Published in Appl Environ Microbiol on August 01, 2006
Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiol Mol Biol Rev (2007) 4.13
Genome-scale analyses of health-promoting bacteria: probiogenomics. Nat Rev Microbiol (2008) 3.25
Microbial degradation of complex carbohydrates in the gut. Gut Microbes (2012) 2.51
Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor. Proc Natl Acad Sci U S A (2011) 2.22
Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon. ISME J (2012) 2.02
Carbohydrate metabolism in Bifidobacteria. Genes Nutr (2011) 1.50
Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003. Appl Environ Microbiol (2008) 1.38
Diversity, ecology and intestinal function of bifidobacteria. Microb Cell Fact (2014) 1.35
Mixed-species genomic microarray analysis of fecal samples reveals differential transcriptional responses of bifidobacteria in breast- and formula-fed infants. Appl Environ Microbiol (2009) 1.35
Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003. Microb Biotechnol (2008) 1.33
Cellodextrin utilization by bifidobacterium breve UCC2003. Appl Environ Microbiol (2011) 1.11
Ribose utilization by the human commensal Bifidobacterium breve UCC2003. Microb Biotechnol (2009) 1.09
Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003. Microb Biotechnol (2010) 1.07
Comparative genomics of the Bifidobacterium breve taxon. BMC Genomics (2014) 1.07
Characterization of two novel alpha-glucosidases from Bifidobacterium breve UCC2003. Appl Environ Microbiol (2008) 0.98
Metabolism of sialic acid by Bifidobacterium breve UCC2003. Appl Environ Microbiol (2014) 0.97
Metabolism of oligosaccharides and starch in lactobacilli: a review. Front Microbiol (2012) 0.97
Development of a luciferase-based reporter system to monitor Bifidobacterium breve UCC2003 persistence in mice. BMC Microbiol (2008) 0.96
Cross-feeding by Bifidobacterium breve UCC2003 during co-cultivation with Bifidobacterium bifidum PRL2010 in a mucin-based medium. BMC Microbiol (2014) 0.95
Amylolytic microorganism from são paulo zoo composting: isolation, identification, and amylase production. Enzyme Res (2011) 0.94
Transcriptional and functional characterization of genetic elements involved in galacto-oligosaccharide utilization by Bifidobacterium breve UCC2003. Microb Biotechnol (2012) 0.93
Molecular dissection of a bifidobacterial replicon. Appl Environ Microbiol (2007) 0.93
Ability of Bifidobacterium breve to grow on different types of milk: exploring the metabolism of milk through genome analysis. Appl Environ Microbiol (2011) 0.91
Genomic characterization and transcriptional studies of the starch-utilizing strain Bifidobacterium adolescentis 22L. Appl Environ Microbiol (2014) 0.91
Ecology of bacteria in the human gastrointestinal tract--identification of keystone and foundation taxa. Microbiome (2015) 0.90
Changing dietary calcium-phosphorus level and cereal source selectively alters abundance of bacteria and metabolites in the upper gastrointestinal tracts of weaned pigs. Appl Environ Microbiol (2013) 0.88
Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut. Bioeng Bugs (2012) 0.86
Genomics of the Genus Bifidobacterium Reveals Species-Specific Adaptation to the Glycan-Rich Gut Environment. Appl Environ Microbiol (2015) 0.85
Starch and starch hydrolysates are favorable carbon sources for bifidobacteria in the human gut. BMC Microbiol (2015) 0.85
Introduction of environmentally degradable parameters to evaluate the biodegradability of biodegradable polymers. PLoS One (2012) 0.84
Ammonium acetate enhances solvent production by Clostridium acetobutylicum EA 2018 using cassava as a fermentation medium. J Ind Microbiol Biotechnol (2009) 0.82
Genome analysis of food grade lactic Acid-producing bacteria: from basics to applications. Curr Genomics (2008) 0.79
Comparative Genomics Revealed Genetic Diversity and Species/Strain-Level Differences in Carbohydrate Metabolism of Three Probiotic Bifidobacterial Species. Int J Genomics (2015) 0.76
Bacterial and Archaeal α-Amylases: Diversity and Amelioration of the Desirable Characteristics for Industrial Applications. Front Microbiol (2016) 0.75
Microscale spatial analysis provides evidence for adhesive monopolization of dietary nutrients by specific intestinal bacteria. PLoS One (2017) 0.75
Genomic analysis of three Bifidobacterium species isolated from the calf gastrointestinal tract. Sci Rep (2016) 0.75
Microbiome and Biocatalytic Bacteria in Monkey Cup (Nepenthes Pitcher) Digestive Fluid. Sci Rep (2016) 0.75
Starch Flocculation by the Sweet Potato Sour Liquid Is Mediated by the Adhesion of Lactic Acid Bacteria to Starch. Front Microbiol (2017) 0.75
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem (1976) 903.81
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Basic local alignment search tool. J Mol Biol (1990) 659.07
A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J (1991) 14.56
Probiotics in man and animals. J Appl Bacteriol (1989) 7.43
Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces. Appl Environ Microbiol (2004) 3.51
Starch utilization by the human large intestinal microflora. J Appl Bacteriol (1986) 2.05
The capacity of nondigestible carbohydrates to stimulate fecal bifidobacteria in healthy humans: a double-blind, randomized, placebo-controlled, parallel-group, dose-response relation study. Am J Clin Nutr (2004) 1.82
Starch-hydrolyzing enzymes from thermophilic archaea and bacteria. Curr Opin Chem Biol (2002) 1.46
Variation in human intestinal microbiota with age. Dig Liver Dis (2002) 1.41
Domain evolution in the alpha-amylase family. J Mol Evol (1997) 1.21
Nucleotide sequence of the alpha-amylase-pullulanase gene from Clostridium thermohydrosulfuricum. J Gen Microbiol (1990) 1.13
Pullulan degrading enzymes of bacterial origin. Crit Rev Microbiol (2004) 1.10
Resistant starch modifies gut microflora and microbial metabolism in human flora-associated rats inoculated with faeces from Italian and UK donors. J Appl Microbiol (1999) 1.08
Fermentation of resistant rice starch produces propionate reducing serum and hepatic cholesterol in rats. J Nutr (2000) 1.07
In vitro utilization of amylopectin and high-amylose maize (Amylomaize) starch granules by human colonic bacteria. Appl Environ Microbiol (1999) 1.06
A synbiotic combination of resistant starch and Bifidobacterium lactis facilitates apoptotic deletion of carcinogen-damaged cells in rat colon. J Nutr (2005) 1.05
Purification and properties of an amylopullulanase, a glucoamylase, and an alpha-glucosidase in the amylolytic enzyme system of Thermoanaerobacterium thermosaccharolyticum. Biosci Biotechnol Biochem (1998) 1.05
Sequencing of the amylopullulanase (apu) gene of Thermoanaerobacter ethanolicus 39E, and identification of the active site by site-directed mutagenesis. J Biol Chem (1993) 1.03
A new thermoactive pullulanase from Desulfurococcus mucosus: cloning, sequencing, purification, and characterization of the recombinant enzyme after expression in Bacillus subtilis. J Bacteriol (2000) 1.02
Purification and characterization of an alkaline amylopullulanase with both alpha-1,4 and alpha-1,6 hydrolytic activity from alkalophilic Bacillus sp. KSM-1378. Biochim Biophys Acta (1995) 0.99
Pullulanase type I from Fervidobacterium pennavorans Ven5: cloning, sequencing, and expression of the gene and biochemical characterization of the recombinant enzyme. Appl Environ Microbiol (1999) 0.98
Adhesion of bifidobacteria to granular starch and its implications in probiotic technologies. Appl Environ Microbiol (2001) 0.98
Note: purification of amylase secreted from Bifidobacterium adolescentis. J Appl Microbiol (1997) 0.96
Alpha-galactosidase of Bifidobacterium adolescentis DSM 20083. Curr Microbiol (1999) 0.94
Cloning, expression and biochemical characterisation of a unique thermostable pullulan-hydrolysing enzyme from the hyperthermophilic archaeon Thermococcus aggregans. FEMS Microbiol Lett (2000) 0.93
Faecal short chain fatty acids in breast-fed and formula-fed babies. Acta Paediatr (1994) 0.93
Fecal numbers of bifidobacteria are higher in pigs fed Bifidobacterium longum with a high amylose cornstarch than with a low amylose cornstarch. J Nutr (1997) 0.92
Substrate specificity and detailed characterization of a bifunctional amylase-pullulanase enzyme from Bacillus circulans F-2 having two different active sites on one polypeptide. Eur J Biochem (1995) 0.90
Gene cloning, nucleotide sequence and biochemical properties of a cytoplasmic cyclomaltodextrinase (neopullulanase) from Alicyclobacillus acidocaldarius, reclassification of a group of enzymes. FEMS Microbiol Lett (2000) 0.90
Separation of functional domains for the alpha-1,4 and alpha-1,6 hydrolytic activities of a Bacillus amylopullulanase by limited proteolysis with papain. Biosci Biotechnol Biochem (1996) 0.90
Development of carbohydrate absorption in the fetus and neonate. Pediatrics (1985) 0.87
Resistant starch fraction prepared from kintoki bean affects gene expression of genes associated with cholesterol metabolism in rats. Exp Biol Med (Maywood) (2004) 0.82
Development of an ideal starch saccharification process using amylolytic enzymes from thermophiles. Biochem Soc Trans (2004) 0.81
Amylase content of mixed saliva in children. Acta Paediatr Scand (1974) 0.79
The amylopullulanase of Bacillus sp. DSM 405. Appl Microbiol Biotechnol (1999) 0.79
Amylolytic enzymes from hyperthermophiles. Methods Enzymol (2001) 0.79
Enzyme-resistant fractions of beans lowered serum cholesterol and increased sterol excretions and hepatic mRNA levels in rats. Lipids (2003) 0.78
Gut microbiota composition correlates with diet and health in the elderly. Nature (2012) 6.94
Composition, variability, and temporal stability of the intestinal microbiota of the elderly. Proc Natl Acad Sci U S A (2010) 5.02
Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiol Mol Biol Rev (2007) 4.13
Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363. J Bacteriol (2007) 3.43
Fatty acids from fish: the anti-inflammatory potential of long-chain omega-3 fatty acids. Nutr Rev (2010) 3.30
Genome-scale analyses of health-promoting bacteria: probiogenomics. Nat Rev Microbiol (2008) 3.25
Diversity of bifidobacteria within the infant gut microbiota. PLoS One (2012) 2.71
Multireplicon genome architecture of Lactobacillus salivarius. Proc Natl Acad Sci U S A (2006) 2.43
Exploring the diversity of the bifidobacterial population in the human intestinal tract. Appl Environ Microbiol (2009) 2.34
Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor. Proc Natl Acad Sci U S A (2011) 2.22
Genome sequence of Lactobacillus helveticus, an organism distinguished by selective gene loss and insertion sequence element expansion. J Bacteriol (2007) 2.15
Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging. Proc Natl Acad Sci U S A (2010) 2.14
Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection. Proc Natl Acad Sci U S A (2012) 2.09
Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp. salivarius UCC118. Microbiology (2002) 1.92
Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek (2002) 1.90
The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria. J Bacteriol (2002) 1.71
High-throughput sequencing reveals the incomplete, short-term recovery of infant gut microbiota following parenteral antibiotic treatment with ampicillin and gentamicin. Antimicrob Agents Chemother (2012) 1.69
The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity. PLoS Genet (2009) 1.64
Human gut microbiota and bifidobacteria: from composition to functionality. Antonie Van Leeuwenhoek (2008) 1.62
Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective. Cell Mol Life Sci (2013) 1.57
Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol. PLoS One (2013) 1.56
Genomics and ecological overview of the genus Bifidobacterium. Int J Food Microbiol (2010) 1.53
Diversity of the genus Lactobacillus revealed by comparative genomics of five species. Microbiology (2006) 1.52
Bacteria as vitamin suppliers to their host: a gut microbiota perspective. Curr Opin Biotechnol (2012) 1.51
Carbohydrate metabolism in Bifidobacteria. Genes Nutr (2011) 1.50
Bacteriophage Tuc2009 encodes a tail-associated cell wall-degrading activity. J Bacteriol (2004) 1.49
Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118. Appl Environ Microbiol (2006) 1.48
Programming infant gut microbiota: influence of dietary and environmental factors. Curr Opin Biotechnol (2010) 1.48
Anatomy of a lactococcal phage tail. J Bacteriol (2006) 1.46
The genus Lactobacillus--a genomic basis for understanding its diversity. FEMS Microbiol Lett (2007) 1.45
Insights into the taxonomy, genetics and physiology of bifidobacteria. Antonie Van Leeuwenhoek (2004) 1.43
Microbiomic analysis of the bifidobacterial population in the human distal gut. ISME J (2009) 1.43
Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria. Trends Microbiol (2012) 1.42
Structural characterization and assembly of the distal tail structure of the temperate lactococcal bacteriophage TP901-1. J Bacteriol (2005) 1.42
Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria. Antonie Van Leeuwenhoek (2006) 1.41
Identification of the lower baseplate protein as the antireceptor of the temperate lactococcal bacteriophages TP901-1 and Tuc2009. J Bacteriol (2006) 1.39
Bifidobacteria and humans: our special friends, from ecological to genomics perspectives. J Sci Food Agric (2013) 1.39
Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003. Appl Environ Microbiol (2008) 1.38
A five-strain probiotic combination reduces pathogen shedding and alleviates disease signs in pigs challenged with Salmonella enterica Serovar Typhimurium. Appl Environ Microbiol (2007) 1.38
Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism. Proc Natl Acad Sci U S A (2012) 1.37
A topological model of the baseplate of lactococcal phage Tuc2009. J Biol Chem (2007) 1.36
Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium-host interactions. Proc Natl Acad Sci U S A (2013) 1.36
High resolution in vivo bioluminescent imaging for the study of bacterial tumour targeting. PLoS One (2012) 1.36
Diversity, ecology and intestinal function of bifidobacteria. Microb Cell Fact (2014) 1.35
Analysis of bifidobacterial evolution using a multilocus approach. Int J Syst Evol Microbiol (2006) 1.34
Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003. Microb Biotechnol (2008) 1.33
Surface microflora of four smear-ripened cheeses. Appl Environ Microbiol (2005) 1.33
Identification and characterization of a fructose phosphotransferase system in Bifidobacterium breve UCC2003. Appl Environ Microbiol (2006) 1.32
Riboflavin production in Lactococcus lactis: potential for in situ production of vitamin-enriched foods. Appl Environ Microbiol (2004) 1.32
Probing direct interactions between CodY and the oppD promoter of Lactococcus lactis. J Bacteriol (2005) 1.29
Sequence and comparative genomic analysis of lactococcal bacteriophages jj50, 712 and P008: evolutionary insights into the 936 phage species. FEMS Microbiol Lett (2006) 1.28
Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei. Appl Environ Microbiol (2006) 1.28
Transcriptional regulation and characterization of a novel beta-fructofuranosidase-encoding gene from Bifidobacterium breve UCC2003. Appl Environ Microbiol (2005) 1.27
From bacterial genome to functionality; case bifidobacteria. Int J Food Microbiol (2007) 1.27
Phage lysin LysK can be truncated to its CHAP domain and retain lytic activity against live antibiotic-resistant staphylococci. Appl Environ Microbiol (2008) 1.26
Bioactive peptides from muscle sources: meat and fish. Nutrients (2011) 1.25
Comparative genomics of lactic acid bacteria reveals a niche-specific gene set. BMC Microbiol (2009) 1.24
Prophage-like elements in bifidobacteria: insights from genomics, transcription, integration, distribution, and phylogenetic analysis. Appl Environ Microbiol (2005) 1.24
Comparative genomics of the genus Bifidobacterium. Microbiology (2010) 1.24
Identification and characterization of phage-resistance genes in temperate lactococcal bacteriophages. Mol Microbiol (2002) 1.24
Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut. PLoS One (2012) 1.23
Composition of the early intestinal microbiota: knowledge, knowledge gaps and the use of high-throughput sequencing to address these gaps. Gut Microbes (2012) 1.23
High-throughput sequencing for detection of subpopulations of bacteria not previously associated with artisanal cheeses. Appl Environ Microbiol (2012) 1.23
Solution and electron microscopy characterization of lactococcal phage baseplates expressed in Escherichia coli. J Struct Biol (2010) 1.22
The riboflavin transporter RibU in Lactococcus lactis: molecular characterization of gene expression and the transport mechanism. J Bacteriol (2006) 1.20
Improving gastric transit, gastrointestinal persistence and therapeutic efficacy of the probiotic strain Bifidobacterium breve UCC2003. Microbiology (2007) 1.20
Molecular and transcriptional analysis of the temperate lactococcal bacteriophage Tuc2009. Virology (2004) 1.20
The Bacillus subtilis transition state regulator AbrB binds to the -35 promoter region of comK. FEMS Microbiol Lett (2003) 1.20
Relative ability of orally administered Lactobacillus murinus to predominate and persist in the porcine gastrointestinal tract. Appl Environ Microbiol (2004) 1.18
The complex microbiota of raw milk. FEMS Microbiol Rev (2013) 1.18
Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: genetic, transcriptional, and phylogenetic analyses. Appl Environ Microbiol (2004) 1.17
Heterologous expression of BetL, a betaine uptake system, enhances the stress tolerance of Lactobacillus salivarius UCC118. Appl Environ Microbiol (2006) 1.17
Metabolic activity of the enteric microbiota influences the fatty acid composition of murine and porcine liver and adipose tissues. Am J Clin Nutr (2009) 1.15
Lactobacillus phylogenomics--towards a reclassification of the genus. Int J Syst Evol Microbiol (2008) 1.14