Published in Nucleic Acids Res on June 06, 2010
Molecular signatures database (MSigDB) 3.0. Bioinformatics (2011) 8.08
BioProfiling.de: analytical web portal for high-throughput cell biology. Nucleic Acids Res (2011) 1.60
GeneSigDB: a manually curated database and resource for analysis of gene expression signatures. Nucleic Acids Res (2011) 1.54
MIPS: curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Res (2010) 1.19
δ-Tocotrienol and quercetin reduce serum levels of nitric oxide and lipid parameters in female chickens. Lipids Health Dis (2011) 1.11
Integrated Analysis Reveals hsa-miR-142 as a Representative of a Lymphocyte-Specific Gene Expression and Methylation Signature. Cancer Inform (2012) 1.00
Liverome: a curated database of liver cancer-related gene signatures with self-contained context information. BMC Genomics (2011) 0.95
TAp73 promotes anabolism. Oncotarget (2014) 0.89
Multi-edge gene set networks reveal novel insights into global relationships between biological themes. PLoS One (2012) 0.85
Identifying resistance mechanisms against five tyrosine kinase inhibitors targeting the ERBB/RAS pathway in 45 cancer cell lines. PLoS One (2013) 0.80
Large scale integration of drug-target information reveals poly-pharmacological drug action mechanisms in tumor cell line growth inhibition assays. Oncotarget (2014) 0.79
Polypharmacology of small molecules targeting the ubiquitin-proteasome and ubiquitin-like systems. Oncotarget (2015) 0.78
TAp73 transcriptionally represses BNIP3 expression. Cell Cycle (2015) 0.77
JUN dependency in distinct early and late BRAF inhibition adaptation states of melanoma. Cell Discov (2016) 0.76
p53MutaGene: an online tool to estimate the effect of p53 mutational status on gene regulation in cancer. Cell Death Dis (2016) 0.75
NFPscanner: a webtool for knowledge-based deciphering of biomedical networks. BMC Bioinformatics (2017) 0.75
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res (2008) 54.83
Characterizing gene sets with FuncAssociate. Bioinformatics (2003) 14.10
Autophagy mediates the mitotic senescence transition. Genes Dev (2009) 6.80
Linking genes to literature: text mining, information extraction, and retrieval applications for biology. Genome Biol (2008) 4.36
PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites. Nucleic Acids Res (2008) 2.63
PubMeth: a cancer methylation database combining text-mining and expert annotation. Nucleic Acids Res (2007) 2.41
ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data. Nucleic Acids Res (2008) 2.33
Cathepsin D--many functions of one aspartic protease. Crit Rev Oncol Hematol (2008) 2.26
Comprehensive proteomic analysis of human pancreatic juice. J Proteome Res (2004) 1.93
Phosphoproteomic analysis of AML cell lines identifies leukemic oncogenes. Leuk Res (2006) 1.76
High-throughput cellular microarray platforms: applications in drug discovery, toxicology and stem cell research. Trends Biotechnol (2009) 1.56
KEGG spider: interpretation of genomics data in the context of the global gene metabolic network. Genome Biol (2008) 1.49
MeInfoText: associated gene methylation and cancer information from text mining. BMC Bioinformatics (2008) 1.34
GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists. Nucleic Acids Res (2009) 1.31
Identification of novel p53 target genes in ionizing radiation response. Cancer Res (2005) 1.28
Common alterations in gene expression and increased proliferation in recurrent acute myeloid leukemia. Oncogene (2004) 1.26
Database for exploration of functional context of genes implicated in ovarian cancer. Nucleic Acids Res (2008) 1.21
PPI spider: a tool for the interpretation of proteomics data in the context of protein-protein interaction networks. Proteomics (2009) 1.19
Activation of MAP kinase signaling through ERK5 but not ERK1 expression is associated with lymph node metastases in oral squamous cell carcinoma (OSCC). Neoplasia (2008) 1.17
In vivo p53 response and immune reaction underlie highly effective low-dose radiotherapy in follicular lymphoma. Blood (2007) 1.04
Acid elution and one-dimensional shotgun analysis on an Orbitrap mass spectrometer: an application to drug affinity chromatography. J Proteome Res (2009) 1.03
The DICS repository: module-assisted analysis of disease-related gene lists. Bioinformatics (2009) 1.00
DDEC: Dragon database of genes implicated in esophageal cancer. BMC Cancer (2009) 0.97
Simultaneous expression of Cathepsins B and K in pulmonary adenocarcinomas and squamous cell carcinomas predicts poor recurrence-free and overall survival. Lung Cancer (2008) 0.96
PLIPS, an automatically collected database of protein lists reported by proteomics studies. J Proteome Res (2009) 0.96
Saccharide microarrays for high-throughput interrogation of glycan-protein binding interactions. Methods Mol Biol (2009) 0.89
Mining protein lists from proteomics studies: applications for drug discovery. Expert Opin Drug Discov (2010) 0.80
The BioPAX community standard for pathway data sharing. Nat Biotechnol (2010) 9.19
Pathway Commons, a web resource for biological pathway data. Nucleic Acids Res (2010) 9.18
Bace1 modulates myelination in the central and peripheral nervous system. Nat Neurosci (2006) 3.85
Elevated beta-secretase expression and enzymatic activity detected in sporadic Alzheimer disease. Nat Med (2003) 3.78
Amyloid beta peptide load is correlated with increased beta-secretase activity in sporadic Alzheimer's disease patients. Proc Natl Acad Sci U S A (2004) 2.88
Hepatic encephalopathy in chronic liver disease: 2014 Practice Guideline by the American Association for the Study of Liver Diseases and the European Association for the Study of the Liver. Hepatology (2014) 2.56
Phase 2 gene therapy trial of an anti-HIV ribozyme in autologous CD34+ cells. Nat Med (2009) 2.21
Management of chronic hepatitis C: consensus guidelines. Can J Gastroenterol (2007) 2.06
Pathogenicity determinants in smut fungi revealed by genome comparison. Science (2010) 2.03
Management of chronic hepatitis B: consensus guidelines. Can J Gastroenterol (2007) 1.78
Ectopic varices. Gastrointest Endosc (2011) 1.75
Reversion of a fungal genetic code alteration links proteome instability with genomic and phenotypic diversification. Proc Natl Acad Sci U S A (2013) 1.75
Pharmacological response of human cardiomyocytes derived from virus-free induced pluripotent stem cells. Cardiovasc Res (2011) 1.67
Sildenafil preserves intracorporeal smooth muscle after radical retropubic prostatectomy. J Urol (2004) 1.62
Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements. Plant Cell (2012) 1.61
Clostridium difficile colitis: increasing incidence, risk factors, and outcomes in solid organ transplant recipients. Transplantation (2012) 1.52
Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica. PLoS Pathog (2011) 1.52
Using biological pathway data with paxtools. PLoS Comput Biol (2013) 1.50
G-CSF for stem cell therapy in acute myocardial infarction: friend or foe? Cardiovasc Res (2010) 1.47
Bioabsorbable vascular scaffold overexpansion: insights from in vitro post-expansion experiments. EuroIntervention (2016) 1.45
BACE1 deficiency causes altered neuronal activity and neurodegeneration. J Neurosci (2010) 1.45
Ex vivo differentiation of human adult bone marrow stem cells into cardiomyocyte-like cells. Biochem Biophys Res Commun (2004) 1.43
Retracted Myoblast transplantation for cardiac repair: from automyoblast to allomyoblast transplantation. Ann Thorac Surg (2008) 1.39
MIPS bacterial genomes functional annotation benchmark dataset. Bioinformatics (2005) 1.37
In regard to RTOG sarcoma radiation oncologists reach consensus on gross tumor volume and clinical target volume on computed tomographic images for preoperative radiotherapy of primary soft tissue sarcoma of extremity in Radiation Therapy Oncology Group studies: in regard to Wang et al (Int J Radiat Oncol Biol Phys 2011;81:e525-e528). Int J Radiat Oncol Biol Phys (2012) 1.37
A domain interaction map based on phylogenetic profiling. J Mol Biol (2004) 1.35
FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum. Nucleic Acids Res (2010) 1.35
Incomplete stent apposition causes high shear flow disturbances and delay in neointimal coverage as a function of strut to wall detachment distance: implications for the management of incomplete stent apposition. Circ Cardiovasc Interv (2014) 1.33
The Negatome database: a reference set of non-interacting protein pairs. Nucleic Acids Res (2009) 1.32
GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists. Nucleic Acids Res (2009) 1.31
Generation of patient-specific induced pluripotent stem cell-derived cardiomyocytes as a cellular model of arrhythmogenic right ventricular cardiomyopathy. Eur Heart J (2012) 1.24
Hepatitis E in new zealand. J Gastroenterol Hepatol (2007) 1.23
TICL--a web tool for network-based interpretation of compound lists inferred by high-throughput metabolomics. FEBS J (2009) 1.21
PPI spider: a tool for the interpretation of proteomics data in the context of protein-protein interaction networks. Proteomics (2009) 1.19
Disrupted-in-Schizophrenia-1 expression is regulated by beta-site amyloid precursor protein cleaving enzyme-1-neuregulin cascade. Proc Natl Acad Sci U S A (2010) 1.18
Electrophysiology of human cardiac atrial and ventricular telocytes. J Cell Mol Med (2014) 1.14
Transcriptome analysis of nitrate assimilation in Aspergillus nidulans reveals connections to nitric oxide metabolism. Mol Microbiol (2010) 1.12
Modeling type 3 long QT syndrome with cardiomyocytes derived from patient-specific induced pluripotent stem cells. Int J Cardiol (2013) 1.11
One-step derivation of cardiomyocytes and mesenchymal stem cells from human pluripotent stem cells. Stem Cell Res (2012) 1.06
Pretreatment serum VEGF is associated with clinical response and overall survival in advanced melanoma patients treated with ipilimumab. Cancer Immunol Res (2014) 1.05
Current trends in diagnostic biomarkers of acute coronary syndrome. Ann Acad Med Singapore (2010) 1.05
Analysis and outcomes of right lobe hepatectomy in 101 consecutive living donors. Am J Transplant (2005) 1.04
Specificity in substrate and cofactor recognition by the N-terminal domain of the chaperone ClpX. Proc Natl Acad Sci U S A (2006) 1.02
Noninvasive diagnosis of liver fibrosis: The importance of being reimbursed. Can J Gastroenterol Hepatol (2015) 0.97
PLIPS, an automatically collected database of protein lists reported by proteomics studies. J Proteome Res (2009) 0.96
Cell delivery and tracking in post-myocardial infarction cardiac stem cell therapy: an introduction for clinical researchers. Heart Fail Rev (2010) 0.93
Pattern search in BioPAX models. Bioinformatics (2013) 0.93
Hemodynamic contribution of stem cell scaffolding in acute injured myocardium. Tissue Eng Part A (2012) 0.92
Early changes in kidney function predict long-term chronic kidney disease and mortality in patients after liver transplantation. Transplantation (2011) 0.91
Identification and characterization of calcium sparks in cardiomyocytes derived from human induced pluripotent stem cells. PLoS One (2013) 0.90
Differential effect of myocardial matrix and integrins on cardiac differentiation of human mesenchymal stem cells. Differentiation (2010) 0.88
Benchmarking of linear and nonlinear approaches for quantitative structure-property relationship studies of metal complexation with ionophores. J Chem Inf Model (2006) 0.86
Hepatitis B and the infected health care worker: public safety at what cost? Can J Gastroenterol (2012) 0.85
Liquid chromatography/tandem mass spectrometry for the determination of carbamazepine and its main metabolite in rat plasma utilizing an automated blood sampling system. J Pharm Biomed Anal (2005) 0.85
Pharmacoelectrophysiology of viral-free induced pluripotent stem cell-derived human cardiomyocytes. Toxicol Sci (2012) 0.85
iPSC-derived human mesenchymal stem cells improve myocardial strain of infarcted myocardium. J Cell Mol Med (2014) 0.85
Complex principal component and correlation structure of 16 yeast genomic variables. Mol Biol Evol (2011) 0.84
Critical path in cardiac stem cell therapy: an update on cell delivery. Cytotherapy (2013) 0.84
Hydrogen sulphide suppresses human atrial fibroblast proliferation and transformation to myofibroblasts. J Cell Mol Med (2013) 0.83
Characterization of hepatitis B virus genotypes and quantitative hepatitis B surface antigen titres in North American tertiary referral liver centres. Liver Int (2013) 0.83
Antioxidant therapy in nonalcoholic steatohepatitis. Hepat Res Treat (2012) 0.83
Systems biology of infectious diseases: a focus on fungal infections. Immunobiology (2011) 0.83
Tumor necrosis factor-α-induced nuclear factor-kappaB activation in human cardiomyocytes is mediated by NADPH oxidase. J Physiol Biochem (2014) 0.82
Label-free impedance detection of low levels of circulating endothelial progenitor cells for point-of-care diagnosis. Biosens Bioelectron (2009) 0.82
Atrioventricular junction (AVJ) motion tracking: a software tool with ITK/VTK/Qt. Conf Proc IEEE Eng Med Biol Soc (2016) 0.82
Tumor necrosis factor-α induces aortic intima-media thickening via perivascular adipose tissue inflammation. J Vasc Res (2013) 0.81
Genomic mapping of the MHC transactivator CIITA using an integrated ChIP-seq and genetical genomics approach. Genome Biol (2014) 0.80
AERS spider: an online interactive tool to mine statistical associations in Adverse Event Reporting System. Pharmacoepidemiol Drug Saf (2014) 0.80
Complete atrioventricular block complicating acute anterior myocardial infarction can be reversed with acute coronary angioplasty. Ann Acad Med Singapore (2010) 0.80
Postoperative radiotherapy improves local control and survival in patients with uterine leiomyosarcoma. Radiat Oncol (2013) 0.80
Dosimetric evolution of the breast electron boost target using 3D ultrasound imaging. Radiother Oncol (2010) 0.80
Myoblast-based cardiac repair: xenomyoblast versus allomyoblast transplantation. J Thorac Cardiovasc Surg (2007) 0.80
Large scale integration of drug-target information reveals poly-pharmacological drug action mechanisms in tumor cell line growth inhibition assays. Oncotarget (2014) 0.79
The utility of Xenon-133 liver scan in the diagnosis and management of nonalcoholic fatty liver disease. Can J Gastroenterol (2012) 0.79
Do TE activity and counteracting genome defenses, RNAi and methylation, shape the sex lives of smut fungi? Plant Signal Behav (2013) 0.79
Hsp110 is required for spindle length control. J Cell Biol (2012) 0.79
Complications of endoscopic retrograde cholangiopancreatography. N Z Med J (2003) 0.79
Biodegradable vascular scaffold: is optimal expansion the key to minimising flow disturbances and risk of adverse events? EuroIntervention (2015) 0.78
Angiopoietin-1 promotes functional neovascularization that relieves ischemia by improving regional reperfusion in a swine chronic myocardial ischemia model. J Biomed Sci (2006) 0.78
Hydrogen sulfide suppresses outward rectifier potassium currents in human pluripotent stem cell-derived cardiomyocytes. PLoS One (2012) 0.78
Smoking increases recurrent viral hepatitis after liver transplantation. Liver Transpl (2012) 0.77
Erratum: anticancer immunotherapy by CTLA-4 blockade: obligatory contribution of IL-2 receptors and negative prognostic impact of soluble CD25. Cell Res (2015) 0.77
Dose-dependent systolic contribution of differentiated stem cells in post-infarct ventricular function. J Heart Lung Transplant (2010) 0.77
Soft tissue sarcoma and radiation therapy advances, impact on toxicity. Curr Treat Options Oncol (2015) 0.76
In vivo chromatin decondensation assays: molecular genetic analysis of chromatin unfolding characteristics of selected proteins. Methods Mol Biol (2009) 0.76
Endoscopic management of portal hypertension. Int J Hepatol (2012) 0.76
Prevalence and predictors of sleep disturbance among liver diseases in long-term transplant survivors. Can J Gastroenterol Hepatol (2015) 0.75
A care coordination program to optimize management of cirrhosis: real-life applicability and feasibility in the context of the Canadian health care system. Can J Gastroenterol Hepatol (2014) 0.75
Fibroatheroma identification in Intravascular Optical Coherence Tomography images using deep features. Conf Proc IEEE Eng Med Biol Soc (2017) 0.75
Bioresorbable Scaffold Thrombosis: Why BRS Size Matters. J Am Coll Cardiol (2016) 0.75
The role of hepatitis B immunoglobulin in hepatitis B related liver transplantation: Canadian Transplant Centre Position Paper. Ann Hepatol (2011) 0.75
Early coverage of drug-eluting stents analysed by optical coherence tomography: evidence of the impact of stent apposition and strut characteristics on the neointimal healing process. EuroIntervention (2016) 0.75
Acute coronary syndrome: from epidemiology to treatment. Ann Acad Med Singapore (2010) 0.75
Electrotonic coupled metabolic purification of chick cardiomyocytes. Methods Mol Biol (2015) 0.75
Expression of heterologous genes in the Amsacta moorei entomopoxvirus. J Virol Methods (2009) 0.75
Wettability engendered templated self-assembly (WETS) for fabricating multiphasic particles. ACS Appl Mater Interfaces (2015) 0.75
Intravascular Assessment of Arterial Disease Using Compensated OCT in Comparison With Histology. JACC Cardiovasc Imaging (2015) 0.75
Bioresorbable vascular scaffold radial expansion and conformation compared to a metallic platform: insights from in vitro expansion in a coronary artery lesion model. EuroIntervention (2016) 0.75
Structural stability of neoangiogenic intramyocardial microvessels supports functional recovery in chronic ischemic myocardium. J Mol Cell Cardiol (2008) 0.75
Determination of rosiglitazone and 5-hydroxy rosiglitazone in rat plasma using LC-HRMS by direct and indirect quantitative analysis: a new approach for metabolite quantification. Bioanalysis (2013) 0.75