Published in J Bacteriol on January 06, 2012
Diverse broad-host-range plasmids from freshwater carry few accessory genes. Appl Environ Microbiol (2013) 0.90
The role of clonal interference in the evolutionary dynamics of plasmid-host adaptation. MBio (2012) 0.86
Host range diversification within the IncP-1 plasmid group. Microbiology (2013) 0.83
Selection affects genes involved in replication during long-term evolution in experimental populations of the bacteriophage φX174. PLoS One (2013) 0.79
Evolved plasmid-host interactions reduce plasmid interference cost. Mol Microbiol (2016) 0.75
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem (1976) 903.81
Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc Natl Acad Sci U S A (1979) 365.71
Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J Bacteriol (1995) 46.37
Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc Natl Acad Sci U S A (1979) 44.75
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol (2006) 40.15
A highly efficient Escherichia coli-based chromosome engineering system adapted for recombinogenic targeting and subcloning of BAC DNA. Genomics (2001) 15.03
Antibacterial resistance worldwide: causes, challenges and responses. Nat Med (2004) 10.46
High-copy-number and low-copy-number plasmid vectors for lacZ alpha-complementation and chloramphenicol- or kanamycin-resistance selection. Gene (1987) 9.16
Trimethoprim R factors in enterobacteria from clinical specimens. J Med Microbiol (1974) 4.75
A Tn7-based broad-range bacterial cloning and expression system. Nat Methods (2005) 4.66
Regions of broad-host-range plasmid RK2 involved in replication and stable maintenance in nine species of gram-negative bacteria. J Bacteriol (1985) 3.93
Tight regulation of unstructured proteins: from transcript synthesis to protein degradation. Science (2008) 3.48
Incompatibility group P plasmids: genetics, evolution, and use in genetic manipulation. Annu Rev Microbiol (1987) 3.47
An improved suicide vector for construction of chromosomal insertion mutations in bacteria. Gene (1992) 3.09
The Population Biology of Bacterial Plasmids: A PRIORI Conditions for the Existence of Conjugationally Transmitted Factors. Genetics (1977) 2.97
Characterization of aquatic bacteria and cloning of genes specifying partial degradation of 2,4-dichlorophenoxyacetic acid. Appl Environ Microbiol (1985) 2.86
An improved Tn7-based system for the single-copy insertion of cloned genes into chromosomes of gram-negative bacteria. Gene (1991) 2.82
P1 plasmid replication: multiple functions of RepA protein at the origin. Proc Natl Acad Sci U S A (1985) 2.32
Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP. J Bacteriol (2001) 2.30
Control of plasmid DNA replication by iterons: no longer paradoxical. Mol Microbiol (2000) 2.03
Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool. FEMS Microbiol Rev (2007) 1.91
Analysis of the trfA region of broad host-range plasmid RK2 by transposon mutagenesis and identification of polypeptide products. J Mol Biol (1984) 1.91
Nucleotide sequence of the trfA gene of broad host-range plasmid RK2. J Mol Biol (1984) 1.82
Positive and negative roles of an initiator protein at an origin of replication. Proc Natl Acad Sci U S A (1986) 1.56
Dynamics of the IncW genetic backbone imply general trends in conjugative plasmid evolution. FEMS Microbiol Rev (2006) 1.55
Genomic organization and genomic structural rearrangements of Sphingobium japonicum UT26, an archetypal γ-hexachlorocyclohexane-degrading bacterium. Enzyme Microb Technol (2011) 1.54
Structural disorder serves as a weak signal for intracellular protein degradation. Proteins (2008) 1.46
The completely sequenced plasmid pEST4011 contains a novel IncP1 backbone and a catabolic transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid degradation. J Bacteriol (2004) 1.39
Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways. Environ Microbiol (2004) 1.37
Spread and survival of promiscuous IncP-1 plasmids. Acta Biochim Pol (2003) 1.34
The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader. PLoS One (2010) 1.31
Genetic diversity among 3-chloroaniline- and aniline-degrading strains of the Comamonadaceae. Appl Environ Microbiol (2001) 1.28
Iteron inhibition of plasmid RK2 replication in vitro: evidence for intermolecular coupling of replication origins as a mechanism for RK2 replication control. Proc Natl Acad Sci U S A (1991) 1.26
The sequence encoding the 43-kilodalton trfA protein is required for efficient replication or maintenance of minimal RK2 replicons in Pseudomonas aeruginosa. Plasmid (1987) 1.20
Broad-host-range properties of plasmid RK2: importance of overlapping genes encoding the plasmid replication initiation protein TrfA. J Bacteriol (1991) 1.20
The replication initiation protein of the broad-host-range plasmid RK2 is activated by the ClpX chaperone. Proc Natl Acad Sci U S A (1997) 1.17
The IncP-1 plasmid backbone adapts to different host bacterial species and evolves through homologous recombination. Nat Commun (2011) 1.16
Plasmids from freshwater environments capable of IncQ retrotransfer are diverse and include pQKH54, a new IncP-1 subgroup archetype. Microbiology (2006) 1.14
Helicase delivery and activation by DnaA and TrfA proteins during the initiation of replication of the broad host range plasmid RK2. J Biol Chem (1997) 1.13
Conjugative plasmids of Neisseria gonorrhoeae. PLoS One (2010) 1.12
Copy-up mutants of the plasmid RK2 replication initiation protein are defective in coupling RK2 replication origins. Proc Natl Acad Sci U S A (1996) 1.09
Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein. ISME J (2010) 1.07
Twenty years of the pPS10 replicon: insights on the molecular mechanism for the activation of DNA replication in iteron-containing bacterial plasmids. Plasmid (2004) 1.06
Oligomeric initiator protein-mediated DNA looping negatively regulates plasmid replication in vitro by preventing origin melting. Mol Cell (2005) 1.02
Biochemical investigations of control of replication initiation of plasmid R6K. J Biol Chem (2003) 1.01
Host growth temperature and a conservative amino acid substitution in the replication protein of pPS10 influence plasmid host range. J Bacteriol (1995) 1.00
The plasmid RK2 initiation protein binds to the origin of replication as a monomer. J Biol Chem (1996) 1.00
Plasmid pBP136 from Bordetella pertussis represents an ancestral form of IncP-1beta plasmids without accessory mobile elements. Microbiology (2006) 0.99
Role of IncP-1β plasmids pWDL7::rfp and pNB8c in chloroaniline catabolism as determined by genomic and functional analyses. Appl Environ Microbiol (2011) 0.95
TrfA dimers play a role in copy-number control of RK2 replication. Gene (1998) 0.94
Comparative genomics of pAKD4, the prototype IncP-1delta plasmid with a complete backbone. Plasmid (2009) 0.94
Cooperative action of Escherichia coli ClpB protein and DnaK chaperone in the activation of a replication initiation protein. J Biol Chem (2002) 0.94
Sequence and analysis of the 46.6-kb plasmid pA1 from Sphingomonas sp. A1 that corresponds to the typical IncP-1beta plasmid backbone without any accessory gene. Plasmid (2006) 0.92
Analysis of nonpolar insertion mutations in the trfA gene of IncP plasmid RK2 which affect its broad-host-range property. Biochim Biophys Acta (1989) 0.91
Replication and partitioning of the broad-host-range plasmid RK2. Plasmid (2010) 0.88
In vivo and in vitro studies of a copy number mutation of the RepA replication protein of plasmid pSC101. J Bacteriol (1993) 0.87
Modulation of pPS10 host range by DnaA. Mol Microbiol (2002) 0.87
Modulation of pPS10 host range by plasmid-encoded RepA initiator protein. J Bacteriol (2003) 0.87
A specific region in the N terminus of a replication initiation protein of plasmid RK2 is required for recruitment of Pseudomonas aeruginosa DnaB helicase to the plasmid origin. J Biol Chem (2003) 0.83
A multifunctional plasmid-encoded replication initiation protein both recruits and positions an active helicase at the replication origin. Proc Natl Acad Sci U S A (2003) 0.83
Species-dependent phenotypes of replication-temperature-sensitive trfA mutants of plasmid RK2: a codon-neutral base substitution stimulates temperature sensitivity by leading to reduced levels of trfA expression. J Bacteriol (1998) 0.83
Conservation of the genetic switch between replication and transfer genes of IncP plasmids but divergence of the replication functions which are major host-range determinants. Plasmid (1996) 0.81
Host-dependent requirement for specific DnaA boxes for plasmid RK2 replication. Mol Microbiol (1999) 0.81
Opposing effects of DNA on proteolysis of a replication initiator. Nucleic Acids Res (2011) 0.81
Conformation of a plasmid replication initiator protein affects its proteolysis by ClpXP system. Protein Sci (2009) 0.80
TrfA-dependent inner membrane-associated plasmid RK2 DNA synthesis and association of TrfA with membranes of different gram-negative hosts. J Bacteriol (2000) 0.78
Cardioprotective effects of cerium oxide nanoparticles in a transgenic murine model of cardiomyopathy. Cardiovasc Res (2006) 2.18
Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants. FEMS Microbiol Ecol (2002) 2.07
Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool. FEMS Microbiol Rev (2007) 1.91
Activation of endoplasmic reticulum stress response during the development of ischemic heart disease. Am J Physiol Heart Circ Physiol (2006) 1.81
Stability of a promiscuous plasmid in different hosts: no guarantee for a long-term relationship. Microbiology (2007) 1.63
Synergistic degradation of linuron by a bacterial consortium and isolation of a single linuron-degrading variovorax strain. Appl Environ Microbiol (2003) 1.37
Predicting plasmid promiscuity based on genomic signature. J Bacteriol (2010) 1.36
Plasmid donor affects host range of promiscuous IncP-1beta plasmid pB10 in an activated-sludge microbial community. Appl Environ Microbiol (2005) 1.32
Selection pressure required for long-term persistence of blaCMY-2-positive IncA/C plasmids. Appl Environ Microbiol (2011) 1.29
Broad-host-range plasmids from agricultural soils have IncP-1 backbones with diverse accessory genes. Appl Environ Microbiol (2011) 1.28
Frequent conjugative transfer accelerates adaptation of a broad-host-range plasmid to an unfavorable Pseudomonas putida host. FEMS Microbiol Ecol (2006) 1.25
Occurrence and phylogenetic diversity of Sphingomonas strains in soils contaminated with polycyclic aromatic hydrocarbons. Appl Environ Microbiol (2004) 1.22
Adaptive plasmid evolution results in host-range expansion of a broad-host-range plasmid. Genetics (2008) 1.22
Spreading antibiotic resistance through spread manure: characteristics of a novel plasmid type with low %G+C content. Environ Microbiol (2008) 1.21
Impact of agricultural practices on the Zea mays L. endophytic community. Appl Environ Microbiol (2004) 1.20
Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes. Nucleic Acids Res (2008) 1.14
Modelling the spatial dynamics of plasmid transfer and persistence. Microbiology (2007) 1.13
Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase. J Bacteriol (2006) 1.11
Bioaugmentation as a tool to protect the structure and function of an activated-sludge microbial community against a 3-chloroaniline shock load. Appl Environ Microbiol (2003) 1.11
Horizontal gene transfer and microbial adaptation to xenobiotics: new types of mobile genetic elements and lessons from ecological studies. Trends Microbiol (2004) 1.11
Occurrence and community composition of fast-growing Mycobacterium in soils contaminated with polycyclic aromatic hydrocarbons. FEMS Microbiol Ecol (2005) 1.08
Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein. ISME J (2010) 1.07
Comparison of correspondence analysis methods for synonymous codon usage in bacteria. DNA Res (2008) 1.06
The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution. Plasmid (2012) 1.05
Spatial structure and nutrients promote invasion of IncP-1 plasmids in bacterial populations. ISME J (2008) 1.05
The population biology of bacterial plasmids: a hidden Markov model approach. Genetics (2006) 1.05
His(20) provides the sole functionally significant side chain in the essential TonB transmembrane domain. J Bacteriol (2007) 1.02
Plasmids captured in C. metallidurans CH34: defining the PromA family of broad-host-range plasmids. Antonie Van Leeuwenhoek (2009) 1.01
Inferring the evolutionary history of IncP-1 plasmids despite incongruence among backbone gene trees. Mol Biol Evol (2012) 1.00
Plasmid pBP136 from Bordetella pertussis represents an ancestral form of IncP-1beta plasmids without accessory mobile elements. Microbiology (2006) 0.99
Bioaugmenting bioreactors for the continuous removal of 3-chloroaniline by a slow release approach. Environ Sci Technol (2002) 0.97
Diversity of transconjugants that acquired plasmid pJP4 or pEMT1 after inoculation of a donor strain in the A- and B-horizon of an agricultural soil and description of Burkholderia hospita sp. nov. and Burkholderia terricola sp. nov. Syst Appl Microbiol (2002) 0.96
Comparative genomics of pAKD4, the prototype IncP-1delta plasmid with a complete backbone. Plasmid (2009) 0.94
Increased transfer of a multidrug resistance plasmid in Escherichia coli biofilms at the air-liquid interface. Appl Environ Microbiol (2011) 0.92
Alternative primer sets for PCR detection of genotypes involved in bacterial aerobic BTEX degradation: distribution of the genes in BTEX degrading isolates and in subsurface soils of a BTEX contaminated industrial site. J Microbiol Methods (2005) 0.92
Diverse broad-host-range plasmids from freshwater carry few accessory genes. Appl Environ Microbiol (2013) 0.90
Replication functions of new broad host range plasmids isolated from polluted soils. Res Microbiol (2003) 0.89
PCR-DGGE method to assess the diversity of BTEX mono-oxygenase genes at contaminated sites. FEMS Microbiol Ecol (2006) 0.87
Strain-specific transfer of antibiotic resistance from an environmental plasmid to foodborne pathogens. J Biomed Biotechnol (2012) 0.87
The role of clonal interference in the evolutionary dynamics of plasmid-host adaptation. MBio (2012) 0.86
Region-specific insertion of transposons in combination with selection for high plasmid transferability and stability accounts for the structural similarity of IncP-1 plasmids. J Bacteriol (2007) 0.85
Diversity of 3-chloroaniline and 3,4-dichloroaniline degrading bacteria isolated from three different soils and involvement of their plasmids in chloroaniline degradation. FEMS Microbiol Ecol (2002) 0.85
On the meaning and estimation of plasmid transfer rates for surface-associated and well-mixed bacterial populations. J Theor Biol (2011) 0.85
Homoserine and asparagine are host signals that trigger in planta expression of a pathogenesis gene in Nectria haematococca. Proc Natl Acad Sci U S A (2005) 0.84
Accounting for mating pair formation in plasmid population dynamics. J Theor Biol (2009) 0.84
Dynamics of an oligotrophic bacterial aquifer community during contact with a groundwater plume contaminated with benzene, toluene, ethylbenzene, and xylenes: an in situ mesocosm study. Appl Environ Microbiol (2005) 0.84
Modeling the impact of periodic bottlenecks, unidirectional mutation, and observational error in experimental evolution. J Math Biol (2004) 0.83
Effect of long-term herbicide applications on the bacterial community structure and function in an agricultural soil. FEMS Microbiol Ecol (2003) 0.83
Host range diversification within the IncP-1 plasmid group. Microbiology (2013) 0.83
Invasion of E. coli biofilms by antibiotic resistance plasmids. Plasmid (2013) 0.82
IncP-1β plasmids of Comamonas sp. and Delftia sp. strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violet. Microbiology (2012) 0.81
Sequencing and comparative analysis of IncP-1α antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions. J Biotechnol (2010) 0.81
Long-term effects of mineral versus organic fertilizers on activity and structure of the methanotrophic community in agricultural soils. Environ Microbiol (2003) 0.79
Draft Genome Sequence of Pseudomonas moraviensis R28-S. Genome Announc (2014) 0.79
Dual reporter system for in situ detection of plasmid transfer under aerobic and anaerobic conditions. Appl Environ Microbiol (2010) 0.78
Comparative genomics of IncP-1ε plasmids from water environments reveals diverse and unique accessory genetic elements. Plasmid (2013) 0.77
Cointegrate-resolution of toluene-catabolic transposon Tn4651: determination of crossover site and the segment required for full resolution activity. Plasmid (2012) 0.77
Special issue of Current Opinion in Microbiology, focused on 'Ecology and Industrial Microbiology'. Curr Opin Microbiol (2011) 0.76
Plasmid Detection, Characterization, and Ecology. Microbiol Spectr (2015) 0.75
[Degradative mobile genetic elements (MGEs) and their potential use in MGE-mediated biodegradation]. Ying Yong Sheng Tai Xue Bao (2011) 0.75