PubRank

Gary L Andersen

Author PubWeight™ 157.11‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 2009 15.93
2 An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J 2011 13.64
3 Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res 2008 9.09
4 Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science 2010 6.73
5 Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science 2011 5.89
6 High-density microarray of small-subunit ribosomal DNA probes. Appl Environ Microbiol 2002 4.95
7 High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb Ecol 2007 4.81
8 Urban aerosols harbor diverse and dynamic bacterial populations. Proc Natl Acad Sci U S A 2006 4.62
9 Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol 2006 4.09
10 Development of a high-volume aerosol collection system for the identification of air-borne micro-organisms. Lett Appl Microbiol 2002 4.02
11 Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray. FEMS Microbiol Lett 2005 3.42
12 Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients. PLoS One 2010 3.38
13 Chronic kidney disease alters intestinal microbial flora. Kidney Int 2012 2.58
14 Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata. ISME J 2009 2.44
15 Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen. J Bacteriol 2006 2.08
16 Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis. Appl Environ Microbiol 2003 2.01
17 Environmental genomics reveals a single-species ecosystem deep within Earth. Science 2008 1.98
18 Long-term sustainability of a high-energy, low-diversity crustal biome. Science 2006 1.97
19 Selective progressive response of soil microbial community to wild oat roots. ISME J 2008 1.87
20 Environmental microarray analyses of Antarctic soil microbial communities. ISME J 2008 1.84
21 Genome plasticity in Yersinia pestis. Microbiology 2002 1.66
22 Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. ISME J 2009 1.58
23 Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus. J Bacteriol 2005 1.49
24 A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells. ISME J 2008 1.48
25 Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing. Appl Environ Microbiol 2009 1.41
26 Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico. Environ Sci Technol 2013 1.38
27 Pyrosequencing analysis of bacterial biofilm communities in water meters of a drinking water distribution system. Appl Environ Microbiol 2010 1.35
28 Animal-to-animal variation in fecal microbial diversity among beef cattle. Appl Environ Microbiol 2010 1.33
29 Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool. BMC Bioinformatics 2007 1.33
30 PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip. Appl Environ Microbiol 2011 1.32
31 Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill. PLoS One 2012 1.32
32 Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase. Appl Environ Microbiol 2008 1.31
33 Characterization of coastal urban watershed bacterial communities leads to alternative community-based indicators. PLoS One 2010 1.24
34 Use of subtractive hybridization for comprehensive surveys of prokaryotic genome differences. FEMS Microbiol Lett 2002 1.24
35 Bacterial community structure in geographically distributed biological wastewater treatment reactors. Environ Sci Technol 2010 1.16
36 Environmental determinants of and impact on childhood asthma by the bacterial community in household dust. Appl Environ Microbiol 2010 1.14
37 Microbial Response to the MC-252 Oil and Corexit 9500 in the Gulf of Mexico. Front Microbiol 2012 1.14
38 Comparative genomics of "Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced "Dehalococcoides" strains. Appl Environ Microbiol 2008 1.10
39 Assays for the rapid and specific identification of North American Yersinia pestis and the common laboratory strain CO92. Biotechniques 2008 1.09
40 Identification of genes associated with survival of Salmonella enterica serovar Enteritidis in chicken egg albumen. Appl Environ Microbiol 2006 1.08
41 Transcriptomic microarray analysis of corrinoid responsive genes in Dehalococcoides ethenogenes strain 195. FEMS Microbiol Lett 2009 1.07
42 Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses. ISME J 2011 1.05
43 Soil microbial community successional patterns during forest ecosystem restoration. Appl Environ Microbiol 2011 1.05
44 New perspectives on viable microbial communities in low-biomass cleanroom environments. ISME J 2012 1.03
45 Simrank: Rapid and sensitive general-purpose k-mer search tool. BMC Ecol 2011 1.03
46 Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray. ISME J 2011 1.02
47 High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment. FEMS Microbiol Ecol 2012 1.02
48 Microbial and mineralogical characterizations of soils collected from the deep biosphere of the former Homestake gold mine, South Dakota. Microb Ecol 2010 1.01
49 Diversity of anaerobic microbes in spacecraft assembly clean rooms. Appl Environ Microbiol 2010 0.99
50 Microbial secondary succession in a chronosequence of chalk grasslands. ISME J 2010 0.98
51 Caulobacter crescentus as a whole-cell uranium biosensor. Appl Environ Microbiol 2007 0.98
52 Changes in the microbial community structure of bacteria, archaea and fungi in response to elevated CO(2) and warming in an Australian native grassland soil. Environ Microbiol 2012 0.98
53 Microbial community dynamics of an urban drinking water distribution system subjected to phases of chloramination and chlorination treatments. Appl Environ Microbiol 2012 0.96
54 Developing microbe-plant interactions for applications in plant-growth promotion and disease control, production of useful compounds, remediation and carbon sequestration. Microb Biotechnol 2009 0.95
55 Changes of soil bacterial diversity as a consequence of agricultural land use in a semi-arid ecosystem. PLoS One 2013 0.95
56 Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray. Appl Environ Microbiol 2010 0.94
57 Bacterial community structure corresponds to performance during cathodic nitrate reduction. ISME J 2010 0.94
58 Analysis of leaf and root transcriptomes of soil-grown Avena barbata plants. Plant Cell Physiol 2011 0.93
59 Evaluation of methods for the extraction of DNA from drinking water distribution system biofilms. Microbes Environ 2011 0.92
60 Microbial diversity in uranium mining-impacted soils as revealed by high-density 16S microarray and clone library. Microb Ecol 2010 0.92
61 Comparison of fecal biota from specific pathogen free and feral mice. Anaerobe 2006 0.92
62 Tackling the minority: sulfate-reducing bacteria in an archaea-dominated subsurface biofilm. ISME J 2012 0.91
63 Bacterial communities associated with a mineral weathering profile at a sulphidic mine tailings dump in arid Western Australia. FEMS Microbiol Ecol 2011 0.90
64 Intestinal microbiota as novel biomarkers of prior radiation exposure. Radiat Res 2012 0.89
65 PhyloChip™ microarray comparison of sampling methods used for coral microbial ecology. J Microbiol Methods 2011 0.88
66 Application of phylogenetic microarray analysis to discriminate sources of fecal pollution. Environ Sci Technol 2012 0.88
67 Comparison of innovative molecular approaches and standard spore assays for assessment of surface cleanliness. Appl Environ Microbiol 2011 0.87
68 Comparing bacterial community composition between healthy and white plague-like disease states in Orbicella annularis using PhyloChip™ G3 microarrays. PLoS One 2013 0.86
69 Diversity of bacterioplankton in contrasting Tibetan lakes revealed by high-density microarray and clone library analysis. FEMS Microbiol Ecol 2013 0.86
70 Influence of geogenic factors on microbial communities in metallogenic Australian soils. ISME J 2012 0.86
71 Humic acid-oxidizing, nitrate-reducing bacteria in agricultural soils. MBio 2011 0.86
72 Effect of rainfall-induced soil geochemistry dynamics on grassland soil microbial communities. Appl Environ Microbiol 2012 0.85
73 Global transcriptomic and proteomic responses of Dehalococcoides ethenogenes strain 195 to fixed nitrogen limitation. Appl Environ Microbiol 2011 0.85
74 The influence of in situ chemical oxidation on microbial community composition in groundwater contaminated with chlorinated solvents. Microb Ecol 2012 0.83
75 Bacterial diversity of weathered terrestrial Icelandic volcanic glasses. Microb Ecol 2010 0.83
76 Establishment of uncharacterized plasmids in Escherichia coli by in vitro transposition. FEMS Microbiol Lett 2002 0.82
77 Evaluation of molecular community analysis methods for discerning fecal sources and human waste. Water Res 2013 0.82
78 Microbial biogeography across a full-scale wastewater treatment plant transect: evidence for immigration between coupled processes. Appl Microbiol Biotechnol 2014 0.82
79 Truffle brûlés have an impact on the diversity of soil bacterial communities. PLoS One 2013 0.80
80 Bacterial diversity in the cecum of the world's largest living rodent (Hydrochoerus hydrochaeris). Microb Ecol 2011 0.79
81 Phylogenetic microarray analysis of a microbial community performing reductive dechlorination at a TCE-contaminated site. Environ Sci Technol 2011 0.79
82 Effects of TiO2 and Ag nanoparticles on polyhydroxybutyrate biosynthesis by activated sludge bacteria. Environ Sci Technol 2014 0.79
83 Ecogenomics reveals metals and land-use pressures on microbial communities in the waterways of a megacity. Environ Sci Technol 2015 0.76
84 Influence of trace erythromycin and eryhthromycin-H2O on carbon and nutrients removal and on resistance selection in sequencing batch reactors (SBRs). Appl Microbiol Biotechnol 2009 0.75
85 Microbial community structures of novel Icelandic hot spring systems revealed by PhyloChip G3 analysis. Astrobiology 2014 0.75