiation. J Am Chem Soc 2007 0.78
98 Quantitative detection of 8-Oxo-7,8-dihydro-2'-deoxyguanosine using chemical tagging and qPCR. Chem Res Toxicol 2014 0.78
99 Rapid RNA strand scission following C2'-hydrogen atom abstraction. J Am Chem Soc 2015 0.78
100 Transcription inhibition using modified pentanucleotides. Bioorg Med Chem 2003 0.77
101 Irreversible inhibition of DNA polymerase β by small-molecule mimics of a DNA lesion. J Am Chem Soc 2014 0.77
102 A nucleic acid-directed, red light-induced chemical reaction. Chem Commun (Camb) 2010 0.77
103 Photochemical control of DNA structure through radical disproportionation. Chembiochem 2013 0.76
104 DNA interstrand cross-linking upon irradiation of aryl halide C-nucleotides. J Org Chem 2014 0.76
105 DNA polymerase V kinetics support the instructive nature of an oxidized abasic lesion in Escherichia coli. Biochemistry 2013 0.75
106 Human DNA polymerase β, but not λ, can bypass a 2-deoxyribonolactone lesion together with proliferating cell nuclear antigen. ACS Chem Biol 2012 0.75
107 Interstrand cross-link and bioconjugate formation in RNA from a modified nucleotide. J Org Chem 2014 0.75
108 Repair of the major lesion resulting from C5'-oxidation of DNA. Biochemistry 2011 0.75