Published in Biotechniques on March 01, 2011
Whole-transcriptome RNAseq analysis from minute amount of total RNA. Nucleic Acids Res (2011) 1.97
Finding the active genes in deep RNA-seq gene expression studies. BMC Genomics (2013) 1.35
A cost-effective RNA sequencing protocol for large-scale gene expression studies. Sci Rep (2015) 0.92
SERE: single-parameter quality control and sample comparison for RNA-Seq. BMC Genomics (2012) 0.92
Functionally diverse dendritic mRNAs rapidly associate with ribosomes following a novel experience. Nat Commun (2014) 0.87
Defining CD4 T cell memory by the epigenetic landscape of CpG DNA methylation. J Immunol (2015) 0.87
Integrative RNA-seq and microarray data analysis reveals GC content and gene length biases in the psoriasis transcriptome. Physiol Genomics (2014) 0.86
Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol. PLoS One (2013) 0.82
Oxidative damage to rhesus macaque spermatozoa results in mitotic arrest and transcript abundance changes in early embryos. Biol Reprod (2013) 0.81
RNA-Seq and expression microarray highlight different aspects of the fetal amniotic fluid transcriptome. Prenat Diagn (2014) 0.80
RNA-Seq for Plant Pathogenic Bacteria. Genes (Basel) (2011) 0.78
Effects of long-term endocrine disrupting compound exposure on Macaca mulatta embryonic stem cells. Reprod Toxicol (2016) 0.75
Promoter H3K4 methylation dynamically reinforces activation-induced pathways in human CD4 T cells. Genes Immun (2016) 0.75
Laser capture microdissection in Ectocarpus siliculosus: the pathway to cell-specific transcriptomics in brown algae. Front Plant Sci (2015) 0.75
CAT7 and cat7l Long Non-coding RNAs Tune Polycomb Repressive Complex 1 Function during Human and Zebrafish Development. J Biol Chem (2016) 0.75
Orthogonal Comparison of Molecular Signatures of Kidney Transplants With Subclinical and Clinical Acute Rejection: Equivalent Performance Is Agnostic to Both Technology and Platform. Am J Transplant (2017) 0.75
A census of human soluble protein complexes. Cell (2012) 3.90
Kinetic analysis of a complete poxvirus transcriptome reveals an immediate-early class of genes. Proc Natl Acad Sci U S A (2008) 2.43
Kidney transplant rejection and tissue injury by gene profiling of biopsies and peripheral blood lymphocytes. Am J Transplant (2004) 2.35
De novo kidney transplantation without use of calcineurin inhibitors preserves renal structure and function at two years. Am J Transplant (2004) 2.17
The long third complementarity-determining region of the heavy chain is important in the activity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5. J Virol (2004) 2.02
Strategies for aggregating gene expression data: the collapseRows R function. BMC Bioinformatics (2011) 1.96
ATP-sensitive potassium channels mediate survival during infection in mammals and insects. Nat Genet (2007) 1.83
Kidney preservation by bone marrow cell transplantation in hereditary nephropathy. Kidney Int (2011) 1.72
Systemic immunoregulatory and proteogenomic effects of tacrolimus to sirolimus conversion in liver transplant recipients. Hepatology (2012) 1.56
A map of human protein interactions derived from co-expression of human mRNAs and their orthologs. Mol Syst Biol (2008) 1.53
Major biocontrol of plant tumors targets tRNA synthetase. Science (2005) 1.51
Finding the active genes in deep RNA-seq gene expression studies. BMC Genomics (2013) 1.35
Successful treatment of the murine model of cystinosis using bone marrow cell transplantation. Blood (2009) 1.28
Quantitative bias in Illumina TruSeq and a novel post amplification barcoding strategy for multiplexed DNA and small RNA deep sequencing. PLoS One (2011) 1.24
Identification of receptors for pig endogenous retrovirus. Proc Natl Acad Sci U S A (2003) 1.23
An RNA targeted to the HIV-1 LTR promoter modulates indiscriminate off-target gene activation. Nucleic Acids Res (2007) 1.20
MicroRNA regulation of molecular networks mapped by global microRNA, mRNA, and protein expression in activated T lymphocytes. J Immunol (2011) 1.18
Peracetylated 4-fluoro-glucosamine reduces the content and repertoire of N- and O-glycans without direct incorporation. J Biol Chem (2011) 1.17
Selectin ligand sialyl-Lewis x antigen drives metastasis of hormone-dependent breast cancers. Cancer Res (2011) 1.17
Localization of Smc5/6 to centromeres and telomeres requires heterochromatin and SUMO, respectively. EMBO J (2008) 1.16
Systematic profiling of cellular phenotypes with spotted cell microarrays reveals mating-pheromone response genes. Genome Biol (2006) 1.16
Noncoding transcription within the Igh distal V(H) region at PAIR elements affects the 3D structure of the Igh locus in pro-B cells. Proc Natl Acad Sci U S A (2012) 1.14
Molecular mechanisms of chronic kidney transplant rejection via large-scale proteogenomic analysis of tissue biopsies. J Am Soc Nephrol (2010) 1.13
Rad3 decorates critical chromosomal domains with gammaH2A to protect genome integrity during S-Phase in fission yeast. PLoS Genet (2010) 1.11
Genome-wide identification of Bcl11b gene targets reveals role in brain-derived neurotrophic factor signaling. PLoS One (2011) 1.11
The role of angiopoietins in the development of endothelial cells from cord blood CD34+ progenitors. Blood (2004) 1.09
Reciprocal patterns of methylation of H3K36 and H3K27 on proximal vs. distal IgVH genes are modulated by IL-7 and Pax5. Proc Natl Acad Sci U S A (2008) 1.08
Functional role of gangliotetraosylceramide in epithelial-to-mesenchymal transition process induced by hypoxia and by TGF-{beta}. FASEB J (2010) 1.05
Regulated and aberrant glycosylation modulate cardiac electrical signaling. Proc Natl Acad Sci U S A (2009) 1.05
Glycogene expression in conjunctiva of patients with dry eye: downregulation of Notch signaling. Invest Ophthalmol Vis Sci (2008) 1.04
Deconvoluting post-transplant immunity: cell subset-specific mapping reveals pathways for activation and expansion of memory T, monocytes and B cells. PLoS One (2010) 1.03
Biomarkers for early and late stage chronic allograft nephropathy by proteogenomic profiling of peripheral blood. PLoS One (2009) 1.03
PhenoChipping of psychotic disorders: a novel approach for deconstructing and quantitating psychiatric phenotypes. Am J Med Genet B Neuropsychiatr Genet (2006) 1.02
Application of microdroplet PCR for large-scale targeted bisulfite sequencing. Genome Res (2011) 1.01
The infectivity and host range of the ecotropic porcine endogenous retrovirus, PERV-C, is modulated by residues in the C-terminal region of its surface envelope protein. Virology (2005) 0.98
Porcine endogenous retrovirus infects but does not replicate in nonhuman primate primary cells and cell lines. J Virol (2002) 0.98
Genome-wide analysis of immune activation in human T and B cells reveals distinct classes of alternatively spliced genes. PLoS One (2009) 0.97
Ectopic B-cell clusters that infiltrate transplanted human kidneys are clonal. Proc Natl Acad Sci U S A (2011) 0.96
Why are some amyloidoses systemic? Does hepatic "chaperoning at a distance" prevent cardiac deposition in a transgenic model of human senile systemic (transthyretin) amyloidosis? FASEB J (2012) 0.96
Dendritic epidermal T-cell activation. Crit Rev Immunol (2005) 0.96
Systematic definition of protein constituents along the major polarization axis reveals an adaptive reuse of the polarization machinery in pheromone-treated budding yeast. J Proteome Res (2009) 0.96
The class I HLA repertoire of pancreatic islets comprises the nonclassical class Ib antigen HLA-G. Diabetes (2006) 0.96
Hematopoietic stem cell gene therapy for the multisystemic lysosomal storage disorder cystinosis. Mol Ther (2012) 0.96
Genomic biomarkers correlate with HLA-identical renal transplant tolerance. J Am Soc Nephrol (2013) 0.94
An association of candidate gene haplotypes and bleeding severity in von Willebrand disease (VWD) type 1 pedigrees. Blood (2004) 0.93
Pseudotyping of porcine endogenous retrovirus by xenotropic murine leukemia virus in a pig islet xenotransplantation model. Am J Transplant (2005) 0.93
Type 2 diabetes in mice induces hepatic overexpression of sulfatase 2, a novel factor that suppresses uptake of remnant lipoproteins. Hepatology (2010) 0.92
Applying genomics to organ transplantation medicine in both discovery and validation of biomarkers. Int Immunopharmacol (2007) 0.92
Antibodies reactive to non-HLA antigens in transplant glomerulopathy. J Am Soc Nephrol (2011) 0.91
SIGLEC12, a human-specific segregating (pseudo)gene, encodes a signaling molecule expressed in prostate carcinomas. J Biol Chem (2011) 0.91
A distinctive set of genes is upregulated during the inflammation-carcinoma sequence in mouse stomach infected by Helicobacter felis. J Histochem Cytochem (2006) 0.90
Activation of counter-regulatory mechanisms in a rat renal acute rejection model. BMC Genomics (2008) 0.89
Glycosyltransferase and sulfotransferase gene expression profiles in human monocytes, dendritic cells and macrophages. Glycoconj J (2009) 0.88
Identification and molecular analysis of glycosaminoglycans in cutaneous lupus erythematosus and dermatomyositis. J Histochem Cytochem (2011) 0.88
Feline immunodeficiency virus OrfA alters gene expression of splicing factors and proteasome-ubiquitination proteins. Virology (2007) 0.88
MicroRNA regulation of T-lymphocyte immunity: modulation of molecular networks responsible for T-cell activation, differentiation, and development. Crit Rev Immunol (2013) 0.87
Plasma protein biomarkers enhance the clinical prediction of kidney injury recovery in patients undergoing liver transplantation. Hepatology (2014) 0.87
Isolation and angiogenesis by endothelial progenitors in the fetal liver. Stem Cells (2005) 0.86
Identification of residues outside of the receptor binding domain that influence the infectivity and tropism of porcine endogenous retrovirus. J Virol (2008) 0.86
Laparoscopic donor nephrectomy gene expression profiling reveals upregulation of stress and ischemia associated genes compared to control kidneys. Transplantation (2005) 0.86
The costimulatory immunogen LPS induces the B-Cell clones that infiltrate transplanted human kidneys. Proc Natl Acad Sci U S A (2012) 0.85
Syndecan-Fc hybrid molecule as a potent in vitro microbicidal anti-HIV-1 agent. Antimicrob Agents Chemother (2010) 0.85
Molecular characterization of a novel gammaretrovirus in killer whales (Orcinus orca). J Virol (2009) 0.84
Whole genome transcript profiling from fingerstick blood samples: a comparison and feasibility study. BMC Genomics (2009) 0.84
Comparison of the convergent receptor utilization of a retargeted feline leukemia virus envelope with a naturally-occurring porcine endogenous retrovirus A. Virology (2012) 0.84
Lack of cross-species transmission of porcine endogenous retrovirus (PERV) to transplant recipients and abattoir workers in contact with pigs. Transplantation (2007) 0.83
Intragraft TNF receptor signaling contributes to activation of innate and adaptive immunity in a renal allograft model. Transplantation (2009) 0.83
Striking decrease in the total precursor B-cell compartment during early childhood as evidenced by flow cytometry and gene expression changes. Pediatr Hematol Oncol (2010) 0.82
Functional proteogenomics--embracing complexity. Semin Immunol (2011) 0.82
Expression of glycogenes in differentiating human NT2N neurons. Downregulation of fucosyltransferase 9 leads to decreased Lewis(x) levels and impaired neurite outgrowth. Biochim Biophys Acta (2012) 0.82
Cyclosporin-A induced toxicity in rat renal collecting duct cells: interference with enhanced hypertonicity induced apoptosis. Cell Physiol Biochem (2011) 0.81
Mindscape: a convergent perspective on life, mind, consciousness and happiness. J Affect Disord (2010) 0.80
Functional hierarchy of two L domains in porcine endogenous retrovirus (PERV) that influence release and infectivity. Virology (2008) 0.79
Identification of two distinct structural regions in a human porcine endogenous retrovirus receptor, HuPAR2, contributing to function for viral entry. Retrovirology (2009) 0.79
Tissue-engineered fetal dermal matrices. In Vitro Cell Dev Biol Anim (2012) 0.79
RNA purification and expression analysis using microarrays and RNA deep sequencing. Methods Mol Biol (2013) 0.79
Hierarchy of simulation models in predicting structure and energetics of the Src SH2 domain binding to tyrosyl phosphopeptides. J Med Chem (2002) 0.78
HLA identical non-chimeric and HLA disparate chimeric renal transplant tolerance. Clin Transpl (2013) 0.78
Lentiviral gene delivery of vMIP-II to transplanted endothelial cells and endothelial progenitors is proangiogenic in vivo. Mol Ther (2007) 0.77
Genomic meta-analysis of growth factor and integrin pathways in chronic kidney transplant injury. BMC Genomics (2013) 0.77
Triiodothyronine (T3) inhibits hyaluronate synthesis in a human dermal equivalent by downregulation of HAS2. In Vitro Cell Dev Biol Anim (2013) 0.76
New opportunities for organ transplantation research: epigenetics is likely to be an important determinant of the host immune response. Epigenomics (2013) 0.76
Bone marrow transfusions in cadaver renal allografts: pilot trials with concurrent controls. Clin Transplant (2002) 0.76
VHL-dependent regulation of a β-dystroglycan glycoform and glycogene expression in renal cancer. Int J Oncol (2013) 0.76
High-throughput immunofluorescence microscopy using yeast spheroplast cell-based microarrays. Methods Mol Biol (2011) 0.75
Platelet receptor structures and polymorphisms. Methods Mol Biol (2004) 0.75
All-trans retinoic acid is an effective inhibitor of hyaluronate synthesis in a human dermal equivalent. Arch Dermatol Res (2014) 0.75
Biomarker Guidelines for High-Dimensional Genomic Studies in Transplantation: Adding Method to the Madness. Transplantation (2017) 0.75
Correction: Suppression of transcriptional drift extends C. elegans lifespan by postponing the onset of mortality. Elife (2016) 0.75
Multicenter clinical sample collection for microarray analysis. Methods Mol Biol (2010) 0.75
Elevated kallikrein activity in plasma from stable liver transplant recipients. Int Immunopharmacol (2002) 0.75