Published in J Biol Chem on September 22, 2010
Multivariate Analysis in Metabolomics. Curr Metabolomics (2015) 1.61
A dysfunctional tricarboxylic acid cycle enhances fitness of Staphylococcus epidermidis during β-lactam stress. MBio (2013) 1.28
Analysis of bacterial biofilms using NMR-based metabolomics. Future Med Chem (2012) 1.11
NMR analysis of a stress response metabolic signaling network. J Proteome Res (2011) 1.00
CcpA coordinates central metabolism and biofilm formation in Staphylococcus epidermidis. Microbiology (2011) 0.97
(1)H NMR-based metabolomic analysis for identifying serum biomarkers to evaluate methotrexate treatment in patients with early rheumatoid arthritis. Exp Ther Med (2012) 0.95
Exometabolome analysis identifies pyruvate dehydrogenase as a target for the antibiotic triphenylbismuthdichloride in multiresistant bacterial pathogens. J Biol Chem (2011) 0.93
RpiR homologues may link Staphylococcus aureus RNAIII synthesis and pentose phosphate pathway regulation. J Bacteriol (2011) 0.92
Regulating the Intersection of Metabolism and Pathogenesis in Gram-positive Bacteria. Microbiol Spectr (2015) 0.89
Influence of iron and aeration on Staphylococcus aureus growth, metabolism, and transcription. J Bacteriol (2014) 0.88
Revisiting Protocols for the NMR Analysis of Bacterial Metabolomes. J Integr OMICS (2013) 0.87
TCA cycle inactivation in Staphylococcus aureus alters nitric oxide production in RAW 264.7 cells. Mol Cell Biochem (2011) 0.83
Comprehensive Metabolite Identification Strategy Using Multiple Two-Dimensional NMR Spectra of a Complex Mixture Implemented in the COLMARm Web Server. Anal Chem (2016) 0.77
Regulation of GacA in Pseudomonas chlororaphis Strains Shows a Niche Specificity. PLoS One (2015) 0.75
The Active Component of Aspirin, Salicylic Acid, Promotes Staphylococcus aureus Biofilm Formation in a PIA-dependent Manner. Front Microbiol (2017) 0.75
Research in bioanalysis and separations at the University of Nebraska - Lincoln. Bioanalysis (2011) 0.75
KEGG for linking genomes to life and the environment. Nucleic Acids Res (2007) 49.37
Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions. J Biomol NMR (1992) 17.71
Gene splicing by overlap extension: tailor-made genes using the polymerase chain reaction. Biotechniques (1990) 13.62
HMDB: the Human Metabolome Database. Nucleic Acids Res (2007) 13.38
BioMagResBank. Nucleic Acids Res (2007) 10.21
Environmental signals controlling expression of virulence determinants in bacteria. J Bacteriol (1992) 9.40
Using NMRView to visualize and analyze the NMR spectra of macromolecules. Methods Mol Biol (2004) 8.02
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. Nucleic Acids Res (2005) 7.13
Pathogenesis of infections due to coagulase-negative staphylococci. Lancet Infect Dis (2002) 5.94
Role of iron in bacterial infection. Curr Top Microbiol Immunol (1978) 5.92
Metabolite identification via the Madison Metabolomics Consortium Database. Nat Biotechnol (2008) 5.12
Role of iron in regulation of virulence genes. Clin Microbiol Rev (1993) 5.00
Identification of Staphylococcus aureus virulence genes in a murine model of bacteraemia using signature-tagged mutagenesis. Mol Microbiol (1997) 4.32
Bootstrap confidence levels for phylogenetic trees. Proc Natl Acad Sci U S A (1996) 4.19
Staphylococcus aureus virulence genes identified by bursa aurealis mutagenesis and nematode killing. Proc Natl Acad Sci U S A (2004) 3.89
Parallel induction by glucose of adherence and a polysaccharide antigen specific for plastic-adherent Staphylococcus epidermidis: evidence for functional relation to intercellular adhesion. Infect Immun (1992) 3.68
Sigma-B, a putative operon encoding alternate sigma factor of Staphylococcus aureus RNA polymerase: molecular cloning and DNA sequencing. J Bacteriol (1996) 3.58
Microarray-based analysis of the Staphylococcus aureus sigmaB regulon. J Bacteriol (2004) 3.45
The role of iron in the activation-inactivation of aconitase. J Biol Chem (1983) 3.42
Phylogenetic analysis using PHYLIP. Methods Mol Biol (2000) 3.27
Polysaccharide intercellular adhesin (PIA) protects Staphylococcus epidermidis against major components of the human innate immune system. Cell Microbiol (2004) 3.26
A crucial role for exopolysaccharide modification in bacterial biofilm formation, immune evasion, and virulence. J Biol Chem (2004) 3.05
Staphylococcus aureus genetic loci impacting growth and survival in multiple infection environments. Mol Microbiol (1998) 3.04
Influence of a functional sigB operon on the global regulators sar and agr in Staphylococcus aureus. J Bacteriol (2001) 2.97
Biofilm formation by Staphylococcus epidermidis depends on functional RsbU, an activator of the sigB operon: differential activation mechanisms due to ethanol and salt stress. J Bacteriol (2001) 2.89
Control of key metabolic intersections in Bacillus subtilis. Nat Rev Microbiol (2007) 2.81
Carbon catabolite repression in bacteria: choice of the carbon source and autoregulatory limitation of sugar utilization. FEMS Microbiol Lett (2002) 2.67
Stimulation of Staphylococcus epidermidis growth and biofilm formation by catecholamine inotropes. Lancet (2003) 2.56
ATP-dependent protein kinase-catalyzed phosphorylation of a seryl residue in HPr, a phosphate carrier protein of the phosphotransferase system in Streptococcus pyogenes. Proc Natl Acad Sci U S A (1983) 2.43
At the crossroads of bacterial metabolism and virulence factor synthesis in Staphylococci. Microbiol Mol Biol Rev (2009) 2.41
Characterization of Staphylococcus epidermidis polysaccharide intercellular adhesin/hemagglutinin in the pathogenesis of intravascular catheter-associated infection in a rat model. Infect Immun (1999) 2.29
CcpA-dependent carbon catabolite repression in bacteria. Microbiol Mol Biol Rev (2003) 2.21
The effect of growth conditions on oxidative and dehydrogenase activity in Staphylococcus aureus. J Gen Microbiol (1962) 2.11
Staphylococcus aureus aconitase inactivation unexpectedly inhibits post-exponential-phase growth and enhances stationary-phase survival. Infect Immun (2002) 2.10
Oxygen tensions and infections: modulation of microbial growth, activity of antimicrobial agents, and immunologic responses. Clin Infect Dis (1992) 2.04
Activation of the Bacillus subtilis global regulator CodY by direct interaction with branched-chain amino acids. Mol Microbiol (2004) 1.96
Carbon-source regulation of virulence gene expression in Listeria monocytogenes. Mol Microbiol (1997) 1.93
Contrasting sensitivities of Escherichia coli aconitases A and B to oxidation and iron depletion. J Bacteriol (2003) 1.88
Staphylococcus aureus CodY negatively regulates virulence gene expression. J Bacteriol (2007) 1.88
Scaling and normalization effects in NMR spectroscopic metabonomic data sets. Anal Chem (2006) 1.81
Correlation of acetate catabolism and growth yield in Staphylococcus aureus: implications for host-pathogen interactions. Infect Immun (2003) 1.66
Staphylococcus aureus fur regulates the expression of virulence factors that contribute to the pathogenesis of pneumonia. Infect Immun (2010) 1.59
Synthesis and deformylation of Staphylococcus aureus delta-toxin are linked to tricarboxylic acid cycle activity. J Bacteriol (2003) 1.59
Analysis of metabolomic PCA data using tree diagrams. Anal Biochem (2009) 1.57
Positive regulation of Bacillus subtilis ackA by CodY and CcpA: establishing a potential hierarchy in carbon flow. Mol Microbiol (2006) 1.47
Regulation of slime production in Staphylococcus epidermidis by iron limitation. Infect Immun (1993) 1.45
Staphylococcus epidermidis polysaccharide intercellular adhesin production significantly increases during tricarboxylic acid cycle stress. J Bacteriol (2005) 1.44
The sigmaB regulon in Staphylococcus aureus and its regulation. Int J Med Microbiol (2006) 1.43
A mitochondrial-like aconitase in the bacterium Bacteroides fragilis: implications for the evolution of the mitochondrial Krebs cycle. Proc Natl Acad Sci U S A (2002) 1.37
Staphylococcus aureus CcpA affects biofilm formation. Infect Immun (2008) 1.37
Staphylococcus aureus virulence factors identified by using a high-throughput Caenorhabditis elegans-killing model. Infect Immun (2005) 1.31
Negative impact of noise on the principal component analysis of NMR data. J Magn Reson (2005) 1.24
Physiological characterization of Pseudomonas aeruginosa during exotoxin A synthesis: glutamate, iron limitation, and aconitase activity. J Bacteriol (1999) 1.21
SigmaB and SarA independently regulate polysaccharide intercellular adhesin production in Staphylococcus epidermidis. Can J Microbiol (2007) 1.19
Tricarboxylic acid cycle-dependent regulation of Staphylococcus epidermidis polysaccharide intercellular adhesin synthesis. J Bacteriol (2008) 1.17
Use of NMR metabolomics to analyze the targets of D-cycloserine in mycobacteria: role of D-alanine racemase. J Proteome Res (2007) 1.17
sigmaB and the sigmaB-dependent arlRS and yabJ-spoVG loci affect capsule formation in Staphylococcus aureus. Infect Immun (2007) 1.12
Effects of alcohols, povidone-iodine and hydrogen peroxide on biofilms of Staphylococcus epidermidis. J Antimicrob Chemother (2007) 1.09
SOGGY: solvent-optimized double gradient spectroscopy for water suppression. A comparison with some existing techniques. J Magn Reson (2006) 1.07
Tricarboxylic acid cycle-dependent attenuation of Staphylococcus aureus in vivo virulence by selective inhibition of amino acid transport. Infect Immun (2009) 1.04
NMR metabolic profiling of Aspergillus nidulans to monitor drug and protein activity. J Proteome Res (2006) 0.92
Dependence of Staphylococcus epidermidis on non-transferrin-bound iron for growth. FEMS Microbiol Lett (2001) 0.89
Alternative membrane protein conformations in alcohols. Biochemistry (2007) 0.82
Alcohol increases hemolysis by staphylococci. FEMS Microbiol Lett (2007) 0.80
A second generation human haplotype map of over 3.1 million SNPs. Nature (2007) 85.39
Genome-wide detection and characterization of positive selection in human populations. Nature (2007) 17.27
The long-term effect of lifestyle interventions to prevent diabetes in the China Da Qing Diabetes Prevention Study: a 20-year follow-up study. Lancet (2008) 9.03
Heritable gene targeting in zebrafish using customized TALENs. Nat Biotechnol (2011) 8.34
Genome sequence and analysis of the tuber crop potato. Nature (2011) 7.77
The Genomes of Oryza sativa: a history of duplications. PLoS Biol (2005) 7.67
Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell (2012) 5.16
The Norway spruce genome sequence and conifer genome evolution. Nature (2013) 4.74
H5N1 infection of the respiratory tract and beyond: a molecular pathology study. Lancet (2007) 4.62
Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics. J Am Chem Soc (2005) 4.43
A common sense approach to peak picking in two-, three-, and four-dimensional spectra using automatic computer analysis of contour diagrams. 1991. J Magn Reson (2011) 3.69
Neuronal CXCL10 directs CD8+ T-cell recruitment and control of West Nile virus encephalitis. J Virol (2005) 3.31
Genome-wide association study identifies susceptibility loci for polycystic ovary syndrome on chromosome 2p16.3, 2p21 and 9q33.3. Nat Genet (2010) 3.02
Efficient and specific modifications of the Drosophila genome by means of an easy TALEN strategy. J Genet Genomics (2012) 2.98
Highly efficient genome modifications mediated by CRISPR/Cas9 in Drosophila. Genetics (2013) 2.87
Quorum-sensing control of biofilm factors in Staphylococcus epidermidis. J Infect Dis (2003) 2.82
Heat Loss Prevention (HeLP) in the delivery room: A randomized controlled trial of polyethylene occlusive skin wrapping in very preterm infants. J Pediatr (2004) 2.73
Chromosomal deletions and inversions mediated by TALENs and CRISPR/Cas in zebrafish. Nucleic Acids Res (2013) 2.73
TALEN-mediated precise genome modification by homologous recombination in zebrafish. Nat Methods (2013) 2.64
Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution. PLoS One (2011) 2.29
Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain. J Infect Dis (2004) 2.29
An adenosine nucleoside inhibitor of dengue virus. Proc Natl Acad Sci U S A (2009) 2.20
Sperm, but not oocyte, DNA methylome is inherited by zebrafish early embryos. Cell (2013) 2.16
Tau accumulation activates the unfolded protein response by impairing endoplasmic reticulum-associated degradation. J Neurosci (2013) 2.04
Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome. Nat Genet (2012) 2.02
Herb network construction and co-module analysis for uncovering the combination rule of traditional Chinese herbal formulae. BMC Bioinformatics (2010) 2.00
Network target for screening synergistic drug combinations with application to traditional Chinese medicine. BMC Syst Biol (2011) 1.98
Interference-free determination of ischemia-modified albumin using quantum dot coupled X-ray fluorescence spectroscopy. Biosens Bioelectron (2013) 1.97
Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Proc Natl Acad Sci U S A (2007) 1.96
Local elastic properties of a metallic glass. Nat Mater (2011) 1.88
Staphylococcus aureus CodY negatively regulates virulence gene expression. J Bacteriol (2007) 1.88
HIF-1α and HIF-2α correlate with migration and invasion in gastric cancer. Cancer Biol Ther (2010) 1.83
Genotype-phenotype correlations in alternating hemiplegia of childhood. Neurology (2014) 1.82
A topology-constrained distance network algorithm for protein structure determination from NOESY data. Proteins (2006) 1.79
Imaging findings of biliary hamartomas. World J Gastroenterol (2005) 1.77
Direct targets of CodY in Staphylococcus aureus. J Bacteriol (2010) 1.76
Three-column fixation for complex tibial plateau fractures. J Orthop Trauma (2010) 1.73
An apoptosis-differentiation program in human polymorphonuclear leukocytes facilitates resolution of inflammation. J Leukoc Biol (2003) 1.66
Expression of human apoAII in transgenic rabbits leads to dyslipidemia: a new model for combined hyperlipidemia. Arterioscler Thromb Vasc Biol (2009) 1.64
Randomized head-to-head comparison of pitavastatin, atorvastatin, and rosuvastatin for safety and efficacy (quantity and quality of LDL): the PATROL trial. Circ J (2011) 1.64
DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape. Nat Genet (2013) 1.64
Genetic structure and diversity of cultivated soybean (Glycine max (L.) Merr.) landraces in China. Theor Appl Genet (2008) 1.62
Pancreatic stump-closed pancreaticojejunostomy can be performed safely in normal soft pancreas cases. J Surg Res (2011) 1.61
CXCR4 antagonism increases T cell trafficking in the central nervous system and improves survival from West Nile virus encephalitis. Proc Natl Acad Sci U S A (2008) 1.60
Making the cut: protease-mediated regulation of angiogenesis. Exp Cell Res (2006) 1.59
Multiple organ infection and the pathogenesis of SARS. J Exp Med (2005) 1.58
Changes of Esophagogastric Junctional Adenocarcinoma and Gastroesophageal Reflux Disease Among Surgical Patients During 1988-2012: A Single-institution, High-volume Experience in China. Ann Surg (2016) 1.57
Analysis of metabolomic PCA data using tree diagrams. Anal Biochem (2009) 1.57
Hydrogen peroxide in plants: a versatile molecule of the reactive oxygen species network. J Integr Plant Biol (2008) 1.55
Fluoxetine administered to juvenile monkeys: effects on the serotonin transporter and behavior. Am J Psychiatry (2014) 1.54
Cluster K mycobacteriophages: insights into the evolutionary origins of mycobacteriophage TM4. PLoS One (2011) 1.54
Antitumor activity of a novel bispecific antibody that targets the ErbB2/ErbB3 oncogenic unit and inhibits heregulin-induced activation of ErbB3. Mol Cancer Ther (2012) 1.53
Detection of nucleic acids with graphene nanopores: ab initio characterization of a novel sequencing device. Nano Lett (2010) 1.53
Tsc2 gene inactivation causes a more severe epilepsy phenotype than Tsc1 inactivation in a mouse model of tuberous sclerosis complex. Hum Mol Genet (2010) 1.53
Synthetic human parathyroid hormone 1-34 replacement therapy: a randomized crossover trial comparing pump versus injections in the treatment of chronic hypoparathyroidism. J Clin Endocrinol Metab (2011) 1.50
Rgg coordinates virulence factor synthesis and metabolism in Streptococcus pyogenes. J Bacteriol (2003) 1.50
Distinct RNA elements confer specificity to flavivirus RNA cap methylation events. J Virol (2007) 1.48
Tumor necrosis factor alpha protects against lethal West Nile virus infection by promoting trafficking of mononuclear leukocytes into the central nervous system. J Virol (2008) 1.48
A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome Res (2013) 1.48
Glycerol-3-phosphate acquisition in spirochetes: distribution and biological activity of glycerophosphodiester phosphodiesterase (GlpQ) among Borrelia species. J Bacteriol (2003) 1.47
Impact of glycemic control on the clinical outcome in diabetic patients with percutaneous coronary intervention--from the FU-registry. Circ J (2011) 1.45
An efficient and effective region-based image retrieval framework. IEEE Trans Image Process (2004) 1.45
Validity of maternal and perinatal risk factors reported on fetal death certificates. Am J Public Health (2005) 1.45
MUC1 mucin stabilizes and activates hypoxia-inducible factor 1 alpha to regulate metabolism in pancreatic cancer. Proc Natl Acad Sci U S A (2012) 1.44
Staphylococcus epidermidis polysaccharide intercellular adhesin production significantly increases during tricarboxylic acid cycle stress. J Bacteriol (2005) 1.44
West Nile virus methyltransferase catalyzes two methylations of the viral RNA cap through a substrate-repositioning mechanism. J Virol (2008) 1.44
Lifestyle changes through the use of delivered meals and dietary counseling in a single-blind study. The STYLIST study. Circ J (2012) 1.44
Antiproliferative, antiinvasive, and proapoptotic activity of folate receptor α-targeted liposomal doxorubicin in nonfunctional pituitary adenoma cells. Endocrinology (2013) 1.43
Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells. BMC Mol Biol (2009) 1.42
MicroRNA-26b is underexpressed in human breast cancer and induces cell apoptosis by targeting SLC7A11. FEBS Lett (2011) 1.40
Donor-recipient mismatch for common gene deletion polymorphisms in graft-versus-host disease. Nat Genet (2009) 1.40
TALEN or Cas9 - rapid, efficient and specific choices for genome modifications. J Genet Genomics (2013) 1.40
Traditional Chinese medicine network pharmacology: theory, methodology and application. Chin J Nat Med (2013) 1.39
Error-prone polymerase, DNA polymerase IV, is responsible for transient hypermutation during adaptive mutation in Escherichia coli. J Bacteriol (2003) 1.39
C-reactive protein in atherosclerotic lesions: its origin and pathophysiological significance. Am J Pathol (2005) 1.37
Coordinated regulation of anthocyanin biosynthesis in Chinese bayberry (Myrica rubra) fruit by a R2R3 MYB transcription factor. Planta (2010) 1.36
An integrated platform for automated analysis of protein NMR structures. Methods Enzymol (2005) 1.35
Knockout of 'metal-responsive transcription factor' MTF-1 in Drosophila by homologous recombination reveals its central role in heavy metal homeostasis. EMBO J (2003) 1.33
Flavivirus methyltransferase: a novel antiviral target. Antiviral Res (2008) 1.31
Staphylococcus aureus ClpC is required for stress resistance, aconitase activity, growth recovery, and death. J Bacteriol (2005) 1.31
Cost-effectiveness analysis of chemotherapy for advanced gastric cancer in China. World J Gastroenterol (2008) 1.31
Plasmonic substrates for multiplexed protein microarrays with femtomolar sensitivity and broad dynamic range. Nat Commun (2011) 1.30
NAADP-mediated Ca2+ signaling via type 1 ryanodine receptor in T cells revealed by a synthetic NAADP antagonist. Proc Natl Acad Sci U S A (2009) 1.30
A study of cycling induced degradation mechanisms in Si nanocrystal memory devices. Nanotechnology (2011) 1.30
The soybean Dof-type transcription factor genes, GmDof4 and GmDof11, enhance lipid content in the seeds of transgenic Arabidopsis plants. Plant J (2007) 1.29
A dysfunctional tricarboxylic acid cycle enhances fitness of Staphylococcus epidermidis during β-lactam stress. MBio (2013) 1.28
Overexpression of candidate tumor suppressor ECRG4 inhibits glioma proliferation and invasion. J Exp Clin Cancer Res (2010) 1.28
Utilities for quantifying separation in PCA/PLS-DA scores plots. Anal Biochem (2012) 1.28
Staphylococcus aureus biofilm metabolism and the influence of arginine on polysaccharide intercellular adhesin synthesis, biofilm formation, and pathogenesis. Infect Immun (2007) 1.27
Visualization of monoaminergic neurons and neurotoxicity of MPTP in live transgenic zebrafish. Dev Biol (2007) 1.26
Not just 'a few wisps': real-time measurement of tobacco smoke at entrances to office buildings. Tob Control (2010) 1.25
Genome sequence of the milbemycin-producing bacterium Streptomyces bingchenggensis. J Bacteriol (2010) 1.25
Correlation between serum CA724 and gastric cancer: multiple analyses based on Chinese population. Mol Biol Rep (2012) 1.24
Prodrugs forming high drug loading multifunctional nanocapsules for intracellular cancer drug delivery. J Am Chem Soc (2010) 1.24
Total vs. proximal gastrectomy for proximal gastric cancer: a systematic review and meta-analysis. Hepatogastroenterology (2012) 1.24
Negative impact of noise on the principal component analysis of NMR data. J Magn Reson (2005) 1.24