Published in PLoS One on October 28, 2011
Identification of extracellular miRNA in human cerebrospinal fluid by next-generation sequencing. RNA (2013) 1.56
Biases in small RNA deep sequencing data. Nucleic Acids Res (2013) 1.34
Extent, causes, and consequences of small RNA expression variation in human adipose tissue. PLoS Genet (2012) 1.28
ISEV position paper: extracellular vesicle RNA analysis and bioinformatics. J Extracell Vesicles (2013) 1.23
Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annua. BMC Plant Biol (2013) 1.03
Small RNA expression profiling by high-throughput sequencing: implications of enzymatic manipulation. J Nucleic Acids (2012) 0.94
Differences in microRNA detection levels are technology and sequence dependent. RNA (2013) 0.93
Genotyping 1000 yeast strains by next-generation sequencing. BMC Genomics (2013) 0.90
Genome-wide identification of transcript start and end sites by transcript isoform sequencing. Nat Protoc (2014) 0.88
Comparison of Analysis Tools for miRNA High Throughput Sequencing Using Nerve Crush as a Model. Front Genet (2013) 0.85
Comprehensive evaluation and optimization of amplicon library preparation methods for high-throughput antibody sequencing. PLoS One (2014) 0.85
Elimination of ligation dependent artifacts in T4 RNA ligase to achieve high efficiency and low bias microRNA capture. PLoS One (2014) 0.84
Addressing Bias in Small RNA Library Preparation for Sequencing: A New Protocol Recovers MicroRNAs that Evade Capture by Current Methods. Front Genet (2015) 0.83
An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments. Nucleic Acids Res (2014) 0.81
Where does transcription start? 5'-RACE adapted to next-generation sequencing. Nucleic Acids Res (2015) 0.81
Targeted genomic enrichment and sequencing of CyHV-3 from carp tissues confirms low nucleotide diversity and mixed genotype infections. PeerJ (2016) 0.78
Profiling the circulating miRNAs in mice exposed to gram-positive and gram-negative bacteria by Illumina small RNA deep sequencing. J Biomed Sci (2015) 0.78
Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow. Nucleic Acids Res (2016) 0.77
Four methods of preparing mRNA 5' end libraries using the Illumina sequencing platform. PLoS One (2014) 0.76
All-Food-Seq (AFS): a quantifiable screen for species in biological samples by deep DNA sequencing. BMC Genomics (2014) 0.76
A novel method to identify and isolate proliferative inflammatory atrophy (PIA) clusters and to extract high-quality PIA RNA. Int J Clin Exp Pathol (2015) 0.75
Efficient synthesis of stably adenylated DNA and RNA adapters for microRNA capture using T4 RNA ligase 1. Sci Rep (2015) 0.75
Feasibility of whole RNA sequencing from single-cell mRNA amplification. Genet Res Int (2013) 0.75
Determination of absolute expression profiles using multiplexed miRNA analysis. PLoS One (2017) 0.75
miRBase: tools for microRNA genomics. Nucleic Acids Res (2007) 38.61
Identification of genetic variants using bar-coded multiplexed sequencing. Nat Methods (2008) 7.50
A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing. Nucleic Acids Res (2007) 5.33
Limitations and possibilities of small RNA digital gene expression profiling. Nat Methods (2009) 4.34
The effect of acceptor oligoribonucleotide sequence on the T4 RNA ligase reaction. Eur J Biochem (1982) 3.51
Normalization strategies for microRNA profiling experiments: a 'normal' way to a hidden layer of complexity? Biotechnol Lett (2010) 1.84
Efficient microRNA capture and bar-coding via enzymatic oligonucleotide adenylation. Nat Methods (2008) 1.77
New methods for next generation sequencing based microRNA expression profiling. BMC Genomics (2010) 1.38
Technical variables in high-throughput miRNA expression profiling: much work remains to be done. Biochim Biophys Acta (2008) 1.36
High-throughput detection of induced mutations and natural variation using KeyPoint technology. PLoS One (2009) 1.35
Sequencing bias: comparison of different protocols of microRNA library construction. BMC Biotechnol (2010) 1.30
A streamlined protocol for emulsion polymerase chain reaction and subsequent purification. Anal Biochem (2010) 1.15
Effect of PCR extension temperature on high-throughput sequencing. Mol Biochem Parasitol (2010) 1.01
Kinetic analysis of a complete poxvirus transcriptome reveals an immediate-early class of genes. Proc Natl Acad Sci U S A (2008) 2.43
Kidney transplant rejection and tissue injury by gene profiling of biopsies and peripheral blood lymphocytes. Am J Transplant (2004) 2.35
De novo kidney transplantation without use of calcineurin inhibitors preserves renal structure and function at two years. Am J Transplant (2004) 2.17
Strategies for aggregating gene expression data: the collapseRows R function. BMC Bioinformatics (2011) 1.96
Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. J Bacteriol (2006) 1.85
ATP-sensitive potassium channels mediate survival during infection in mammals and insects. Nat Genet (2007) 1.83
The long noncoding RNA THRIL regulates TNFα expression through its interaction with hnRNPL. Proc Natl Acad Sci U S A (2013) 1.78
Complete nucleotide sequence of CTX-M-15-plasmids from clinical Escherichia coli isolates: insertional events of transposons and insertion sequences. PLoS One (2010) 1.73
Kidney preservation by bone marrow cell transplantation in hereditary nephropathy. Kidney Int (2011) 1.72
Partitioning the heritability of Tourette syndrome and obsessive compulsive disorder reveals differences in genetic architecture. PLoS Genet (2013) 1.68
Optimization of an unnatural base pair toward natural-like replication. J Am Chem Soc (2009) 1.66
Efficient and sequence-independent replication of DNA containing a third base pair establishes a functional six-letter genetic alphabet. Proc Natl Acad Sci U S A (2012) 1.57
Systemic immunoregulatory and proteogenomic effects of tacrolimus to sirolimus conversion in liver transplant recipients. Hepatology (2012) 1.56
A focused microarray approach to functional glycomics: transcriptional regulation of the glycome. Glycobiology (2005) 1.49
Selective deficits in the expression of striatal-enriched mRNAs in Huntington's disease. J Neurochem (2006) 1.46
Molecular profiles of schizophrenia in the CNS at different stages of illness. Brain Res (2008) 1.46
Tracking the progression of the human inner cell mass during embryonic stem cell derivation. Nat Biotechnol (2012) 1.45
Automatic detection of spermatozoa for laser capture microdissection. Int J Legal Med (2008) 1.39
Prenylated chalcone xanthohumol associates with histones in breast cancer cells--a novel target identified by a monoclonal antibody. Mol Nutr Food Res (2012) 1.38
Development and evaluation of different normalization strategies for gene expression studies in Candida albicans biofilms by real-time PCR. BMC Mol Biol (2006) 1.37
PCR with an expanded genetic alphabet. J Am Chem Soc (2009) 1.35
Finding the active genes in deep RNA-seq gene expression studies. BMC Genomics (2013) 1.35
Dendritic cell maturation results in pronounced changes in glycan expression affecting recognition by siglecs and galectins. J Immunol (2007) 1.34
Activation of murine CD4+ and CD8+ T lymphocytes leads to dramatic remodeling of N-linked glycans. J Immunol (2006) 1.34
Molecular diagnostics for congenital hearing loss including 15 deafness genes using a next generation sequencing platform. BMC Med Genomics (2012) 1.32
Detection of differentially expressed glycogenes in trabecular meshwork of eyes with primary open-angle glaucoma. Invest Ophthalmol Vis Sci (2006) 1.30
Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation. BMC Genomics (2011) 1.29
Successful treatment of the murine model of cystinosis using bone marrow cell transplantation. Blood (2009) 1.28
Laser capture microdissection in forensic research: a review. Int J Legal Med (2010) 1.26
KlenTaq polymerase replicates unnatural base pairs by inducing a Watson-Crick geometry. Nat Chem Biol (2012) 1.24
Identification of receptors for pig endogenous retrovirus. Proc Natl Acad Sci U S A (2003) 1.23
Illumina mate-paired DNA sequencing-library preparation using Cre-Lox recombination. Nucleic Acids Res (2011) 1.22
An RNA targeted to the HIV-1 LTR promoter modulates indiscriminate off-target gene activation. Nucleic Acids Res (2007) 1.20
Site-specific labeling of DNA and RNA using an efficiently replicated and transcribed class of unnatural base pairs. J Am Chem Soc (2011) 1.19
MicroRNA regulation of molecular networks mapped by global microRNA, mRNA, and protein expression in activated T lymphocytes. J Immunol (2011) 1.18
Peracetylated 4-fluoro-glucosamine reduces the content and repertoire of N- and O-glycans without direct incorporation. J Biol Chem (2011) 1.17
iTRAQ as a method for optimization: enhancing peptide recovery after gel fractionation. Proteomics (2014) 1.17
A plant-derived ligand favoring monomeric glucocorticoid receptor conformation with impaired transactivation potential attenuates collagen-induced arthritis. J Immunol (2008) 1.17
Selectin ligand sialyl-Lewis x antigen drives metastasis of hormone-dependent breast cancers. Cancer Res (2011) 1.17
Localization of Smc5/6 to centromeres and telomeres requires heterochromatin and SUMO, respectively. EMBO J (2008) 1.16
Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics. PLoS One (2011) 1.15
Progranulin expression correlates with dense-core amyloid plaque burden in Alzheimer disease mouse models. J Pathol (2009) 1.15
Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest. PLoS One (2013) 1.15
Noncoding transcription within the Igh distal V(H) region at PAIR elements affects the 3D structure of the Igh locus in pro-B cells. Proc Natl Acad Sci U S A (2012) 1.14
Molecular mechanisms of chronic kidney transplant rejection via large-scale proteogenomic analysis of tissue biopsies. J Am Soc Nephrol (2010) 1.13
Diagnostic value of anti-human citrullinated fibrinogen ELISA and comparison with four other anti-citrullinated protein assays. Arthritis Res Ther (2006) 1.12
Rad3 decorates critical chromosomal domains with gammaH2A to protect genome integrity during S-Phase in fission yeast. PLoS Genet (2010) 1.11
Latent sensitivity to Fas-mediated apoptosis after CD40 ligation may explain activity of CD154 gene therapy in chronic lymphocytic leukemia. Proc Natl Acad Sci U S A (2002) 1.11
Genome-wide identification of Bcl11b gene targets reveals role in brain-derived neurotrophic factor signaling. PLoS One (2011) 1.11
Method for improved Illumina sequencing library preparation using NuGEN Ovation RNA-Seq System. Biotechniques (2011) 1.10
The role of angiopoietins in the development of endothelial cells from cord blood CD34+ progenitors. Blood (2004) 1.09
Helicobacter pylori induces beta3GnT5 in human gastric cell lines, modulating expression of the SabA ligand sialyl-Lewis x. J Clin Invest (2008) 1.09
Reciprocal patterns of methylation of H3K36 and H3K27 on proximal vs. distal IgVH genes are modulated by IL-7 and Pax5. Proc Natl Acad Sci U S A (2008) 1.08
Uncovering the interplay between CD8, CD4 and antibody responses to complex pathogens. Future Microbiol (2010) 1.07
The relevance of citrullinated vimentin in the production of antibodies against citrullinated proteins and the pathogenesis of rheumatoid arthritis. Rheumatology (Oxford) (2011) 1.07
Shorter CAG repeats in the androgen receptor gene may enhance hyperandrogenicity in polycystic ovary syndrome. Gynecol Endocrinol (2008) 1.06
Functional role of gangliotetraosylceramide in epithelial-to-mesenchymal transition process induced by hypoxia and by TGF-{beta}. FASEB J (2010) 1.05
Natural-like replication of an unnatural base pair for the expansion of the genetic alphabet and biotechnology applications. J Am Chem Soc (2013) 1.05
Regulated and aberrant glycosylation modulate cardiac electrical signaling. Proc Natl Acad Sci U S A (2009) 1.05
Glycogene expression in conjunctiva of patients with dry eye: downregulation of Notch signaling. Invest Ophthalmol Vis Sci (2008) 1.04
Biomarkers for early and late stage chronic allograft nephropathy by proteogenomic profiling of peripheral blood. PLoS One (2009) 1.03
Deconvoluting post-transplant immunity: cell subset-specific mapping reveals pathways for activation and expansion of memory T, monocytes and B cells. PLoS One (2010) 1.03
Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annua. BMC Plant Biol (2013) 1.03
PhenoChipping of psychotic disorders: a novel approach for deconstructing and quantitating psychiatric phenotypes. Am J Med Genet B Neuropsychiatr Genet (2006) 1.02
Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline. BMC Bioinformatics (2010) 1.02
Assessment of microbial diversity in biofilms recovered from endotracheal tubes using culture dependent and independent approaches. PLoS One (2012) 1.02
Application of microdroplet PCR for large-scale targeted bisulfite sequencing. Genome Res (2011) 1.01
Citrullinated vimentin as an important antigen in immune complexes from synovial fluid of rheumatoid arthritis patients with antibodies against citrullinated proteins. Arthritis Res Ther (2010) 0.99
Real-time PCR expression profiling of genes encoding potential virulence factors in Candida albicans biofilms: identification of model-dependent and -independent gene expression. BMC Microbiol (2010) 0.99
Evidence for disruption of sphingolipid metabolism in schizophrenia. J Neurosci Res (2009) 0.99
In vivo relevance of citrullinated proteins and the challenges in their detection. Proteomics (2012) 0.99
Chronically inflamed synovium from spondyloarthropathy and rheumatoid arthritis investigated by protein expression profiling followed by tandem mass spectrometry. Proteomics (2005) 0.99
Defects in skin gamma delta T cell function contribute to delayed wound repair in rapamycin-treated mice. J Immunol (2008) 0.99
TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes. Genome Biol (2013) 0.98
The infectivity and host range of the ecotropic porcine endogenous retrovirus, PERV-C, is modulated by residues in the C-terminal region of its surface envelope protein. Virology (2005) 0.98
Porcine endogenous retrovirus infects but does not replicate in nonhuman primate primary cells and cell lines. J Virol (2002) 0.98
Suspension fluorescence in situ hybridization (S-FISH) combined with automatic detection and laser microdissection for STR profiling of male cells in male/female mixtures. Int J Legal Med (2009) 0.98
A single early activation of invariant NK T cells confers long-term protection against collagen-induced arthritis in a ligand-specific manner. J Immunol (2007) 0.97
Genome-wide analysis of immune activation in human T and B cells reveals distinct classes of alternatively spliced genes. PLoS One (2009) 0.97
Ectopic B-cell clusters that infiltrate transplanted human kidneys are clonal. Proc Natl Acad Sci U S A (2011) 0.96
Why are some amyloidoses systemic? Does hepatic "chaperoning at a distance" prevent cardiac deposition in a transgenic model of human senile systemic (transthyretin) amyloidosis? FASEB J (2012) 0.96
Fetal microchimeric cells in blood of women with an autoimmune thyroid disease. PLoS One (2011) 0.96