Published in Mol Microbiol on September 30, 2011
Retracted Reactome array: forging a link between metabolome and genome. Science (2009) 2.27
BioLayout(Java): versatile network visualisation of structural and functional relationships. Appl Bioinformatics (2005) 2.26
COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics. Bioinformatics (2003) 1.77
Myriads of protein families, and still counting. Genome Biol (2003) 1.75
Heavy metal tolerance and metal homeostasis in Pseudomonas putida as revealed by complete genome analysis. Environ Microbiol (2003) 1.61
Promoters in the environment: transcriptional regulation in its natural context. Nat Rev Microbiol (2005) 1.52
Export of autotransported proteins proceeds through an oligomeric ring shaped by C-terminal domains. EMBO J (2002) 1.50
Microbial responses to environmental arsenic. Biometals (2009) 1.48
Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene. J Biol Chem (2006) 1.45
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes. Nucleic Acids Res (2012) 1.42
Production of functional single-chain Fv antibodies in the cytoplasm of Escherichia coli. J Mol Biol (2002) 1.39
Exploiting the genetic and biochemical capacities of bacteria for the remediation of heavy metal pollution. FEMS Microbiol Rev (2002) 1.32
Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray. Environ Microbiol (2006) 1.29
Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440. Environ Microbiol (2011) 1.24
The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms. Environ Microbiol (2011) 1.20
Tracing explosives in soil with transcriptional regulators of Pseudomonas putida evolved for responding to nitrotoluenes. Microb Biotechnol (2008) 1.17
pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes. BMC Microbiol (2011) 1.15
The sigma54 regulon (sigmulon) of Pseudomonas putida. Environ Microbiol (2003) 1.14
Noise and robustness in prokaryotic regulatory networks. Annu Rev Microbiol (2010) 1.13
Functional transplantation of the sumoylation machinery into Escherichia coli. Protein Expr Purif (2004) 1.12
The environmental fate of organic pollutants through the global microbial metabolism. Mol Syst Biol (2007) 1.11
Transcriptional regulators à la carte: engineering new effector specificities in bacterial regulatory proteins. Curr Opin Biotechnol (2005) 1.11
Synthetic constructs in/for the environment: managing the interplay between natural and engineered Biology. FEBS Lett (2012) 1.09
Structural tolerance of bacterial autotransporters for folded passenger protein domains. Mol Microbiol (2004) 1.07
Thioredoxin fusions increase folding of single chain Fv antibodies in the cytoplasm of Escherichia coli: evidence that chaperone activity is the prime effect of thioredoxin. J Mol Biol (2006) 1.06
Beyond 100 genomes. Genome Biol (2003) 1.06
Development and preparation of a new serum protein reference material: feasibility studies and processing. Clin Chem Lab Med (2010) 1.03
The Entner-Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress. Environ Microbiol (2013) 1.02
Sinorhizobium meliloti fur-like (Mur) protein binds a fur box-like sequence present in the mntA promoter in a manganese-responsive manner. Appl Environ Microbiol (2007) 1.01
Engineering the soil bacterium Pseudomonas putida for arsenic methylation. Appl Environ Microbiol (2013) 1.00
Exploring the microbial biodegradation and biotransformation gene pool. Trends Biotechnol (2005) 1.00
Emergence of novel functions in transcriptional regulators by regression to stem protein types. Mol Microbiol (2007) 0.99
The phosphotransferase system formed by PtsP, PtsO, and PtsN proteins controls production of polyhydroxyalkanoates in Pseudomonas putida. J Bacteriol (2007) 0.99
Adaptation of the yeast URA3 selection system to gram-negative bacteria and generation of a {delta}betCDE Pseudomonas putida strain. Appl Environ Microbiol (2005) 0.98
Genetic evidence that catabolites of the Entner-Doudoroff pathway signal C source repression of the sigma54 Pu promoter of Pseudomonas putida. J Bacteriol (2004) 0.98
Regulatory tasks of the phosphoenolpyruvate-phosphotransferase system of Pseudomonas putida in central carbon metabolism. MBio (2012) 0.98
Evidence of in vivo cross talk between the nitrogen-related and fructose-related branches of the carbohydrate phosphotransferase system of Pseudomonas putida. J Bacteriol (2008) 0.96
Mining logic gates in prokaryotic transcriptional regulation networks. FEBS Lett (2008) 0.96
Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1,3-dichloroprop-1-ene. Metab Eng (2012) 0.95
The metabolic cost of flagellar motion in Pseudomonas putida KT2440. Environ Microbiol (2013) 0.93
SIREs: searching for iron-responsive elements. Nucleic Acids Res (2010) 0.93
The interplay of the EIIA(Ntr) component of the nitrogen-related phosphotransferase system (PTS(Ntr)) of Pseudomonas putida with pyruvate dehydrogenase. Biochim Biophys Acta (2011) 0.92
Stable implantation of orthogonal sensor circuits in Gram-negative bacteria for environmental release. Environ Microbiol (2008) 0.92
Association of dnt genes of Burkholderia sp. DNT with the substrate-blind regulator DntR draws the evolutionary itinerary of 2,4-dinitrotoluene biodegradation. Mol Microbiol (2011) 0.90
Metabolic and regulatory rearrangements underlying glycerol metabolism in Pseudomonas putida KT2440. Environ Microbiol (2013) 0.90
The ancestral role of the phosphoenolpyruvate-carbohydrate phosphotransferase system (PTS) as exposed by comparative genomics. Res Microbiol (2007) 0.90
Engineering input/output nodes in prokaryotic regulatory circuits. FEMS Microbiol Rev (2010) 0.90
Functional coexistence of twin arsenic resistance systems in Pseudomonas putida KT2440. Environ Microbiol (2014) 0.89
CoGenT++: an extensive and extensible data environment for computational genomics. Bioinformatics (2005) 0.89
Surveying biotransformations with à la carte genetic traps: translating dehydrochlorination of lindane (gamma-hexachlorocyclohexane) into lacZ-based phenotypes. Environ Microbiol (2006) 0.89
Testing the limits of biological tolerance to arsenic in a fungus isolated from the River Tinto. Environ Microbiol (2003) 0.89
Accumulation of inorganic polyphosphate enables stress endurance and catalytic vigour in Pseudomonas putida KT2440. Microb Cell Fact (2013) 0.89
Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida. Environ Microbiol (2012) 0.89
Subtractive hybridization reveals a high genetic diversity in the fish pathogen Photobacterium damselae subsp. piscicida: evidence of a SXT-like element. Microbiology (2005) 0.88
Fructose 1-phosphate is the preferred effector of the metabolic regulator Cra of Pseudomonas putida. J Biol Chem (2011) 0.86
Freeing Pseudomonas putida KT2440 of its proviral load strengthens endurance to environmental stresses. Environ Microbiol (2014) 0.85
Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors. J Biotechnol (2012) 0.85
Transposon-based and plasmid-based genetic tools for editing genomes of gram-negative bacteria. Methods Mol Biol (2012) 0.85
Regulatory exaptation of the catabolite repression protein (Crp)-cAMP system in Pseudomonas putida. Environ Microbiol (2010) 0.85
Retraction. Science (2010) 0.84
Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloroprop-1-ene metabolism by Pseudomonas pavonaceae. Philos Trans R Soc Lond B Biol Sci (2013) 0.84
The m-xylene biodegradation capacity of Pseudomonas putida mt-2 is submitted to adaptation to abiotic stresses: evidence from expression profiling of xyl genes. Environ Microbiol (2006) 0.84
Synthetic biology approaches to improve biocatalyst identification in metagenomic library screening. Microb Biotechnol (2014) 0.84
The role of thiol species in the hypertolerance of Aspergillus sp. P37 to arsenic. J Biol Chem (2004) 0.83
Growth-dependent phosphorylation of the PtsN (EIINtr) protein of Pseudomonas putida. J Biol Chem (2007) 0.83
Implementing an OR-NOT (ORN) logic gate with components of the SOS regulatory network of Escherichia coli. Mol Biosyst (2011) 0.82
Sigma 54 levels and physiological control of the Pseudomonas putida Pu promoter. J Bacteriol (2003) 0.82
Systemic approaches to biodegradation. FEMS Microbiol Rev (2008) 0.82
The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene. BMC Syst Biol (2011) 0.82
Endogenous stress caused by faulty oxidation reactions fosters evolution of 2,4-dinitrotoluene-degrading bacteria. PLoS Genet (2013) 0.82
The Standard European Vector Architecture (SEVA) plasmid toolkit. Methods Mol Biol (2014) 0.82
Transcriptional wiring of the TOL plasmid regulatory network to its host involves the submission of the sigma54-promoter Pu to the response regulator PprA. Mol Microbiol (2008) 0.82
Cooperative amino acid changes shift the response of the σ⁵⁴-dependent regulator XylR from natural m-xylene towards xenobiotic 2,4-dinitrotoluene. Mol Microbiol (2011) 0.82
The grammar of (micro)biological diversity. Environ Microbiol (2002) 0.81
The Crp regulator of Pseudomonas putida: evidence of an unusually high affinity for its physiological effector, cAMP. Environ Microbiol (2011) 0.81
Linking genes to microbial growth kinetics: an integrated biochemical systems engineering approach. Metab Eng (2011) 0.81
Monitoring biodegradative enzymes with nanobodies raised in Camelus dromedarius with mixtures of catabolic proteins. Environ Microbiol (2011) 0.81
Autotransporters as scaffolds for novel bacterial adhesins: surface properties of Escherichia coli cells displaying Jun/Fos dimerization domains. J Bacteriol (2003) 0.81
The private life of environmental bacteria: pollutant biodegradation at the single cell level. Environ Microbiol (2014) 0.81
In situ detection of aromatic compounds with biosensor Pseudomonas putida cells preserved and delivered to soil in water-soluble gelatin capsules. Anal Bioanal Chem (2010) 0.81
A composite feed-forward loop I4-FFL involving IHF and Crc stabilizes expression of the XylR regulator of Pseudomonas putida mt-2 from growth phase perturbations. Mol Biosyst (2011) 0.80
Non-disruptive release of Pseudomonas putida proteins by in situ electric breakdown of intact cells. J Microbiol Methods (2007) 0.80
Cra regulates the cross-talk between the two branches of the phosphoenolpyruvate : phosphotransferase system of Pseudomonas putida. Environ Microbiol (2012) 0.80
Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes. Environ Microbiol Rep (2013) 0.80
Expanding the boolean logic of the prokaryotic transcription factor XylR by functionalization of permissive sites with a protease-target sequence. ACS Synth Biol (2013) 0.80
Broadening the signal specificity of prokaryotic promoters by modifying cis-regulatory elements associated with a single transcription factor. Mol Biosyst (2012) 0.80
Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m-xylene. Mol Microbiol (2012) 0.79
Inferring the genetic network of m-xylene metabolism through expression profiling of the xyl genes of Pseudomonas putida mt-2. Mol Microbiol (2005) 0.79
Engineering whole-cell biosensors with no antibiotic markers for monitoring aromatic compounds in the environment. Methods Mol Biol (2012) 0.79
The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid. Environ Microbiol (2010) 0.79
The differential response of the Pben promoter of Pseudomonas putida mt-2 to BenR and XylS prevents metabolic conflicts in m-xylene biodegradation. Environ Microbiol (2014) 0.78
Kinetics of stabilised Criegee intermediates derived from alkene ozonolysis: reactions with SO2, H2O and decomposition under boundary layer conditions. Phys Chem Chem Phys (2015) 0.78
Quantitative, non-disruptive monitoring of transcription in single cells with a broad-host range GFP-luxCDABE dual reporter system. PLoS One (2012) 0.78
The IHF regulon of exponentially growing Pseudomonas putida cells. Environ Microbiol (2012) 0.78