Published in Proc Natl Acad Sci U S A on June 17, 2013
Gut biogeography of the bacterial microbiota. Nat Rev Microbiol (2015) 1.66
Diversity, ecology and intestinal function of bifidobacteria. Microb Cell Fact (2014) 1.35
Comparative genomics of the Bifidobacterium breve taxon. BMC Genomics (2014) 1.07
Discovering probiotic microorganisms: in vitro, in vivo, genetic and omics approaches. Front Microbiol (2015) 0.97
Bifidobacterium bifidum as an example of a specialized human gut commensal. Front Microbiol (2014) 0.93
BopA does not have a major role in the adhesion of Bifidobacterium bifidum to intestinal epithelial cells, extracellular matrix proteins, and mucus. Appl Environ Microbiol (2013) 0.92
Genomic characterization and transcriptional studies of the starch-utilizing strain Bifidobacterium adolescentis 22L. Appl Environ Microbiol (2014) 0.91
Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems. BMC Genomics (2015) 0.91
Phenotypical analysis of the Lactobacillus rhamnosus GG fimbrial spaFED operon: surface expression and functional characterization of recombinant SpaFED pili in Lactococcus lactis. PLoS One (2014) 0.86
Molecular Players Involved in the Interaction Between Beneficial Bacteria and the Immune System. Front Microbiol (2015) 0.86
Bifidobacterium bifidum PRL2010 modulates the host innate immune response. Appl Environ Microbiol (2013) 0.86
Bifidobacteria-host interactions--an update on colonisation factors. Biomed Res Int (2014) 0.85
Impact of kefir derived Lactobacillus kefiri on the mucosal immune response and gut microbiota. J Immunol Res (2015) 0.85
Complete Genome Sequence of Bifidobacterium longum GT15: Identification and Characterization of Unique and Global Regulatory Genes. Microb Ecol (2015) 0.83
Adhesion Properties of Lactic Acid Bacteria on Intestinal Mucin. Microorganisms (2016) 0.82
Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis. Sci Rep (2016) 0.82
TgaA, a VirB1-like component belonging to a putative type IV secretion system of Bifidobacterium bifidum MIMBb75. Appl Environ Microbiol (2014) 0.81
Expression of fluorescent proteins in bifidobacteria for analysis of host-microbe interactions. Appl Environ Microbiol (2014) 0.81
Deciphering bifidobacterial-mediated metabolic interactions and their impact on gut microbiota by a multi-omics approach. ISME J (2016) 0.81
Colonization of C57BL/6 Mice by a Potential Probiotic Bifidobacterium bifidum Strain under Germ-Free and Specific Pathogen-Free Conditions and during Experimental Colitis. PLoS One (2015) 0.80
Methodological issues in the study of intestinal microbiota in irritable bowel syndrome. World J Gastroenterol (2014) 0.80
Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain. Appl Environ Microbiol (2014) 0.80
A Single Mutation in the Gene Responsible for the Mucoid Phenotype of Bifidobacterium animalis subsp. lactis Confers Surface and Functional Characteristics. Appl Environ Microbiol (2015) 0.79
Glycan cross-feeding activities between bifidobacteria under in vitro conditions. Front Microbiol (2015) 0.79
Proteomic Profiling of Bifidobacterium bifidum S17 Cultivated Under In Vitro Conditions. Front Microbiol (2016) 0.78
Discovery of a conjugative megaplasmid in Bifidobacterium breve. Appl Environ Microbiol (2014) 0.78
Adhesion properties of a putative polymorphic fimbrial subunit protein from Bifidobacterium longum subsp. longum. Biosci Microbiota Food Health (2015) 0.77
The Microbiota and Health Promoting Characteristics of the Fermented Beverage Kefir. Front Microbiol (2016) 0.77
Genome Analysis and Characterisation of the Exopolysaccharide Produced by Bifidobacterium longum subsp. longum 35624™. PLoS One (2016) 0.77
Pilus biogenesis of Gram-positive bacteria: Roles of sortases and implications for assembly. Protein Sci (2017) 0.76
Immunoreactive Proteins of Bifidobacterium longum ssp. longum CCM 7952 and Bifidobacterium longum ssp. longum CCDM 372 Identified by Gnotobiotic Mono-Colonized Mice Sera, Immune Rabbit Sera and Non-immune Human Sera. Front Microbiol (2016) 0.76
Variations in the Post-weaning Human Gut Metagenome Profile As Result of Bifidobacterium Acquisition in the Western Microbiome. Front Microbiol (2016) 0.76
A Critical Evaluation of Bifidobacterial Adhesion to the Host Tissue. Front Microbiol (2016) 0.76
Bifidobacteria grown on human milk oligosaccharides downregulate the expression of inflammation-related genes in Caco-2 cells. BMC Microbiol (2015) 0.76
Flagellar Cap Protein FliD Mediates Adherence of Atypical Enteropathogenic Escherichia coli to Enterocyte Microvilli. Infect Immun (2016) 0.75
Genomic analysis of three Bifidobacterium species isolated from the calf gastrointestinal tract. Sci Rep (2016) 0.75
A Comparative Characterization of Different Host-sourced Lactobacillus ruminis Strains and Their Adhesive, Inhibitory, and Immunomodulating Functions. Front Microbiol (2017) 0.75
The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions. BMC Genomics (2017) 0.75
Consumption of a Bifidobacterium bifidum Strain for 4 Weeks Modulates Dominant Intestinal Bacterial Taxa and Fecal Butyrate in Healthy Adults. Appl Environ Microbiol (2016) 0.75
Enterococcus faecalis Ebp pili are important for cell-cell aggregation and intraspecies gene transfer. Microbiology (2016) 0.75
Proteinaceous Molecules Mediating Bifidobacterium-Host Interactions. Front Microbiol (2016) 0.75
Exploring Amino Acid Auxotrophy in Bifidobacterium bifidum PRL2010. Front Microbiol (2015) 0.75
Probiotics and Probiotic Metabolic Product Improved Intestinal Function and Ameliorated LPS-Induced Injury in Rats. Curr Microbiol (2017) 0.75
The sortase-dependent fimbriome of the genus Bifidobacterium: extracellular structures with potential to modulate microbe-host dialogue. Appl Environ Microbiol (2017) 0.75
Determination of Resistant Starch Assimilating Bacteria in Fecal Samples of Mice by In vitro RNA-Based Stable Isotope Probing. Front Microbiol (2017) 0.75
Novel Molecular Insights about Lactobacillar Sortase-Dependent Piliation. Int J Mol Sci (2017) 0.75
Bifidobacterium bifidum Extracellular Sialidase Enhances Adhesion to the Mucosal Surface and Supports Carbohydrate Assimilation. MBio (2017) 0.75
In Silico Screening of the Human Gut Metaproteome Identifies Th17-Promoting Peptides Encrypted in Proteins of Commensal Bacteria. Front Microbiol (2017) 0.75
A microbial symbiosis factor prevents intestinal inflammatory disease. Nature (2008) 13.15
Gut flora in health and disease. Lancet (2003) 9.85
The effect of infections on susceptibility to autoimmune and allergic diseases. N Engl J Med (2002) 9.26
Tumor necrosis factor signaling. Cell Death Differ (2003) 8.48
Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein. Proc Natl Acad Sci U S A (2009) 4.61
Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host. PLoS Biol (2006) 4.27
Pili in gram-positive pathogens. Nat Rev Microbiol (2006) 4.21
Host interactions of probiotic bacterial surface molecules: comparison with commensals and pathogens. Nat Rev Microbiol (2010) 3.45
The ESAT-6/WXG100 superfamily -- and a new Gram-positive secretion system? Trends Microbiol (2002) 3.42
Endocarditis and biofilm-associated pili of Enterococcus faecalis. J Clin Invest (2006) 3.33
Genome-scale analyses of health-promoting bacteria: probiogenomics. Nat Rev Microbiol (2008) 3.25
Regulation of induced colonic inflammation by Lactobacillus acidophilus deficient in lipoteichoic acid. Proc Natl Acad Sci U S A (2011) 3.19
Pili in Gram-positive bacteria: assembly, involvement in colonization and biofilm development. Trends Microbiol (2008) 2.83
Sortases and pilin elements involved in pilus assembly of Corynebacterium diphtheriae. Mol Microbiol (2004) 2.80
Assembly of pili in Gram-positive bacteria. Trends Microbiol (2004) 2.76
Diversity of bifidobacteria within the infant gut microbiota. PLoS One (2012) 2.71
Bacterial adhesins in host-microbe interactions. Cell Host Microbe (2009) 2.43
Pili with strong attachments: Gram-positive bacteria do it differently. Mol Microbiol (2006) 2.36
Exploring the diversity of the bifidobacterial population in the human intestinal tract. Appl Environ Microbiol (2009) 2.34
Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor. Proc Natl Acad Sci U S A (2011) 2.22
Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging. Proc Natl Acad Sci U S A (2010) 2.14
Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection. Proc Natl Acad Sci U S A (2012) 2.09
Novel fold and assembly of the repetitive B region of the Staphylococcus aureus collagen-binding surface protein. Structure (2000) 1.87
Surface proteins that promote adherence of Staphylococcus aureus to human desquamated nasal epithelial cells. BMC Microbiol (2009) 1.68
Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria. Trends Microbiol (2012) 1.42
Proposed model: mechanisms of immunomodulation induced by probiotic bacteria. Clin Vaccine Immunol (2007) 1.38
Clumping factor B, a fibrinogen-binding MSCRAMM (microbial surface components recognizing adhesive matrix molecules) adhesin of Staphylococcus aureus, also binds to the tail region of type I cytokeratin 10. J Biol Chem (2004) 1.36
The role of microbes in developmental immunologic programming. Pediatr Res (2011) 1.33
Functional analysis of Lactobacillus rhamnosus GG pili in relation to adhesion and immunomodulatory interactions with intestinal epithelial cells. Appl Environ Microbiol (2011) 1.31
Implication of an outer surface lipoprotein in adhesion of Bifidobacterium bifidum to Caco-2 cells. Appl Environ Microbiol (2008) 1.21
The major pilin subunit of the AAF/II fimbriae from enteroaggregative Escherichia coli mediates binding to extracellular matrix proteins. Infect Immun (2008) 1.18
The Actinomyces oris type 2 fimbrial shaft FimA mediates co-aggregation with oral streptococci, adherence to red blood cells and biofilm development. Mol Microbiol (2010) 1.17
Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium. Microb Cell Fact (2011) 1.12
Coaggregations among oral bacteria. Methods Enzymol (1995) 1.09
Distinct gut-derived lactic acid bacteria elicit divergent dendritic cell-mediated NK cell responses. Int Immunol (2007) 1.01
Contribution of the Ler- and H-NS-regulated long polar fimbriae of Escherichia coli O157:H7 during binding to tissue-cultured cells. Infect Immun (2008) 0.99
Mucosal biofilm communities in the human intestinal tract. Adv Appl Microbiol (2011) 0.96
Probiotics regulate the expression of COX-2 in intestinal epithelial cells. Nutr Cancer (2009) 0.94
Bifidobacterium bifidum actively changes the gene expression profile induced by Lactobacillus acidophilus in murine dendritic cells. PLoS One (2010) 0.92
Long polar fimbriae of enterohemorrhagic Escherichia coli O157:H7 bind to extracellular matrix proteins. Infect Immun (2011) 0.92
The flagella of an atypical enteropathogenic Escherichia coli strain are required for efficient interaction with and stimulation of interleukin-8 production by enterocytes in vitro. Infect Immun (2009) 0.91
Study of the adhesion of Bifidobacterium bifidum MIMBb75 to human intestinal cell lines. Curr Microbiol (2009) 0.90
The role of tumor necrosis factor (TNF)-alpha in the antitumor effect of intrapleural injection of Lactobacillus casei strain Shirota in mice. Med Microbiol Immunol (1999) 0.90
Discovering novel bile protection systems in Bifidobacterium breve UCC2003 through functional genomics. Appl Environ Microbiol (2011) 0.88
Human antigen-presenting cells respond differently to gut-derived probiotic bacteria but mediate similar strain-dependent NK and T cell activation. FEMS Immunol Med Microbiol (2007) 0.88
A two-component regulatory system controls autoregulated serpin expression in Bifidobacterium breve UCC2003. Appl Environ Microbiol (2012) 0.87
Anti-inflammatory effects of the genus Bifidobacterium on macrophages by modification of phospho-I kappaB and SOCS gene expression. Int J Exp Pathol (2009) 0.86
The GafD protein of the G (F17) fimbrial complex confers adhesiveness of Escherichia coli to laminin. Infect Immun (1996) 0.84
Microencapsulation of live probiotic bacteria. J Microbiol Biotechnol (2010) 0.79
International network of cancer genome projects. Nature (2010) 20.35
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature (2007) 18.04
Annotating genomes with massive-scale RNA sequencing. Genome Biol (2008) 7.73
Gut microbiota composition correlates with diet and health in the elderly. Nature (2012) 6.94
Composition, variability, and temporal stability of the intestinal microbiota of the elderly. Proc Natl Acad Sci U S A (2010) 5.02
Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiol Mol Biol Rev (2007) 4.13
Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363. J Bacteriol (2007) 3.43
Why public health agencies cannot depend on good laboratory practices as a criterion for selecting data: the case of bisphenol A. Environ Health Perspect (2008) 3.27
Genome-scale analyses of health-promoting bacteria: probiogenomics. Nat Rev Microbiol (2008) 3.25
Diversity of bifidobacteria within the infant gut microbiota. PLoS One (2012) 2.71
Characterisation of a Bifidobacterium strain with acquired resistance to cholate--a preliminary study. Int J Food Microbiol (2003) 2.66
MYO1E mutations and childhood familial focal segmental glomerulosclerosis. N Engl J Med (2011) 2.65
Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature (2010) 2.61
Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq. Plant Physiol (2010) 2.46
Multireplicon genome architecture of Lactobacillus salivarius. Proc Natl Acad Sci U S A (2006) 2.43
Exploring the diversity of the bifidobacterial population in the human intestinal tract. Appl Environ Microbiol (2009) 2.34
Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor. Proc Natl Acad Sci U S A (2011) 2.22
Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging. Proc Natl Acad Sci U S A (2010) 2.14
Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection. Proc Natl Acad Sci U S A (2012) 2.09
Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp. salivarius UCC118. Microbiology (2002) 1.92
Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek (2002) 1.90
The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program. Plant Cell (2012) 1.75
Downregulation of the Petunia hybrida alpha-expansin gene PhEXP1 reduces the amount of crystalline cellulose in cell walls and leads to phenotypic changes in petal limbs. Plant Cell (2004) 1.72
The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria. J Bacteriol (2002) 1.71
Comparative genomics of phages and prophages in lactic acid bacteria. Antonie Van Leeuwenhoek (2002) 1.71
The plasticity of the grapevine berry transcriptome. Genome Biol (2013) 1.65
The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity. PLoS Genet (2009) 1.64
Antibiotics in early life alter the gut microbiome and increase disease incidence in a spontaneous mouse model of autoimmune insulin-dependent diabetes. PLoS One (2015) 1.63
Human gut microbiota and bifidobacteria: from composition to functionality. Antonie Van Leeuwenhoek (2008) 1.62
Arabidopsis nonsymbiotic hemoglobin AHb1 modulates nitric oxide bioactivity. Plant Cell (2004) 1.61
S-nitrosylation of peroxiredoxin II E promotes peroxynitrite-mediated tyrosine nitration. Plant Cell (2007) 1.59
Effect of the adaptation to high bile salts concentrations on glycosidic activity, survival at low PH and cross-resistance to bile salts in Bifidobacterium. Int J Food Microbiol (2004) 1.58
NO signals in the haze: nitric oxide signalling in plant defence. Curr Opin Plant Biol (2009) 1.58
Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective. Cell Mol Life Sci (2013) 1.57
Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol. PLoS One (2013) 1.56
Establishment and development of intestinal microbiota in preterm neonates. FEMS Microbiol Ecol (2011) 1.55
Genomics and ecological overview of the genus Bifidobacterium. Int J Food Microbiol (2010) 1.53
Diversity of the genus Lactobacillus revealed by comparative genomics of five species. Microbiology (2006) 1.52
Bacteria as vitamin suppliers to their host: a gut microbiota perspective. Curr Opin Biotechnol (2012) 1.51
Carbohydrate metabolism in Bifidobacteria. Genes Nutr (2011) 1.50
Bacteriophage Tuc2009 encodes a tail-associated cell wall-degrading activity. J Bacteriol (2004) 1.49
Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118. Appl Environ Microbiol (2006) 1.48
Effects of developmental exposure to bisphenol A on brain and behavior in mice. Environ Res (2008) 1.47
Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains. Appl Environ Microbiol (2006) 1.47
Anatomy of a lactococcal phage tail. J Bacteriol (2006) 1.46
The genus Lactobacillus--a genomic basis for understanding its diversity. FEMS Microbiol Lett (2007) 1.45
Insights into the taxonomy, genetics and physiology of bifidobacteria. Antonie Van Leeuwenhoek (2004) 1.43
Metacaspase activity of Arabidopsis thaliana is regulated by S-nitrosylation of a critical cysteine residue. J Biol Chem (2006) 1.43
Microbiomic analysis of the bifidobacterial population in the human distal gut. ISME J (2009) 1.43
Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria. Trends Microbiol (2012) 1.42
Structural characterization and assembly of the distal tail structure of the temperate lactococcal bacteriophage TP901-1. J Bacteriol (2005) 1.42
Signaling pathways mediating the induction of apple fruitlet abscission. Plant Physiol (2010) 1.41
Some immunomodulatory effects of probiotic bacteria might be due to porcine neutrophil elastase inhibitor, a serpin present in MRS broth. Immunol Lett (2008) 1.41
Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria. Antonie Van Leeuwenhoek (2006) 1.41
Identification of the lower baseplate protein as the antireceptor of the temperate lactococcal bacteriophages TP901-1 and Tuc2009. J Bacteriol (2006) 1.39
Bifidobacteria and humans: our special friends, from ecological to genomics perspectives. J Sci Food Agric (2013) 1.39
Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003. Appl Environ Microbiol (2008) 1.38
Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species. BMC Genomics (2009) 1.37
Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism. Proc Natl Acad Sci U S A (2012) 1.37
A topological model of the baseplate of lactococcal phage Tuc2009. J Biol Chem (2007) 1.36
High resolution in vivo bioluminescent imaging for the study of bacterial tumour targeting. PLoS One (2012) 1.36
Distinct Bifidobacterium strains drive different immune responses in vitro. Int J Food Microbiol (2010) 1.35
Diversity, ecology and intestinal function of bifidobacteria. Microb Cell Fact (2014) 1.35
Proteomic analysis of global changes in protein expression during bile salt exposure of Bifidobacterium longum NCIMB 8809. J Bacteriol (2005) 1.35