The roots of future rice harvests.

PubWeight™: 0.82‹?›

🔗 View Article (PMID 26224558)

Published in Rice (N Y) on December 10, 2014

Authors

Nourollah Ahmadi1, Alain Audebert, Malcolm J Bennett, Anthony Bishopp, Antonio Costa de Oliveira, Brigitte Courtois, Abdala Diedhiou, Anne Diévart, Pascal Gantet, Alain Ghesquière, Emmanuel Guiderdoni, Amelia Henry, Yoshiaki Inukai, Leon Kochian, Laurent Laplaze, Mikael Lucas, Doan Trung Luu, Baboucarr Manneh, Xiaorong Mo, Raveendran Muthurajan, Christophe Périn, Adam Price, Sabariappan Robin, Hervé Sentenac, Bassirou Sine, Yusaku Uga, Anne Aliénor Véry, Matthias Wissuwa, Ping Wu, Jian Xu

Author Affiliations

1: CIRAD, UMR AGAP, 34398, Montpellier Cedex 5, France, ahmadi@cirad.fr.

Articles cited by this

Prediction of total genetic value using genome-wide dense marker maps. Genetics (2001) 41.25

ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering. Trends Biotechnol (2013) 11.58

Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res (2011) 11.32

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis. Nucleic Acids Res (2009) 5.90

Genomic selection in plant breeding: from theory to practice. Brief Funct Genomics (2010) 4.87

Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution. Nat Methods (2010) 4.47

Three-dimensional root phenotyping with a novel imaging and software platform. Plant Physiol (2011) 3.50

Imaging and analysis platform for automatic phenotyping and trait ranking of plant root systems. Plant Physiol (2010) 3.30

Cell-specific nitrogen responses mediate developmental plasticity. Proc Natl Acad Sci U S A (2008) 3.17

High-throughput quantification of root growth using a novel image-analysis tool. Plant Physiol (2009) 2.78

The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency. Nature (2012) 2.57

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions. Nat Genet (2013) 2.46

Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping. PLoS Genet (2011) 2.34

The X-factor: visualizing undisturbed root architecture in soils using X-ray computed tomography. J Exp Bot (2010) 2.16

Targeted mutagenesis in rice using CRISPR-Cas system. Cell Res (2013) 2.00

GiA Roots: software for the high throughput analysis of plant root system architecture. BMC Plant Biol (2012) 1.98

Genetic control of root development in rice, the model cereal. Trends Plant Sci (2010) 1.77

RootNav: navigating images of complex root architectures. Plant Physiol (2013) 1.61

The optimal lateral root branching density for maize depends on nitrogen and phosphorus availability. Plant Physiol (2014) 1.58

Genome-wide association mapping of root traits in a japonica rice panel. PLoS One (2013) 1.58

Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1. Plant Physiol (2005) 1.55

High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development. Plant Cell Environ (2012) 1.53

GreenPhylDB v2.0: comparative and functional genomics in plants. Nucleic Acids Res (2010) 1.52

Root anatomical phenes associated with water acquisition from drying soil: targets for crop improvement. J Exp Bot (2014) 1.47

Integration of root phenes for soil resource acquisition. Front Plant Sci (2013) 1.47

3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture. Proc Natl Acad Sci U S A (2013) 1.46

Genetic, physiological, and gene expression analyses reveal that multiple QTL enhance yield of rice mega-variety IR64 under drought. PLoS One (2013) 1.32

Analyzing lateral root development: how to move forward. Plant Cell (2012) 1.31

Control of water uptake by rice ( Oryza sativa L.): role of the outer part of the root. Planta (2003) 1.29

Genome-wide association study using cellular traits identifies a new regulator of root development in Arabidopsis. Nat Genet (2013) 1.27

Water permeability and reflection coefficient of the outer part of young rice roots are differently affected by closure of water channels (aquaporins) or blockage of apoplastic pores. J Exp Bot (2004) 1.24

Plant roots use a patterning mechanism to position lateral root branches toward available water. Proc Natl Acad Sci U S A (2014) 1.19

Root attributes affecting water uptake of rice (Oryza sativa) under drought. J Exp Bot (2012) 1.16

Improved resolution in the position of drought-related QTLs in a single mapping population of rice by meta-analysis. BMC Genomics (2009) 1.15

Post-embryonic root organogenesis in cereals: branching out from model plants. Trends Plant Sci (2013) 1.13

Involvement of auxin pathways in modulating root architecture during beneficial plant-microorganism interactions. Plant Cell Environ (2012) 1.10

Glomus intraradices induces changes in root system architecture of rice independently of common symbiosis signaling. New Phytol (2009) 1.08

Hieranoid: hierarchical orthology inference. J Mol Biol (2013) 1.05

Fine-mapping of qRL6.1, a major QTL for root length of rice seedlings grown under a wide range of NH4(+) concentrations in hydroponic conditions. Theor Appl Genet (2010) 1.03

QTLs associated with root traits increase yield in upland rice when transferred through marker-assisted selection. Theor Appl Genet (2012) 1.01

Sowing the seeds for the ideal crop. Science (2010) 0.94

Combining linkage and association mapping identifies RECEPTOR-LIKE PROTEIN KINASE1 as an essential Arabidopsis shoot regeneration gene. Proc Natl Acad Sci U S A (2014) 0.92

Root systems biology: integrative modeling across scales, from gene regulatory networks to the rhizosphere. Plant Physiol (2013) 0.85

Microbial enhancement of crop resource use efficiency. Curr Opin Biotechnol (2011) 0.83

A rice mutant sensitive to Al toxicity is defective in the specification of root outer cell layers. Plant Cell Physiol (2009) 0.80

International Consortium of Rice Mutagenesis: resources and beyond. Rice (N Y) (2013) 0.79

Articles by these authors

De-ubiquitination and ubiquitin ligase domains of A20 downregulate NF-kappaB signalling. Nature (2004) 12.41

Adherence to antiretroviral therapy in sub-Saharan Africa and North America: a meta-analysis. JAMA (2006) 11.71

Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science (2005) 9.08

Adherence to HAART: a systematic review of developed and developing nation patient-reported barriers and facilitators. PLoS Med (2006) 8.57

The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots. Nature (2005) 8.20

Human fetal hemoglobin expression is regulated by the developmental stage-specific repressor BCL11A. Science (2008) 6.66

Calcineurin/NFAT coupling participates in pathological, but not physiological, cardiac hypertrophy. Circ Res (2003) 5.30

B cells promote insulin resistance through modulation of T cells and production of pathogenic IgG antibodies. Nat Med (2011) 5.16

Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc Natl Acad Sci U S A (2006) 5.13

Polar PIN localization directs auxin flow in plants. Science (2006) 4.81

Genetic manipulation of periostin expression reveals a role in cardiac hypertrophy and ventricular remodeling. Circ Res (2007) 4.53

Auxin transport is sufficient to generate a maximum and gradient guiding root growth. Nature (2007) 4.50

Barriers to participation in clinical trials of cancer: a meta-analysis and systematic review of patient-reported factors. Lancet Oncol (2006) 4.32

A memory retrieval-extinction procedure to prevent drug craving and relapse. Science (2012) 4.04

The auxin influx carrier LAX3 promotes lateral root emergence. Nat Cell Biol (2008) 3.69

Root gravitropism requires lateral root cap and epidermal cells for transport and response to a mobile auxin signal. Nat Cell Biol (2005) 3.61

Dissecting Arabidopsis lateral root development. Trends Plant Sci (2003) 3.52

Developmental and species-divergent globin switching are driven by BCL11A. Nature (2009) 3.49

Root system architecture: opportunities and constraints for genetic improvement of crops. Trends Plant Sci (2007) 3.48

The genome of Theobroma cacao. Nat Genet (2010) 3.47

Rice plant development: from zygote to spikelet. Plant Cell Physiol (2005) 3.45

Association between change in high density lipoprotein cholesterol and cardiovascular disease morbidity and mortality: systematic review and meta-regression analysis. BMJ (2009) 3.39

Primary prevention of cardiovascular mortality and events with statin treatments: a network meta-analysis involving more than 65,000 patients. J Am Coll Cardiol (2008) 3.33

Auxin-dependent regulation of lateral root positioning in the basal meristem of Arabidopsis. Development (2007) 3.31

Validity of composite end points in clinical trials. BMJ (2005) 3.26

Cytokinin signaling and its inhibitor AHP6 regulate cell fate during vascular development. Science (2006) 3.18

Ethylene upregulates auxin biosynthesis in Arabidopsis seedlings to enhance inhibition of root cell elongation. Plant Cell (2007) 3.14

Transfusion-related acute lung injury: incidence and risk factors. Blood (2011) 3.12

Arabidopsis lateral root development: an emerging story. Trends Plant Sci (2009) 3.08

The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression. Proc Natl Acad Sci U S A (2006) 3.07

Problems with use of composite end points in cardiovascular trials: systematic review of randomised controlled trials. BMJ (2007) 3.06

14-3-3 transits to the nucleus and participates in dynamic nucleocytoplasmic transport. J Cell Biol (2002) 2.97

Interaction of Polycomb-group proteins controlling flowering in Arabidopsis. Development (2004) 2.87

A novel sensor to map auxin response and distribution at high spatio-temporal resolution. Nature (2012) 2.86

The transforming growth factor-beta superfamily member growth-differentiation factor-15 protects the heart from ischemia/reperfusion injury. Circ Res (2006) 2.85

Arabidopsis sterol endocytosis involves actin-mediated trafficking via ARA6-positive early endosomes. Curr Biol (2003) 2.84

Plant neurobiology: no brain, no gain? Trends Plant Sci (2007) 2.83

A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity. Curr Biol (2010) 2.81

High-throughput quantification of root growth using a novel image-analysis tool. Plant Physiol (2009) 2.78

Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants. Plant Physiol (2003) 2.73

Cardiovascular events associated with smoking cessation pharmacotherapies: a network meta-analysis. Circulation (2013) 2.73

An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level. Science (2013) 2.71

Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx). Science (2009) 2.68

Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27. EMBO J (2006) 2.68

The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency. Nature (2012) 2.57

Structure-function analysis of the presumptive Arabidopsis auxin permease AUX1. Plant Cell (2004) 2.55

Genetic and genomic approaches to develop rice germplasm for problem soils. Plant Mol Biol (2007) 2.53

Colocalization of fluorescent markers in confocal microscope images of plant cells. Nat Protoc (2008) 2.53

Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana. Science (2009) 2.52

Psychopathology among New York city public school children 6 months after September 11. Arch Gen Psychiatry (2005) 2.48

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions. Nat Genet (2013) 2.46

Statin therapy in stroke prevention: a meta-analysis involving 121,000 patients. Am J Med (2008) 2.44

Retracted Generation of cell polarity in plants links endocytosis, auxin distribution and cell fate decisions. Nature (2008) 2.42

Functional analysis of AtHKT1 in Arabidopsis shows that Na(+) recirculation by the phloem is crucial for salt tolerance. EMBO J (2003) 2.42

Molecular mechanisms and regulation of K+ transport in higher plants. Annu Rev Plant Biol (2003) 2.40

The quality of randomized trial reporting in leading medical journals since the revised CONSORT statement. Contemp Clin Trials (2005) 2.40

Two pathways of synaptic vesicle retrieval revealed by single-vesicle imaging. Neuron (2009) 2.38

Root-specific CLE19 overexpression and the sol1/2 suppressors implicate a CLV-like pathway in the control of Arabidopsis root meristem maintenance. Curr Biol (2003) 2.38

The 14-amino acid CLV3, CLE19, and CLE40 peptides trigger consumption of the root meristem in Arabidopsis through a CLAVATA2-dependent pathway. Plant Cell (2005) 2.36

AMPKalpha2 deletion causes aberrant expression and activation of NAD(P)H oxidase and consequent endothelial dysfunction in vivo: role of 26S proteasomes. Circ Res (2010) 2.35

Deleterious effects of amyloid beta oligomers acting as an extracellular scaffold for mGluR5. Neuron (2010) 2.34

TL1A-DR3 interaction regulates Th17 cell function and Th17-mediated autoimmune disease. J Exp Med (2008) 2.33

A functional element necessary for fetal hemoglobin silencing. N Engl J Med (2011) 2.25

ARL1, a LOB-domain protein required for adventitious root formation in rice. Plant J (2005) 2.24

Low-dose aspirin and cancer mortality: a meta-analysis of randomized trials. Am J Med (2012) 2.23

Genetic deletion of myostatin from the heart prevents skeletal muscle atrophy in heart failure. Circulation (2010) 2.23

Activation of protein phosphatase 2A by palmitate inhibits AMP-activated protein kinase. J Biol Chem (2007) 2.20

Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem. Plant J (2002) 2.14

Epigenetic characterization of hematopoietic stem cell differentiation using miniChIP and bisulfite sequencing analysis. Proc Natl Acad Sci U S A (2007) 2.13

Cardiomyocyte GATA4 functions as a stress-responsive regulator of angiogenesis in the murine heart. J Clin Invest (2007) 2.12

Meta-analysis of methylcobalamin alone and in combination with lipoic acid in patients with diabetic peripheral neuropathy. Diabetes Res Clin Pract (2013) 2.12

Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol (2009) 2.11

OsPHR2 is involved in phosphate-starvation signaling and excessive phosphate accumulation in shoots of plants. Plant Physiol (2008) 2.06

MiR-21 overexpression in human primary squamous cell lung carcinoma is associated with poor patient prognosis. J Cancer Res Clin Oncol (2010) 2.05

Levels of prenatal mercury exposure and their relationships to neonatal anthropometry in Wujiang City, China. Environ Pollut (2013) 2.01

Design, analysis, and presentation of crossover trials. Trials (2009) 2.01

Rice mutant resources for gene discovery. Plant Mol Biol (2004) 1.99

Golden-angle radial sparse parallel MRI: combination of compressed sensing, parallel imaging, and golden-angle radial sampling for fast and flexible dynamic volumetric MRI. Magn Reson Med (2013) 1.99

Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation. Plant J (2008) 1.97

Lateral root development in Arabidopsis: fifty shades of auxin. Trends Plant Sci (2013) 1.97

Auxin transport through non-hair cells sustains root-hair development. Nat Cell Biol (2008) 1.94

High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics. Plant J (2004) 1.93

Pollen tube development and competitive ability are impaired by disruption of a Shaker K(+) channel in Arabidopsis. Genes Dev (2002) 1.93

The morphogenesis of feathers. Nature (2002) 1.91

Posttreatment with aspirin-triggered lipoxin A4 analog attenuates lipopolysaccharide-induced acute lung injury in mice: the role of heme oxygenase-1. Anesth Analg (2007) 1.91

An analysis of general medical and specialist journals that endorse CONSORT found that reporting was not enforced consistently. J Clin Epidemiol (2005) 1.89

Antibody-based targeting of FGFR3 in bladder carcinoma and t(4;14)-positive multiple myeloma in mice. J Clin Invest (2009) 1.89

Root growth in Arabidopsis requires gibberellin/DELLA signalling in the endodermis. Nat Cell Biol (2008) 1.89

Systems analysis of auxin transport in the Arabidopsis root apex. Plant Cell (2014) 1.87

Where do gibberellin biosynthesis and gibberellin signaling occur in rice plants? Plant J (2003) 1.87

AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during Arabidopsis development. Plant Cell (2012) 1.86

Re-employment of developmental transcription factors in adult heart disease. Semin Cell Dev Biol (2006) 1.82

The Arabidopsis outward K+ channel GORK is involved in regulation of stomatal movements and plant transpiration. Proc Natl Acad Sci U S A (2003) 1.82