Published in Microb Biotechnol on October 21, 2010
Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor. Proc Natl Acad Sci U S A (2011) 2.22
Consumption of human milk glycoconjugates by infant-associated bifidobacteria: mechanisms and implications. Microbiology (2013) 1.25
Comparative genomics of the Bifidobacterium breve taxon. BMC Genomics (2014) 1.07
Comparative genomics of Bifidobacterium animalis subsp. lactis reveals a strict monophyletic bifidobacterial taxon. Appl Environ Microbiol (2013) 0.98
Metabolism of sialic acid by Bifidobacterium breve UCC2003. Appl Environ Microbiol (2014) 0.97
Cross-feeding by Bifidobacterium breve UCC2003 during co-cultivation with Bifidobacterium bifidum PRL2010 in a mucin-based medium. BMC Microbiol (2014) 0.95
Transcriptional and functional characterization of genetic elements involved in galacto-oligosaccharide utilization by Bifidobacterium breve UCC2003. Microb Biotechnol (2012) 0.93
Utilization of galactooligosaccharides by Bifidobacterium longum subsp. infantis isolates. Food Microbiol (2012) 0.92
Transcription of two adjacent carbohydrate utilization gene clusters in Bifidobacterium breve UCC2003 is controlled by LacI- and repressor open reading frame kinase (ROK)-type regulators. Appl Environ Microbiol (2014) 0.89
Metabolism of four α-glycosidic linkage-containing oligosaccharides by Bifidobacterium breve UCC2003. Appl Environ Microbiol (2013) 0.87
Identification of restriction-modification systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT sequencing and associated methylome analysis. PLoS One (2014) 0.87
Identification and characterization of an oleate hydratase-encoding gene from Bifidobacterium breve. Bioengineered (2013) 0.87
Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut. Bioeng Bugs (2012) 0.86
Genomics of the Genus Bifidobacterium Reveals Species-Specific Adaptation to the Glycan-Rich Gut Environment. Appl Environ Microbiol (2015) 0.85
Bifidobacteria and Their Role as Members of the Human Gut Microbiota. Front Microbiol (2016) 0.84
Crystallization and preliminary crystallographic analysis of GanB, a GH42 intracellular β-galactosidase from Geobacillus stearothermophilus. Acta Crystallogr Sect F Struct Biol Cryst Commun (2013) 0.82
Cloning, expression and characterization of a β-D-xylosidase from Lactobacillus rossiae DSM 15814(T). Microb Cell Fact (2016) 0.79
Transcriptional Regulation of Carbohydrate Utilization Pathways in the Bifidobacterium Genus. Front Microbiol (2016) 0.77
Lactic acid bacteria: life after genomics. Microb Biotechnol (2011) 0.76
Characterization of a bifidobacterial system that utilizes galacto-oligosaccharides. Microbiology (2015) 0.76
Mechanistic Study of Water Insoluble Yeast Glucans Utilization in Bifidobacterium breve Strain JCM1192. Appl Environ Microbiol (2017) 0.75
Proteinaceous Molecules Mediating Bifidobacterium-Host Interactions. Front Microbiol (2016) 0.75
The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions. BMC Genomics (2017) 0.75
Effect of mutations on the thermostability of Aspergillus aculeatus β-1,4-galactanase. Comput Struct Biotechnol J (2015) 0.75
Bifidobacterium breve UCC2003 metabolises the human milk oligosaccharides lacto-N-tetraose and lacto-N-neo-tetraose through overlapping, yet distinct pathways. Sci Rep (2016) 0.75
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res (2008) 27.83
The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc Natl Acad Sci U S A (2002) 7.21
Controlled gene expression systems for Lactococcus lactis with the food-grade inducer nisin. Appl Environ Microbiol (1996) 7.12
Evolution of symbiotic bacteria in the distal human intestine. PLoS Biol (2007) 5.79
Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12. J Biol Chem (2001) 4.35
Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiol Mol Biol Rev (2007) 4.13
Aspergillus enzymes involved in degradation of plant cell wall polysaccharides. Microbiol Mol Biol Rev (2001) 3.77
A system to generate chromosomal mutations in Lactococcus lactis which allows fast analysis of targeted genes. J Bacteriol (1995) 3.76
Genome-scale analyses of health-promoting bacteria: probiogenomics. Nat Rev Microbiol (2008) 3.25
10 years of the nisin-controlled gene expression system (NICE) in Lactococcus lactis. Appl Microbiol Biotechnol (2005) 2.80
A microbial world within us. Mol Microbiol (2006) 2.76
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems. J Mol Biol (1999) 2.29
Bacterial metabolism and health-related effects of galacto-oligosaccharides and other prebiotics. J Appl Microbiol (2008) 1.91
The lactose repressor system: paradigms for regulation, allosteric behavior and protein folding. Cell Mol Life Sci (2007) 1.70
The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity. PLoS Genet (2009) 1.64
Improvement and optimization of two engineered phage resistance mechanisms in Lactococcus lactis. Appl Environ Microbiol (2001) 1.59
Modulation of the microbial ecology of the human colon by probiotics, prebiotics and synbiotics to enhance human health: an overview of enabling science and potential applications. FEMS Microbiol Ecol (2005) 1.50
Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains. Appl Environ Microbiol (2006) 1.47
Bifidobacterium carbohydrases-their role in breakdown and synthesis of (potential) prebiotics. Mol Nutr Food Res (2008) 1.39
Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003. Appl Environ Microbiol (2008) 1.38
Allostery in the LacI/GalR family: variations on a theme. Curr Opin Microbiol (2009) 1.37
Mixed-species genomic microarray analysis of fecal samples reveals differential transcriptional responses of bifidobacteria in breast- and formula-fed infants. Appl Environ Microbiol (2009) 1.35
Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003. Microb Biotechnol (2008) 1.33
Sugar transport systems of Bifidobacterium longum NCC2705. J Mol Microbiol Biotechnol (2007) 1.33
Identification and characterization of a fructose phosphotransferase system in Bifidobacterium breve UCC2003. Appl Environ Microbiol (2006) 1.32
Lactose-over-glucose preference in Bifidobacterium longum NCC2705: glcP, encoding a glucose transporter, is subject to lactose repression. J Bacteriol (2006) 1.28
Transcriptional regulation and characterization of a novel beta-fructofuranosidase-encoding gene from Bifidobacterium breve UCC2003. Appl Environ Microbiol (2005) 1.27
From bacterial genome to functionality; case bifidobacteria. Int J Food Microbiol (2007) 1.27
Functional analysis of the pBC1 replicon from Bifidobacterium catenulatum L48. Appl Microbiol Biotechnol (2007) 1.12
The normal intestinal microbiota. Curr Opin Infect Dis (2007) 1.11
Fermented functional foods based on probiotics and their biogenic metabolites. Curr Opin Biotechnol (2005) 1.10
Ribose utilization by the human commensal Bifidobacterium breve UCC2003. Microb Biotechnol (2009) 1.09
Two closely related ABC transporters in Streptococcus mutans are involved in disaccharide and/or oligosaccharide uptake. J Bacteriol (2007) 1.06
Bifidobacteria: from ecology to genomics. Front Biosci (Landmark Ed) (2009) 1.05
Characterization of the Erwinia chrysanthemi Gan locus, involved in galactan catabolism. J Bacteriol (2007) 1.03
Characterization of two novel alpha-glucosidases from Bifidobacterium breve UCC2003. Appl Environ Microbiol (2008) 0.98
Bifidobacterium longum endogalactanase liberates galactotriose from type I galactans. Appl Environ Microbiol (2005) 0.93
Molecular dissection of a bifidobacterial replicon. Appl Environ Microbiol (2007) 0.93
Culture-independent analysis of fecal microbiota in infants, with special reference to Bifidobacterium species. FEMS Microbiol Lett (2005) 0.93
Evidence that galactanase A from Pseudomonas fluorescens subspecies cellulosa is a retaining family 53 glycosyl hydrolase in which E161 and E270 are the catalytic residues. Biochemistry (1997) 0.91
The beta-1,4-endogalactanase A gene from Aspergillus niger is specifically induced on arabinose and galacturonic acid and plays an important role in the degradation of pectic hairy regions. Eur J Biochem (2002) 0.87
Purification and characterization of an exo-1,4-beta-galactanase from a strain of Bacillus subtilis. Eur J Biochem (1990) 0.84
Prebiotics, synbiotics and inflammatory bowel disease. Mol Nutr Food Res (2008) 0.82
Characterization of a thermostable endo-beta-1,4-D-galactanase from the hyperthermophile Thermotoga maritima. Biosci Biotechnol Biochem (2006) 0.81
Gut microbiota composition correlates with diet and health in the elderly. Nature (2012) 6.94
Composition, variability, and temporal stability of the intestinal microbiota of the elderly. Proc Natl Acad Sci U S A (2010) 5.02
Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiol Mol Biol Rev (2007) 4.13
Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363. J Bacteriol (2007) 3.43
Fatty acids from fish: the anti-inflammatory potential of long-chain omega-3 fatty acids. Nutr Rev (2010) 3.30
Genome-scale analyses of health-promoting bacteria: probiogenomics. Nat Rev Microbiol (2008) 3.25
Diversity of bifidobacteria within the infant gut microbiota. PLoS One (2012) 2.71
Multireplicon genome architecture of Lactobacillus salivarius. Proc Natl Acad Sci U S A (2006) 2.43
Exploring the diversity of the bifidobacterial population in the human intestinal tract. Appl Environ Microbiol (2009) 2.34
Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor. Proc Natl Acad Sci U S A (2011) 2.22
Genome sequence of Lactobacillus helveticus, an organism distinguished by selective gene loss and insertion sequence element expansion. J Bacteriol (2007) 2.15
Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging. Proc Natl Acad Sci U S A (2010) 2.14
Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection. Proc Natl Acad Sci U S A (2012) 2.09
Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp. salivarius UCC118. Microbiology (2002) 1.92
Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek (2002) 1.90
The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria. J Bacteriol (2002) 1.71
High-throughput sequencing reveals the incomplete, short-term recovery of infant gut microbiota following parenteral antibiotic treatment with ampicillin and gentamicin. Antimicrob Agents Chemother (2012) 1.69
The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity. PLoS Genet (2009) 1.64
Human gut microbiota and bifidobacteria: from composition to functionality. Antonie Van Leeuwenhoek (2008) 1.62
Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective. Cell Mol Life Sci (2013) 1.57
Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol. PLoS One (2013) 1.56
Genomics and ecological overview of the genus Bifidobacterium. Int J Food Microbiol (2010) 1.53
Diversity of the genus Lactobacillus revealed by comparative genomics of five species. Microbiology (2006) 1.52
Bacteria as vitamin suppliers to their host: a gut microbiota perspective. Curr Opin Biotechnol (2012) 1.51
Carbohydrate metabolism in Bifidobacteria. Genes Nutr (2011) 1.50
Bacteriophage Tuc2009 encodes a tail-associated cell wall-degrading activity. J Bacteriol (2004) 1.49
Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118. Appl Environ Microbiol (2006) 1.48
Programming infant gut microbiota: influence of dietary and environmental factors. Curr Opin Biotechnol (2010) 1.48
Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains. Appl Environ Microbiol (2006) 1.47
Anatomy of a lactococcal phage tail. J Bacteriol (2006) 1.46
The genus Lactobacillus--a genomic basis for understanding its diversity. FEMS Microbiol Lett (2007) 1.45
Insights into the taxonomy, genetics and physiology of bifidobacteria. Antonie Van Leeuwenhoek (2004) 1.43
Microbiomic analysis of the bifidobacterial population in the human distal gut. ISME J (2009) 1.43
Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria. Trends Microbiol (2012) 1.42
Structural characterization and assembly of the distal tail structure of the temperate lactococcal bacteriophage TP901-1. J Bacteriol (2005) 1.42
Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria. Antonie Van Leeuwenhoek (2006) 1.41
Identification of the lower baseplate protein as the antireceptor of the temperate lactococcal bacteriophages TP901-1 and Tuc2009. J Bacteriol (2006) 1.39
Bifidobacteria and humans: our special friends, from ecological to genomics perspectives. J Sci Food Agric (2013) 1.39
A five-strain probiotic combination reduces pathogen shedding and alleviates disease signs in pigs challenged with Salmonella enterica Serovar Typhimurium. Appl Environ Microbiol (2007) 1.38
Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003. Appl Environ Microbiol (2008) 1.38
Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism. Proc Natl Acad Sci U S A (2012) 1.37
A topological model of the baseplate of lactococcal phage Tuc2009. J Biol Chem (2007) 1.36
Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium-host interactions. Proc Natl Acad Sci U S A (2013) 1.36
High resolution in vivo bioluminescent imaging for the study of bacterial tumour targeting. PLoS One (2012) 1.36
Diversity, ecology and intestinal function of bifidobacteria. Microb Cell Fact (2014) 1.35
Analysis of bifidobacterial evolution using a multilocus approach. Int J Syst Evol Microbiol (2006) 1.34
Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003. Microb Biotechnol (2008) 1.33
Surface microflora of four smear-ripened cheeses. Appl Environ Microbiol (2005) 1.33
Identification and characterization of a fructose phosphotransferase system in Bifidobacterium breve UCC2003. Appl Environ Microbiol (2006) 1.32
Riboflavin production in Lactococcus lactis: potential for in situ production of vitamin-enriched foods. Appl Environ Microbiol (2004) 1.32
Probing direct interactions between CodY and the oppD promoter of Lactococcus lactis. J Bacteriol (2005) 1.29
Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei. Appl Environ Microbiol (2006) 1.28
Sequence and comparative genomic analysis of lactococcal bacteriophages jj50, 712 and P008: evolutionary insights into the 936 phage species. FEMS Microbiol Lett (2006) 1.28
Transcriptional regulation and characterization of a novel beta-fructofuranosidase-encoding gene from Bifidobacterium breve UCC2003. Appl Environ Microbiol (2005) 1.27
From bacterial genome to functionality; case bifidobacteria. Int J Food Microbiol (2007) 1.27
Phage lysin LysK can be truncated to its CHAP domain and retain lytic activity against live antibiotic-resistant staphylococci. Appl Environ Microbiol (2008) 1.26
Bioactive peptides from muscle sources: meat and fish. Nutrients (2011) 1.25
Comparative genomics of lactic acid bacteria reveals a niche-specific gene set. BMC Microbiol (2009) 1.24
Prophage-like elements in bifidobacteria: insights from genomics, transcription, integration, distribution, and phylogenetic analysis. Appl Environ Microbiol (2005) 1.24
Comparative genomics of the genus Bifidobacterium. Microbiology (2010) 1.24
Identification and characterization of phage-resistance genes in temperate lactococcal bacteriophages. Mol Microbiol (2002) 1.24
Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut. PLoS One (2012) 1.23
Composition of the early intestinal microbiota: knowledge, knowledge gaps and the use of high-throughput sequencing to address these gaps. Gut Microbes (2012) 1.23
High-throughput sequencing for detection of subpopulations of bacteria not previously associated with artisanal cheeses. Appl Environ Microbiol (2012) 1.23
Solution and electron microscopy characterization of lactococcal phage baseplates expressed in Escherichia coli. J Struct Biol (2010) 1.22
Improving gastric transit, gastrointestinal persistence and therapeutic efficacy of the probiotic strain Bifidobacterium breve UCC2003. Microbiology (2007) 1.20
Molecular and transcriptional analysis of the temperate lactococcal bacteriophage Tuc2009. Virology (2004) 1.20
The riboflavin transporter RibU in Lactococcus lactis: molecular characterization of gene expression and the transport mechanism. J Bacteriol (2006) 1.20
The Bacillus subtilis transition state regulator AbrB binds to the -35 promoter region of comK. FEMS Microbiol Lett (2003) 1.20
Relative ability of orally administered Lactobacillus murinus to predominate and persist in the porcine gastrointestinal tract. Appl Environ Microbiol (2004) 1.18
The complex microbiota of raw milk. FEMS Microbiol Rev (2013) 1.18
Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: genetic, transcriptional, and phylogenetic analyses. Appl Environ Microbiol (2004) 1.17
Heterologous expression of BetL, a betaine uptake system, enhances the stress tolerance of Lactobacillus salivarius UCC118. Appl Environ Microbiol (2006) 1.17