Published in Nucleic Acids Res on November 10, 2010
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Integrating literature-constrained and data-driven inference of signalling networks. Bioinformatics (2012) 1.03
UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks. Nucleic Acids Res (2013) 1.02
Inference and validation of predictive gene networks from biomedical literature and gene expression data. Genomics (2014) 1.01
Detecting and removing inconsistencies between experimental data and signaling network topologies using integer linear programming on interaction graphs. PLoS Comput Biol (2013) 1.01
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EpilepsyGene: a genetic resource for genes and mutations related to epilepsy. Nucleic Acids Res (2014) 0.99
Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles. Bioinformatics (2014) 0.99
Systematic curation of protein and genetic interaction data for computable biology. BMC Biol (2013) 0.99
GASOLINE: a Greedy And Stochastic algorithm for optimal Local multiple alignment of Interaction NEtworks. PLoS One (2014) 0.97
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Large-scale RNA-Seq Transcriptome Analysis of 4043 Cancers and 548 Normal Tissue Controls across 12 TCGA Cancer Types. Sci Rep (2015) 0.95
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Predicting functional gene interactions with the hierarchical interaction score. Nat Methods (2013) 0.94
Integrating biological pathways and genomic profiles with ChiBE 2. BMC Genomics (2014) 0.94
PathwayMatrix: visualizing binary relationships between proteins in biological pathways. BMC Proc (2015) 0.93
PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools. Nucleic Acids Res (2013) 0.93
Pattern search in BioPAX models. Bioinformatics (2013) 0.93
Anatomy of BioJS, an open source community for the life sciences. Elife (2015) 0.93
Lynx: a database and knowledge extraction engine for integrative medicine. Nucleic Acids Res (2013) 0.93
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Targeted sequencing reveals clonal genetic changes in the progression of early lung neoplasms and paired circulating DNA. Nat Commun (2015) 0.92
Analysis of the genomic response of human prostate cancer cells to histone deacetylase inhibitors. Epigenetics (2013) 0.92
Extensive decoupling of metabolic genes in cancer. PLoS Comput Biol (2015) 0.91
Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomes. Brief Bioinform (2015) 0.91
Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment. BMC Bioinformatics (2015) 0.90
PathNER: a tool for systematic identification of biological pathway mentions in the literature. BMC Syst Biol (2013) 0.90
A BAYESIAN NONPARAMETRIC MIXTURE MODEL FOR SELECTING GENES AND GENE SUBNETWORKS. Ann Appl Stat (2014) 0.90
dbEMT: an epithelial-mesenchymal transition associated gene resource. Sci Rep (2015) 0.90
A strategy based on protein-protein interface motifs may help in identifying drug off-targets. J Chem Inf Model (2012) 0.90
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NIRF constitutes a nodal point in the cell cycle network and is a candidate tumor suppressor. Cell Cycle (2011) 0.89
Atlas of Cancer Signalling Network: a systems biology resource for integrative analysis of cancer data with Google Maps. Oncogenesis (2015) 0.88
IPAVS: Integrated Pathway Resources, Analysis and Visualization System. Nucleic Acids Res (2011) 0.88
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Systems-level analysis of innate immunity. Annu Rev Immunol (2014) 0.88
Network medicine analysis of COPD multimorbidities. Respir Res (2014) 0.87
Identification of cancer fusion drivers using network fusion centrality. Bioinformatics (2013) 0.87
The BioGRID interaction database: 2017 update. Nucleic Acids Res (2016) 0.86
Pathway Distiller - multisource biological pathway consolidation. BMC Genomics (2012) 0.86
Pathway Analysis: State of the Art. Front Physiol (2015) 0.86
Prioritizing disease candidate genes by a gene interconnectedness-based approach. BMC Genomics (2011) 0.86
Network and data integration for biomarker signature discovery via network smoothed T-statistics. PLoS One (2013) 0.86
Synthetic lethal screens as a means to understand and treat MYC-driven cancers. Cold Spring Harb Perspect Med (2014) 0.86
PiHelper: an open source framework for drug-target and antibody-target data. Bioinformatics (2013) 0.86
Large-Scale Profiling of Kinase Dependencies in Cancer Cell Lines. Cell Rep (2016) 0.86
Comparison of REST cistromes across human cell types reveals common and context-specific functions. PLoS Comput Biol (2014) 0.85
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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res (2008) 54.83
The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res (2006) 22.70
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2008) 21.36
Human Protein Reference Database--2009 update. Nucleic Acids Res (2008) 21.25
Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res (2008) 15.69
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Network-based classification of breast cancer metastasis. Mol Syst Biol (2007) 12.18
The BioGRID Interaction Database: 2008 update. Nucleic Acids Res (2007) 11.83
Cytoscape Web: an interactive web-based network browser. Bioinformatics (2010) 10.03
The IntAct molecular interaction database in 2010. Nucleic Acids Res (2009) 9.85
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MINT, the molecular interaction database: 2009 update. Nucleic Acids Res (2009) 7.19
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Automated network analysis identifies core pathways in glioblastoma. PLoS One (2010) 3.64
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ChiBE: interactive visualization and manipulation of BioPAX pathway models. Bioinformatics (2009) 1.76
Algorithms for effective querying of compound graph-based pathway databases. BMC Bioinformatics (2009) 1.26
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Integrative genomic profiling of human prostate cancer. Cancer Cell (2010) 23.61
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Global mapping of the yeast genetic interaction network. Science (2004) 21.34
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Functional impact of global rare copy number variation in autism spectrum disorders. Nature (2010) 14.66
Integrated genomic characterization of endometrial carcinoma. Nature (2013) 14.29
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The BioPAX community standard for pathway data sharing. Nat Biotechnol (2010) 9.19
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miR-122, a mammalian liver-specific microRNA, is processed from hcr mRNA and may downregulate the high affinity cationic amino acid transporter CAT-1. RNA Biol (2004) 6.44
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Subtype-specific genomic alterations define new targets for soft-tissue sarcoma therapy. Nat Genet (2010) 6.10
Pathguide: a pathway resource list. Nucleic Acids Res (2006) 6.05
Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas. N Engl J Med (2015) 5.71
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GeneMANIA prediction server 2013 update. Nucleic Acids Res (2013) 2.74
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