Published in PLoS Genet on July 05, 2012
Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex. PLoS One (2016) 1.58
Changes in the lung microbiome following lung transplantation include the emergence of two distinct Pseudomonas species with distinct clinical associations. PLoS One (2014) 1.39
Metabolic and transcriptomic changes induced in Arabidopsis by the rhizobacterium Pseudomonas fluorescens SS101. Plant Physiol (2012) 1.29
Unraveling the plant microbiome: looking back and future perspectives. Front Microbiol (2014) 1.23
Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities. MBio (2014) 1.14
Promise for plant pest control: root-associated pseudomonads with insecticidal activities. Front Plant Sci (2013) 1.13
Importance of positioning for microbial evolution. Proc Natl Acad Sci U S A (2014) 1.13
Microbiology, genomics, and clinical significance of the Pseudomonas fluorescens species complex, an unappreciated colonizer of humans. Clin Microbiol Rev (2014) 1.10
Interactions in the microbiome: communities of organisms and communities of genes. FEMS Microbiol Rev (2013) 1.05
Domain shuffling in a sensor protein contributed to the evolution of insect pathogenicity in plant-beneficial Pseudomonas protegens. PLoS Pathog (2014) 1.03
Plant growth promotion induced by phosphate solubilizing endophytic Pseudomonas isolates. Front Microbiol (2015) 1.01
Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction. BMC Genomics (2013) 1.00
Genome Sequence of Pseudomonas chlororaphis Strain PA23. Genome Announc (2014) 0.99
Adaptation genomics of a small-colony variant in a Pseudomonas chlororaphis 30-84 biofilm. Appl Environ Microbiol (2014) 0.97
Complete genome sequence of the biocontrol strain Pseudomonas protegens Cab57 discovered in Japan reveals strain-specific diversity of this species. PLoS One (2014) 0.97
The antimicrobial compound xantholysin defines a new group of Pseudomonas cyclic lipopeptides. PLoS One (2013) 0.97
Identification, structure, and function of a novel type VI secretion peptidoglycan glycoside hydrolase effector-immunity pair. J Biol Chem (2013) 0.97
Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis. Appl Environ Microbiol (2015) 0.95
Complete Genome Sequence of Biocontrol Strain Pseudomonas fluorescens LBUM223. Genome Announc (2015) 0.93
Commonalities and differences of T3SSs in rhizobia and plant pathogenic bacteria. Front Plant Sci (2014) 0.92
The genome of Pseudomonas fluorescens strain R124 demonstrates phenotypic adaptation to the mineral environment. J Bacteriol (2013) 0.89
Draft Genome Sequence of Pseudomonas sp. Strain CMAA 1215, a Plant Growth-Promoting Bacterium Isolated from a Brazilian Mangrove. Genome Announc (2013) 0.88
Comparative genomic analysis indicates that niche adaptation of terrestrial Flavobacteria is strongly linked to plant glycan metabolism. PLoS One (2013) 0.88
Comparative genomics of Pseudomonas syringae pv. syringae strains B301D and HS191 and insights into intrapathovar traits associated with plant pathogenesis. Microbiologyopen (2015) 0.87
Pseudomonas fluorescens NZI7 repels grazing by C. elegans, a natural predator. ISME J (2013) 0.87
Independent Co-Option of a Tailed Bacteriophage into a Killing Complex in Pseudomonas. MBio (2015) 0.86
Getting the ecology into interactions between plants and the plant growth-promoting bacterium Pseudomonas fluorescens. Front Plant Sci (2013) 0.85
Different Ancestries of R Tailocins in Rhizospheric Pseudomonas Isolates. Genome Biol Evol (2015) 0.85
Genomes of Alteromonas australica, a world apart. BMC Genomics (2014) 0.85
Comparative genomics and metabolic profiling of the genus Lysobacter. BMC Genomics (2015) 0.85
Unearthing the genomes of plant-beneficial Pseudomonas model strains WCS358, WCS374 and WCS417. BMC Genomics (2015) 0.84
Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment. Front Microbiol (2015) 0.84
Potential impacts of aquatic pollutants: sub-clinical antibiotic concentrations induce genome changes and promote antibiotic resistance. Front Microbiol (2015) 0.83
Take-all of Wheat and Natural Disease Suppression: A Review. Plant Pathol J (2013) 0.83
Variable suites of non-effector genes are co-regulated in the type III secretion virulence regulon across the Pseudomonas syringae phylogeny. PLoS Pathog (2014) 0.83
Soil type dependent rhizosphere competence and biocontrol of two bacterial inoculant strains and their effects on the rhizosphere microbial community of field-grown lettuce. PLoS One (2014) 0.83
Mutation rate, spectrum, topology, and context-dependency in the DNA mismatch repair-deficient Pseudomonas fluorescens ATCC948. Genome Biol Evol (2014) 0.83
Insect pathogenicity in plant-beneficial pseudomonads: phylogenetic distribution and comparative genomics. ISME J (2016) 0.83
Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus. Front Plant Sci (2014) 0.82
Fluorescent Pseudomonas Strains with only Few Plant-Beneficial Properties Are Favored in the Maize Rhizosphere. Front Plant Sci (2016) 0.81
Comparative genomic and functional analyses: unearthing the diversity and specificity of nematicidal factors in Pseudomonas putida strain 1A00316. Sci Rep (2016) 0.81
Horizontal gene transfer of a bacterial insect toxin gene into the Epichloë fungal symbionts of grasses. Sci Rep (2014) 0.81
Complete Genome Sequence of the Sugar Cane Endophyte Pseudomonas aurantiaca PB-St2, a Disease-Suppressive Bacterium with Antifungal Activity toward the Plant Pathogen Colletotrichum falcatum. Genome Announc (2014) 0.81
Draft Genome Sequences of Seven Pseudomonas fluorescens Subclade III Strains Isolated from Cystic Fibrosis Patients. Genome Announc (2015) 0.81
Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds. Front Microbiol (2015) 0.81
Pleiotropic effects of GacA on Pseudomonas fluorescens Pf0-1 in vitro and in soil. Appl Environ Microbiol (2013) 0.80
The Sensor Kinase GacS Negatively Regulates Flagellar Formation and Motility in a Biocontrol Bacterium, Pseudomonas chlororaphis O6. Plant Pathol J (2014) 0.80
Ubiquitin activates patatin-like phospholipases from multiple bacterial species. J Bacteriol (2014) 0.80
Diversity of Aquatic Pseudomonas Species and Their Activity against the Fish Pathogenic Oomycete Saprolegnia. PLoS One (2015) 0.80
Ferric-pyoverdine recognition by Fpv outer membrane proteins of Pseudomonas protegens Pf-5. J Bacteriol (2012) 0.80
Pseudomonas fluorescens SBW25 produces furanomycin, a non-proteinogenic amino acid with selective antimicrobial properties. BMC Microbiol (2013) 0.80
Towards an Enhanced Understanding of Plant-Microbiome Interactions to Improve Phytoremediation: Engineering the Metaorganism. Front Microbiol (2016) 0.80
Whole genome analysis of halotolerant and alkalotolerant plant growth-promoting rhizobacterium Klebsiella sp. D5A. Sci Rep (2016) 0.80
Genome Analysis of Pseudomonas fluorescens PCL1751: A Rhizobacterium that Controls Root Diseases and Alleviates Salt Stress for Its Plant Host. PLoS One (2015) 0.80
Probiotic Diversity Enhances Rhizosphere Microbiome Function and Plant Disease Suppression. MBio (2016) 0.79
Epistasis between antibiotic resistance mutations and genetic background shape the fitness effect of resistance across species of Pseudomonas. Proc Biol Sci (2016) 0.79
Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System. Front Plant Sci (2016) 0.79
Evolutionary patchwork of an insecticidal toxin shared between plant-associated pseudomonads and the insect pathogens Photorhabdus and Xenorhabdus. BMC Genomics (2015) 0.79
Characterization of Toxin Complex Gene Clusters and Insect Toxicity of Bacteria Representing Four Subgroups of Pseudomonas fluorescens. PLoS One (2016) 0.79
Biocontrol and plant growth-promoting activity of rhizobacteria from Chinese fields with contaminated soils. Microb Biotechnol (2014) 0.79
The Phenazine 2-Hydroxy-Phenazine-1-Carboxylic Acid Promotes Extracellular DNA Release and Has Broad Transcriptomic Consequences in Pseudomonas chlororaphis 30-84. PLoS One (2016) 0.79
A novel phosphatidylinositol 4,5-bisphosphate binding domain mediates plasma membrane localization of ExoU and other patatin-like phospholipases. J Biol Chem (2014) 0.78
Lipopeptide biosynthesis in Pseudomonas fluorescens is regulated by the protease complex ClpAP. BMC Microbiol (2015) 0.78
pA506, a conjugative plasmid of the plant epiphyte Pseudomonas fluorescens A506. Appl Environ Microbiol (2013) 0.78
Whole genome sequencing and analysis of plant growth promoting bacteria isolated from the rhizosphere of plantation crops coconut, cocoa and arecanut. PLoS One (2014) 0.78
Amino acid racemization in Pseudomonas putida KT2440. J Bacteriol (2013) 0.78
An Interspecies Signaling System Mediated by Fusaric Acid Has Parallel Effects on Antifungal Metabolite Production by Pseudomonas protegens Strain Pf-5 and Antibiosis of Fusarium spp. Appl Environ Microbiol (2015) 0.78
Mangotoxin production of Pseudomonas syringae pv. syringae is regulated by MgoA. BMC Microbiol (2014) 0.78
Type III secretion system and virulence markers highlight similarities and differences between human- and plant-associated pseudomonads related to Pseudomonas fluorescens and P. putida. Appl Environ Microbiol (2015) 0.78
Comparative genomic analysis of multiple strains of two unusual plant pathogens: Pseudomonas corrugata and Pseudomonas mediterranea. Front Microbiol (2015) 0.78
Proteomic Analysis of a Global Regulator GacS Sensor Kinase in the Rhizobacterium, Pseudomonas chlororaphis O6. Plant Pathol J (2014) 0.78
The Rsm regulon of plant growth-promoting Pseudomonas fluorescens SS101: role of small RNAs in regulation of lipopeptide biosynthesis. Microb Biotechnol (2014) 0.78
Draft genome sequence analysis of a Pseudomonas putida W15Oct28 strain with antagonistic activity to Gram-positive and Pseudomonas sp. pathogens. PLoS One (2014) 0.77
Symptoms of Fern Distortion Syndrome resulting from inoculation with opportunistic endophytic fluorescent Pseudomonas spp. PLoS One (2013) 0.77
Draft Genome Sequences of Five Pseudomonas fluorescens Subclade I and II Strains, Isolated from Human Respiratory Samples. Genome Announc (2015) 0.77
Genome Sequence of Pseudomonas sp. Strain P482, a Tomato Rhizosphere Isolate with Broad-Spectrum Antimicrobial Activity. Genome Announc (2014) 0.77
Persistence and resistance as complementary bacterial adaptations to antibiotics. J Evol Biol (2016) 0.77
Enterocyte-Associated Microbiome of the Hadza Hunter-Gatherers. Front Microbiol (2016) 0.77
Draft Genome Sequence of Pseudomonas fluorescens LMG 5329, a White Line-Inducing Principle-Producing Bioindicator for the Mushroom Pathogen Pseudomonas tolaasii. Genome Announc (2013) 0.77
Comparative genomic analysis and phenazine production of Pseudomonas chlororaphis, a plant growth-promoting rhizobacterium. Genom Data (2015) 0.76
A novel family of integrases associated with prophages and genomic islands integrated within the tRNA-dihydrouridine synthase A (dusA) gene. Nucleic Acids Res (2015) 0.76
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data. Sci Rep (2016) 0.76
Nano-CuO and interaction with nano-ZnO or soil bacterium provide evidence for the interference of nanoparticles in metal nutrition of plants. Ecotoxicology (2014) 0.76
When Genome-Based Approach Meets the "Old but Good": Revealing Genes Involved in the Antibacterial Activity of Pseudomonas sp. P482 against Soft Rot Pathogens. Front Microbiol (2016) 0.76
High levels of cyclic-di-GMP in plant-associated Pseudomonas correlate with evasion of plant immunity. Mol Plant Pathol (2015) 0.76
A Novel Protein Elicitor (PeBA1) from Bacillus amyloliquefaciens NC6 Induces Systemic Resistance in Tobacco. Int J Biol Sci (2016) 0.76
Degradation of Benzene by Pseudomonas veronii 1YdBTEX2 and 1YB2 Is Catalyzed by Enzymes Encoded in Distinct Catabolism Gene Clusters. Appl Environ Microbiol (2015) 0.76
Genome features of Pseudomonas putida LS46, a novel polyhydroxyalkanoate producer and its comparison with other P. putida strains. AMB Express (2014) 0.76
Rice-Infecting Pseudomonas Genomes Are Highly Accessorized and Harbor Multiple Putative Virulence Mechanisms to Cause Sheath Brown Rot. PLoS One (2015) 0.76
Expression of the translocator protein (TSPO) from Pseudomonas fluorescens Pf0-1 requires the stress regulatory sigma factors AlgU and RpoH. Front Microbiol (2015) 0.76
An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota. Environ Microbiol (2015) 0.76
Antimicrobial and Insecticidal: Cyclic Lipopeptides and Hydrogen Cyanide Produced by Plant-Beneficial Pseudomonas Strains CHA0, CMR12a, and PCL1391 Contribute to Insect Killing. Front Microbiol (2017) 0.76
Comparative genomics of Pseudomonas fluorescens subclade III strains from human lungs. BMC Genomics (2015) 0.76
Evolution of REP diversity: a comparative study. BMC Genomics (2013) 0.76
Chemotactic Motility of Pseudomonas fluorescens F113 under Aerobic and Denitrification Conditions. PLoS One (2015) 0.76
Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen. Sci Rep (2016) 0.75
Draft Genome Sequence of the Biocontrol and Plant Growth-Promoting Rhizobacterium Pseudomonas fluorescens strain UM270. Stand Genomic Sci (2016) 0.75
Complete genome of Pseudomonas chlororaphis strain UFB2, a soil bacterium with antibacterial activity against bacterial canker pathogen of tomato. Stand Genomic Sci (2015) 0.75
Impact of a Bacterial Volatile 2,3-Butanediol on Bacillus subtilis Rhizosphere Robustness. Front Microbiol (2016) 0.75
The Anti-Phytophthora Effect of Selected Potato-Associated Pseudomonas Strains: From the Laboratory to the Field. Front Microbiol (2015) 0.75
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 220.97
MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (2003) 130.85
The aerobic pseudomonads: a taxonomic study. J Gen Microbiol (1966) 57.28
The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci (1992) 44.38
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One (2010) 24.31
Microbial gene identification using interpolated Markov models. Nucleic Acids Res (1998) 20.26
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature (1997) 19.08
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res (2007) 15.56
InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res (2011) 13.45
COLORIMETRIC ESTIMATION OF INDOLEACETIC ACID. Plant Physiol (1951) 11.98
ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res (2006) 9.58
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Res (2011) 9.22
De novo identification of repeat families in large genomes. Bioinformatics (2005) 7.95
A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes. Proc Natl Acad Sci U S A (2006) 7.17
Plant-growth-promoting rhizobacteria. Annu Rev Microbiol (2009) 6.48
Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science (2011) 5.89
Type VI secretion delivers bacteriolytic effectors to target cells. Nature (2011) 5.56
Bacterial iron sources: from siderophores to hemophores. Annu Rev Microbiol (2004) 5.55
Biological control of soil-borne pathogens by fluorescent pseudomonads. Nat Rev Microbiol (2005) 5.45
The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts. Proc Natl Acad Sci U S A (2002) 5.28
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes. Nucleic Acids Res (2010) 5.23
Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. Nat Biotechnol (2005) 4.65
Production of the antibiotic phenazine-1-carboxylic Acid by fluorescent pseudomonas species in the rhizosphere of wheat. Appl Environ Microbiol (1990) 4.42
Bacterial volatiles promote growth in Arabidopsis. Proc Natl Acad Sci U S A (2003) 4.37
Pseudomonas syringae phytotoxins: mode of action, regulation, and biosynthesis by peptide and polyketide synthetases. Microbiol Mol Biol Rev (1999) 3.83
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biol (2009) 3.63
The type III secretion system of Pseudomonas aeruginosa: infection by injection. Nat Rev Microbiol (2009) 3.56
Alternative pathways of carbohydrate utilization in pseudomonads. Annu Rev Microbiol (1984) 3.41
Indole-3-acetic acid in microbial and microorganism-plant signaling. FEMS Microbiol Rev (2007) 3.21
NRPSpredictor2--a web server for predicting NRPS adenylation domain specificity. Nucleic Acids Res (2011) 3.19
Microbial populations responsible for specific soil suppressiveness to plant pathogens. Annu Rev Phytopathol (2002) 3.19
The pyocins of Pseudomonas aeruginosa. Biochimie (2002) 3.15
GABA in plants: just a metabolite? Trends Plant Sci (2004) 3.12
Metabolism and functions of gamma-aminobutyric acid. Trends Plant Sci (1999) 3.04
Pseudomonas genomes: diverse and adaptable. FEMS Microbiol Rev (2011) 2.96
Gac/Rsm signal transduction pathway of gamma-proteobacteria: from RNA recognition to regulation of social behaviour. Mol Microbiol (2007) 2.94
Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology (2000) 2.73
A novel two-component system controls the expression of Pseudomonas aeruginosa fimbrial cup genes. Mol Microbiol (2005) 2.71
The chaperone/usher pathways of Pseudomonas aeruginosa: identification of fimbrial gene clusters (cup) and their involvement in biofilm formation. Proc Natl Acad Sci U S A (2001) 2.68
Experiments with some microorganisms which utilize ethane and hydrogen. J Bacteriol (1958) 2.63
Genomics of secondary metabolite production by Pseudomonas spp. Nat Prod Rep (2009) 2.54
DNA sequence-based analysis of the Pseudomonas species. Environ Microbiol (2010) 2.53
Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates. PLoS Pathog (2011) 2.50
In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages. Microbiology (2007) 2.45
Regulation of antibiotic production in root-colonizing Peudomonas spp. and relevance for biological control of plant disease. Annu Rev Phytopathol (2003) 2.44
Regulation of the Bacillus subtilis alsS, alsD, and alsR genes involved in post-exponential-phase production of acetoin. J Bacteriol (1993) 2.35
The genomisotopic approach: a systematic method to isolate products of orphan biosynthetic gene clusters. Chem Biol (2007) 2.32
Genetic analysis of the antifungal activity of a soilborne Pseudomonas aureofaciens strain. Appl Environ Microbiol (1991) 2.32
Phenazine compounds in fluorescent Pseudomonas spp. biosynthesis and regulation. Annu Rev Phytopathol (2006) 2.31
Adaptation of Pseudomonas fluorescens to the plant rhizosphere. Environ Microbiol (1999) 2.26
Type III secretion: more systems than you think. Physiology (Bethesda) (2005) 2.26
Antibiotic production by bacterial biocontrol agents. Antonie Van Leeuwenhoek (2002) 2.24
Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida. FEMS Microbiol Rev (2011) 2.24
Palindromic units are part of a new bacterial interspersed mosaic element (BIME). Nucleic Acids Res (1991) 2.22
Natural functions of lipopeptides from Bacillus and Pseudomonas: more than surfactants and antibiotics. FEMS Microbiol Rev (2010) 2.21
What is type VI secretion doing in all those bugs? Trends Microbiol (2010) 2.20
Pyoverdine siderophores: from biogenesis to biosignificance. Trends Microbiol (2006) 2.19
The sigma factor sigma s affects antibiotic production and biological control activity of Pseudomonas fluorescens Pf-5. Proc Natl Acad Sci U S A (1995) 2.02
The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation. PLoS Genet (2011) 2.01
Molecular characterization of the phenylacetic acid catabolic pathway in Pseudomonas putida U: the phenylacetyl-CoA catabolon. Proc Natl Acad Sci U S A (1998) 1.87
Cyclic lipopeptide production by plant-associated Pseudomonas spp.: diversity, activity, biosynthesis, and regulation. Mol Plant Microbe Interact (2006) 1.79
Microcins, gene-encoded antibacterial peptides from enterobacteria. Nat Prod Rep (2007) 1.75
Acetoin metabolism in bacteria. Crit Rev Microbiol (2007) 1.73
Pseudomonas protegens sp. nov., widespread plant-protecting bacteria producing the biocontrol compounds 2,4-diacetylphloroglucinol and pyoluteorin. Syst Appl Microbiol (2011) 1.64
Metabolism and function of phenazines in bacteria: impacts on the behavior of bacteria in the environment and biotechnological processes. Appl Microbiol Biotechnol (2010) 1.63
Iron uptake and metabolism in pseudomonads. Appl Microbiol Biotechnol (2010) 1.62
The Bacillus subtilis ydjL (bdhA) gene encodes acetoin reductase/2,3-butanediol dehydrogenase. Appl Environ Microbiol (2008) 1.60
Protein secretion systems in Pseudomonas aeruginosa: A wealth of pathogenic weapons. Int J Med Microbiol (2010) 1.60
Characterization of the genes of the 2,3-butanediol operons from Klebsiella terrigena and Enterobacter aerogenes. J Bacteriol (1993) 1.52
Salicylic Acid Biosynthetic Genes Expressed in Pseudomonas fluorescens Strain P3 Improve the Induction of Systemic Resistance in Tobacco Against Tobacco Necrosis Virus. Phytopathology (1998) 1.52
Genome-based discovery, structure prediction and functional analysis of cyclic lipopeptide antibiotics in Pseudomonas species. Mol Microbiol (2007) 1.51
Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5. BMC Microbiol (2009) 1.50
Insecticidal toxins from Photorhabdus bacteria and their potential use in agriculture. Toxicon (2006) 1.50
Pseudomonas brassicacearum sp. nov. and Pseudomonas thivervalensis sp. nov., two root-associated bacteria isolated from Brassica napus and Arabidopsis thaliana. Int J Syst Evol Microbiol (2000) 1.49
Iron uptake regulation in Pseudomonas aeruginosa. Biometals (2009) 1.48
Induced Systemic Resistance by Fluorescent Pseudomonas spp. Phytopathology (2007) 1.46
TagR promotes PpkA-catalysed type VI secretion activation in Pseudomonas aeruginosa. Mol Microbiol (2009) 1.46
Inactivation of the GacA response regulator in Pseudomonas fluorescens Pf-5 has far-reaching transcriptomic consequences. Environ Microbiol (2010) 1.46
Type III secretion in plant growth-promoting Pseudomonas fluorescens SBW25. Mol Microbiol (2001) 1.44
The type VI secretion system: a multipurpose delivery system with a phage-like machinery. Mol Plant Microbe Interact (2011) 1.41
The type III secretion injectisome, a complex nanomachine for intracellular 'toxin' delivery. Biol Chem (2010) 1.41
Assessment and management of soil microbial community structure for disease suppression. Annu Rev Phytopathol (2004) 1.36
Functional genomics by NMR spectroscopy. Phenylacetate catabolism in Escherichia coli. Eur J Biochem (2003) 1.35
GacS-dependent production of 2R, 3R-butanediol by Pseudomonas chlororaphis O6 is a major determinant for eliciting systemic resistance against Erwinia carotovora but not against Pseudomonas syringae pv. tabaci in tobacco. Mol Plant Microbe Interact (2006) 1.35
Massetolide A biosynthesis in Pseudomonas fluorescens. J Bacteriol (2007) 1.33
Bacteria killing their own kind: novel bacteriocins of Pseudomonas and other gamma-proteobacteria. Trends Microbiol (2002) 1.30
Hal: an automated pipeline for phylogenetic analyses of genomic data. PLoS Curr (2011) 1.30
Bacteriophages of Pseudomonas. Future Microbiol (2010) 1.28
Pseudomonas aeruginosa uses type III secretion system to kill biofilm-associated amoebae. ISME J (2008) 1.28
Secondary metabolite- and endochitinase-dependent antagonism toward plant-pathogenic microfungi of pseudomonas fluorescens isolates from sugar beet rhizosphere Appl Environ Microbiol (1998) 1.25
Assembly of fimbrial structures in Pseudomonas aeruginosa: functionality and specificity of chaperone-usher machineries. J Bacteriol (2007) 1.24
Biochemical, genetic, and zoosporicidal properties of cyclic lipopeptide surfactants produced by Pseudomonas fluorescens. Appl Environ Microbiol (2003) 1.22
Temperature and growth phase influence the outer-membrane proteome and the expression of a type VI secretion system in Yersinia pestis. Microbiology (2009) 1.19
Role of the cyclic lipopeptide massetolide A in biological control of Phytophthora infestans and in colonization of tomato plants by Pseudomonas fluorescens. New Phytol (2007) 1.19
Molecular analysis of a novel gene cluster encoding an insect toxin in plant-associated strains of Pseudomonas fluorescens. Environ Microbiol (2008) 1.18
Species-specific repetitive extragenic palindromic (REP) sequences in Pseudomonas putida. Nucleic Acids Res (2002) 1.18
The Pseudomonas aeruginosa pathogenicity island PAPI-1 is transferred via a novel type IV pilus. J Bacteriol (2010) 1.17
Formation of an F' plasmid by recombination between imperfectly repeated chromosomal Rep sequences: a closer look at an old friend (F'(128) pro lac). J Bacteriol (2003) 1.16
Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum. J Bacteriol (2011) 1.16
Genome sequence of the human malaria parasite Plasmodium falciparum. Nature (2002) 37.89
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". Proc Natl Acad Sci U S A (2005) 14.59
The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science (2007) 11.15
EcoCyc: a comprehensive database resource for Escherichia coli. Nucleic Acids Res (2005) 11.01
The EcoCyc Database. Nucleic Acids Res (2002) 10.42
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature (2003) 10.38
The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science (2004) 9.97
Genome sequence of Aedes aegypti, a major arbovirus vector. Science (2007) 9.19
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. PLoS Biol (2004) 7.95
EcoCyc: a comprehensive view of Escherichia coli biology. Nucleic Acids Res (2008) 7.05
Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nat Biotechnol (2002) 6.96
The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature (2008) 6.70
Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics. Bioinformatics (2004) 5.91
Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science (2011) 5.89
The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc Natl Acad Sci U S A (2003) 5.62
Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae. Proc Natl Acad Sci U S A (2002) 5.28
The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts. Proc Natl Acad Sci U S A (2002) 5.28
Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species. PLoS Biol (2005) 5.22
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature (2004) 5.00
Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucleic Acids Res (2004) 4.97
Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. Nat Biotechnol (2005) 4.65
Reducing assembly complexity of microbial genomes with single-molecule sequencing. Genome Biol (2013) 4.55
Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83. J Bacteriol (2003) 4.41
Comparative genomics of emerging human ehrlichiosis agents. PLoS Genet (2006) 4.23
Complete genome sequence of the Q-fever pathogen Coxiella burnetii. Proc Natl Acad Sci U S A (2003) 4.20
Structural flexibility in the Burkholderia mallei genome. Proc Natl Acad Sci U S A (2004) 4.13
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science (2009) 4.05
The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature (2010) 3.60
Mass spectral molecular networking of living microbial colonies. Proc Natl Acad Sci U S A (2012) 3.56
The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nat Biotechnol (2004) 3.43
Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa. PLoS Pathog (2007) 3.27
ToxoDB: accessing the Toxoplasma gondii genome. Nucleic Acids Res (2003) 3.24
The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium. Proc Natl Acad Sci U S A (2002) 3.19
Microbial populations responsible for specific soil suppressiveness to plant pathogens. Annu Rev Phytopathol (2002) 3.19
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses. Proc Natl Acad Sci U S A (2005) 3.10
TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels. Nucleic Acids Res (2006) 3.10
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes. Science (2005) 3.10
Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre. Environ Microbiol (2009) 2.93
Genomic and functional adaptation in surface ocean planktonic prokaryotes. Nature (2010) 2.93
Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000. Proc Natl Acad Sci U S A (2005) 2.85
Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens. Genome Res (2006) 2.84
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol (2009) 2.75
Going back to the roots: the microbial ecology of the rhizosphere. Nat Rev Microbiol (2013) 2.73
Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. Science (2005) 2.71
Deep sequencing of small RNAs in tomato for virus and viroid identification and strain differentiation. PLoS One (2012) 2.70
Composite genome map and recombination parameters derived from three archetypal lineages of Toxoplasma gondii. Nucleic Acids Res (2005) 2.64
Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes. Proc Natl Acad Sci U S A (2004) 2.60
The value of complete microbial genome sequencing (you get what you pay for). J Bacteriol (2002) 2.58
Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage. J Bacteriol (2003) 2.51
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. BMC Genomics (2008) 2.51
TransportDB: a relational database of cellular membrane transport systems. Nucleic Acids Res (2004) 2.44
The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2. PLoS Biol (2006) 2.43
Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. J Bacteriol (2005) 2.38
Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). PLoS Biol (2004) 2.36
Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic. BMC Biol (2006) 2.35
The genomisotopic approach: a systematic method to isolate products of orphan biosynthetic gene clusters. Chem Biol (2007) 2.32