Modulation of CRISPR locus transcription by the repeat-binding protein Cbp1 in Sulfolobus.

PubWeight™: 1.16‹?› | Rank: Top 10%

🔗 View Article (PMC 3315313)

Published in Nucleic Acids Res on December 01, 2011

Authors

Ling Deng1, Chandra S Kenchappa, Xu Peng, Qunxin She, Roger A Garrett

Author Affiliations

1: Archaea Centre, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200N Copenhagen K, Denmark.

Articles citing this

Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidis. Mol Cell (2013) 2.52

Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms. Mol Microbiol (2012) 2.02

Protospacer recognition motifs: mixed identities and functional diversity. RNA Biol (2013) 2.00

Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus. Mol Cell (2013) 1.96

Classification and evolution of type II CRISPR-Cas systems. Nucleic Acids Res (2014) 1.91

Comparative genomics of defense systems in archaea and bacteria. Nucleic Acids Res (2013) 1.82

Function and regulation of clustered regularly interspaced short palindromic repeats (CRISPR) / CRISPR associated (Cas) systems. Viruses (2012) 1.27

The CRISPR-associated gene cas2 of Legionella pneumophila is required for intracellular infection of amoebae. MBio (2013) 1.18

CRISPR adaptive immune systems of Archaea. RNA Biol (2014) 1.18

Essential requirements for the detection and degradation of invaders by the Haloferax volcanii CRISPR/Cas system I-B. RNA Biol (2013) 1.01

Unexpectedly broad target recognition of the CRISPR-mediated virus defence system in the archaeon Sulfolobus solfataricus. Nucleic Acids Res (2013) 0.98

Genetic determinants of PAM-dependent DNA targeting and pre-crRNA processing in Sulfolobus islandicus. RNA Biol (2013) 0.96

Novel insights into gene regulation of the rudivirus SIRV2 infecting Sulfolobus cells. RNA Biol (2013) 0.95

Transcriptional regulator-mediated activation of adaptation genes triggers CRISPR de novo spacer acquisition. Nucleic Acids Res (2015) 0.94

Harnessing Type I and Type III CRISPR-Cas systems for genome editing. Nucleic Acids Res (2015) 0.91

Haloarcula hispanica CRISPR authenticates PAM of a target sequence to prime discriminative adaptation. Nucleic Acids Res (2014) 0.89

CRISPR-mediated defense mechanisms in the hyperthermophilic archaeal genus Sulfolobus. RNA Biol (2013) 0.87

CRISPR-Cas Adaptive Immune Systems of the Sulfolobales: Unravelling Their Complexity and Diversity. Life (Basel) (2015) 0.87

Comparative analysis ofCas6b processing and CRISPR RNA stability. RNA Biol (2013) 0.83

The Adaptive Immune System of Haloferax volcanii. Life (Basel) (2015) 0.80

Solution properties of the archaeal CRISPR DNA repeat-binding homeodomain protein Cbp2. Nucleic Acids Res (2013) 0.79

Major and minor crRNA annealing sites facilitate low stringency DNA protospacer binding prior to Type I-A CRISPR-Cas interference in Sulfolobus. RNA Biol (2016) 0.76

Not all predicted CRISPR-Cas systems are equal: isolated cas genes and classes of CRISPR like elements. BMC Bioinformatics (2017) 0.75

Articles cited by this

Small CRISPR RNAs guide antiviral defense in prokaryotes. Science (2008) 17.79

CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature (2011) 17.38

Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol (2011) 17.11

CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science (2008) 11.82

CRISPR-based adaptive immune systems. Curr Opin Microbiol (2011) 8.07

Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev (2008) 7.09

Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus. Proc Natl Acad Sci U S A (2002) 7.04

Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus. J Bacteriol (2007) 7.00

A putative viral defence mechanism in archaeal cells. Archaea (2006) 4.84

Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus. Mol Microbiol (2005) 4.52

Prokaryotic silencing (psi)RNAs in Pyrococcus furiosus. RNA (2008) 4.46

Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol Microbiol (2010) 3.81

Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers. Mol Microbiol (2010) 3.77

Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage. Structure (2011) 3.58

A single-base resolution map of an archaeal transcriptome. Genome Res (2009) 3.42

CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties. Mol Microbiol (2009) 3.37

Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes. J Bacteriol (2003) 3.07

Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE). J Biol Chem (2011) 2.86

Viruses of the Archaea: a unifying view. Nat Rev Microbiol (2006) 2.61

H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO. Mol Microbiol (2010) 2.55

In vivo activity of CRISPR-mediated virus defence in a hyperthermophilic archaeon. Mol Microbiol (2011) 2.35

Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism. Biochem Soc Trans (2009) 2.01

Genomic comparison of archaeal conjugative plasmids from Sulfolobus. Archaea (2004) 1.93

CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats. Nucleic Acids Res (2008) 1.89

Divergent transcriptional and translational signals in Archaea. Environ Microbiol (2005) 1.76

Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus. Extremophiles (2009) 1.75

CRISPR-based immune systems of the Sulfolobales: complexity and diversity. Biochem Soc Trans (2011) 1.66

CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems. Res Microbiol (2010) 1.55

Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus-host interaction studies. J Bacteriol (2011) 1.45

Archaeal CRISPR-based immune systems: exchangeable functional modules. Trends Microbiol (2011) 1.41

Transcriptome analysis of infection of the archaeon Sulfolobus solfataricus with Sulfolobus turreted icosahedral virus. J Virol (2008) 1.37

Structural and functional studies of archaeal viruses. J Biol Chem (2009) 1.32

Stability of mRNA in the hyperthermophilic archaeon Sulfolobus solfataricus. RNA (2002) 1.25

An upstream activation element exerting differential transcriptional activation on an archaeal promoter. Mol Microbiol (2009) 1.24

The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C. Archaea (2007) 1.22

Archaeal intrinsic transcription termination in vivo. J Bacteriol (2009) 1.15

Genes with internal repeats require the THO complex for transcription. Proc Natl Acad Sci U S A (2006) 1.11

The CRISPR/Cas immune system is an operon regulated by LeuO, H-NS, and leucine-responsive regulatory protein in Salmonella enterica serovar Typhi. J Bacteriol (2011) 1.06

Phage encoded H-NS: a potential achilles heel in the bacterial defence system. PLoS One (2011) 0.98

Macromolecular fingerprinting of sulfolobus species in biofilm: a transcriptomic and proteomic approach combined with spectroscopic analysis. J Proteome Res (2011) 0.87

Dangerous weapons: a cautionary tale of CRISPR defence. Mol Microbiol (2011) 0.77

Articles by these authors

A putative viral defence mechanism in archaeal cells. Archaea (2006) 4.84

Dynamic properties of the Sulfolobus CRISPR/Cas and CRISPR/Cmr systems when challenged with vector-borne viral and plasmid genes and protospacers. Mol Microbiol (2010) 3.77

CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties. Mol Microbiol (2009) 3.37

Intergenic variants of HBS1L-MYB are responsible for a major quantitative trait locus on chromosome 6q23 influencing fetal hemoglobin levels in adults. Proc Natl Acad Sci U S A (2007) 3.10

Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes. J Bacteriol (2003) 3.07

Suppression of autophagy by FIP200 deletion inhibits mammary tumorigenesis. Genes Dev (2011) 3.05

Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE). J Biol Chem (2011) 2.86

Conditional knockout of focal adhesion kinase in endothelial cells reveals its role in angiogenesis and vascular development in late embryogenesis. J Cell Biol (2005) 2.75

Viruses of the Archaea: a unifying view. Nat Rev Microbiol (2006) 2.61

The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. J Bacteriol (2005) 2.31

Role of FIP200 in cardiac and liver development and its regulation of TNFalpha and TSC-mTOR signaling pathways. J Cell Biol (2006) 2.12

Cool-1 functions as an essential regulatory node for EGF receptor- and Src-mediated cell growth. Nat Cell Biol (2006) 2.04

Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life. Virus Res (2006) 2.02

Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms. Mol Microbiol (2012) 2.02

Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism. Biochem Soc Trans (2009) 2.01

Protospacer recognition motifs: mixed identities and functional diversity. RNA Biol (2013) 2.00

Genomic comparison of archaeal conjugative plasmids from Sulfolobus. Archaea (2004) 1.93

Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux. Plasmid (2008) 1.87

Divergent transcriptional and translational signals in Archaea. Environ Microbiol (2005) 1.76

Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus. Extremophiles (2009) 1.75

The Scottish Structural Proteomics Facility: targets, methods and outputs. J Struct Funct Genomics (2010) 1.66

CRISPR-based immune systems of the Sulfolobales: complexity and diversity. Biochem Soc Trans (2011) 1.66

Structural and genomic properties of the hyperthermophilic archaeal virus ATV with an extracellular stage of the reproductive cycle. J Mol Biol (2006) 1.62

A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus. Mol Microbiol (2013) 1.58

AFV1, a novel virus infecting hyperthermophilic archaea of the genus acidianus. Virology (2003) 1.56

CRISPR/Cas and Cmr modules, mobility and evolution of adaptive immune systems. Res Microbiol (2010) 1.55

Mobile elements in archaeal genomes. FEMS Microbiol Lett (2002) 1.51

Systematic deletion analysis of fission yeast protein kinases. Eukaryot Cell (2005) 1.51

Virology: independent virus development outside a host. Nature (2005) 1.50

Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus-host interaction studies. J Bacteriol (2011) 1.45

Role of kinase-independent and -dependent functions of FAK in endothelial cell survival and barrier function during embryonic development. J Cell Biol (2010) 1.44

Neural-specific deletion of FIP200 leads to cerebellar degeneration caused by increased neuronal death and axon degeneration. J Biol Chem (2009) 1.38

Mechanism of cell cycle regulation by FIP200 in human breast cancer cells. Cancer Res (2005) 1.36

Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism. Environ Microbiol (2009) 1.27

Mammary epithelial-specific deletion of the focal adhesion kinase gene leads to severe lobulo-alveolar hypoplasia and secretory immaturity of the murine mammary gland. J Biol Chem (2007) 1.26

Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus: SSV1 and SSV2. Res Microbiol (2003) 1.26

Sulfolobus tengchongensis spindle-shaped virus STSV1: virus-host interactions and genomic features. J Virol (2005) 1.26

Mutations and rearrangements in the genome of Sulfolobus solfataricus P2. J Bacteriol (2006) 1.25

An upstream activation element exerting differential transcriptional activation on an archaeal promoter. Mol Microbiol (2009) 1.24

Stygiolobus rod-shaped virus and the interplay of crenarchaeal rudiviruses with the CRISPR antiviral system. J Bacteriol (2008) 1.24

Morphology and genome organization of the virus PSV of the hyperthermophilic archaeal genera Pyrobaculum and Thermoproteus: a novel virus family, the Globuloviridae. Virology (2004) 1.23

Adipose subtype-selective recruitment of TLE3 or Prdm16 by PPARγ specifies lipid storage versus thermogenic gene programs. Cell Metab (2013) 1.22

The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C. Archaea (2007) 1.22

Global fitness profiling of fission yeast deletion strains by barcode sequencing. Genome Biol (2010) 1.19

A novel rudivirus, ARV1, of the hyperthermophilic archaeal genus Acidianus. Virology (2005) 1.16

Viruses of hyperthermophilic Crenarchaea. Trends Microbiol (2005) 1.16

The landscape of accessible chromatin in mammalian preimplantation embryos. Nature (2016) 1.13

Revealing the essentiality of multiple archaeal pcna genes using a mutant propagation assay based on an improved knockout method. Microbiology (2010) 1.11

Genetic manipulation in Sulfolobus islandicus and functional analysis of DNA repair genes. Biochem Soc Trans (2013) 1.10

Investigating the role of P311 in the hypertrophic scar. PLoS One (2010) 1.10

Characterization of the Sulfolobus host-SSV2 virus interaction. Extremophiles (2006) 1.09

Modulation of cell cycle-specific gene expressions at the onset of S phase arrest contributes to the robust DNA replication checkpoint response in fission yeast. Mol Biol Cell (2007) 1.08

Differential roles of the C and N termini of Orai1 protein in interacting with stromal interaction molecule 1 (STIM1) for Ca2+ release-activated Ca2+ (CRAC) channel activation. J Biol Chem (2013) 1.06

Inter-viral conflicts that exploit host CRISPR immune systems of Sulfolobus. Mol Microbiol (2014) 1.05

Identification of poly (ADP-ribose) polymerase-1 (PARP-1) as a novel Kruppel-like factor 8-interacting and -regulating protein. J Biol Chem (2011) 1.05

Multiple variants of the archaeal DNA rudivirus SIRV1 in a single host and a novel mechanism of genomic variation. Mol Microbiol (2004) 1.04

Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon. Open Biol (2013) 1.02

Vitamin D receptor activation protects against myocardial reperfusion injury through inhibition of apoptosis and modulation of autophagy. Antioxid Redox Signal (2015) 1.01

Ultrathin two-dimensional MnO2/graphene hybrid nanostructures for high-performance, flexible planar supercapacitors. Nano Lett (2013) 1.01

Mapping genomic hotspots of DNA damage by a single-strand-DNA-compatible and strand-specific ChIP-seq method. Genome Res (2012) 1.01

Two-dimensional vanadyl phosphate ultrathin nanosheets for high energy density and flexible pseudocapacitors. Nat Commun (2013) 1.00

Genomic analysis of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles. Extremophiles (2011) 1.00

Familial relationships in hyperthermo- and acidophilic archaeal viruses. J Virol (2010) 1.00

Krüppel-like factor 8 promotes tumorigenic mammary stem cell induction by targeting miR-146a. Am J Cancer Res (2013) 0.99

Specificity and function of archaeal DNA replication initiator proteins. Cell Rep (2013) 0.99

Conservation of the Type IV secretion system throughout Wolbachia evolution. Biochem Biophys Res Commun (2009) 0.98

Curcumin protects mitochondria from oxidative damage and attenuates apoptosis in cortical neurons. Acta Pharmacol Sin (2004) 0.98

Structure and genome organization of AFV2, a novel archaeal lipothrixvirus with unusual terminal and core structures. J Bacteriol (2005) 0.98

Sulfolobus turreted icosahedral virus c92 protein responsible for the formation of pyramid-like cellular lysis structures. J Virol (2011) 0.98

Both ERK/MAPK and TGF-Beta/Smad signaling pathways play a role in the kidney fibrosis of diabetic mice accelerated by blood glucose fluctuation. J Diabetes Res (2013) 0.97

Development of a simvastatin selection marker for a hyperthermophilic acidophile, Sulfolobus islandicus. Appl Environ Microbiol (2011) 0.97

Activation of the Ran GTPase is subject to growth factor regulation and can give rise to cellular transformation. J Biol Chem (2009) 0.97

Getting the best out of long-wavelength X-rays: de novo chlorine/sulfur SAD phasing of a structural protein from ATV. Acta Crystallogr D Biol Crystallogr (2010) 0.97

Genetic determinants of PAM-dependent DNA targeting and pre-crRNA processing in Sulfolobus islandicus. RNA Biol (2013) 0.96

A synthetic arabinose-inducible promoter confers high levels of recombinant protein expression in hyperthermophilic archaeon Sulfolobus islandicus. Appl Environ Microbiol (2012) 0.96

A dimeric Rep protein initiates replication of a linear archaeal virus genome: implications for the Rep mechanism and viral replication. J Virol (2010) 0.96

Key role of cysteine residues in catalysis and subcellular localization of sulfur oxygenase-reductase of Acidianus tengchongensis. Appl Environ Microbiol (2005) 0.95

Novel insights into gene regulation of the rudivirus SIRV2 infecting Sulfolobus cells. RNA Biol (2013) 0.95

Comparative Metagenomics of Eight Geographically Remote Terrestrial Hot Springs. Microb Ecol (2015) 0.93

Isolation of cardiac myocytes and fibroblasts from neonatal rat pups. Methods Mol Biol (2012) 0.93