Published in BMC Plant Biol on January 26, 2012
Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data. BMC Genomics (2012) 1.54
Sequence-based mapping of the polyploid wheat genome. G3 (Bethesda) (2013) 1.29
Genotyping-by-Sequencing in Plants. Biology (Basel) (2012) 1.25
Separating homeologs by phasing in the tetraploid wheat transcriptome. Genome Biol (2013) 1.23
User guide for mapping-by-sequencing in Arabidopsis. Genome Biol (2013) 1.10
Identification and independent validation of a stable yield and thousand grain weight QTL on chromosome 6A of hexaploid wheat (Triticum aestivum L.). BMC Plant Biol (2014) 1.06
Field pathogenomics reveals the emergence of a diverse wheat yellow rust population. Genome Biol (2015) 1.05
Emerging Genomic Tools for Legume Breeding: Current Status and Future Prospects. Front Plant Sci (2016) 0.99
SNP Discovery for mapping alien introgressions in wheat. BMC Genomics (2014) 0.96
Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish. BMC Genomics (2013) 0.93
Mapping QTLs for Salt Tolerance in Rice (Oryza sativa L.) by Bulked Segregant Analysis of Recombinant Inbred Lines Using 50K SNP Chip. PLoS One (2016) 0.93
RNA-seq based SNPs in some agronomically important oleiferous lines of Brassica rapa and their use for genome-wide linkage mapping and specific-region fine mapping. BMC Genomics (2013) 0.92
Dual RNA-seq transcriptional analysis of wheat roots colonized by Azospirillum brasilense reveals up-regulation of nutrient acquisition and cell cycle genes. BMC Genomics (2014) 0.90
Strategies for transferring resistance into wheat: from wide crosses to GM cassettes. Front Plant Sci (2014) 0.90
Biofortification of wheat grain with iron and zinc: integrating novel genomic resources and knowledge from model crops. Front Plant Sci (2014) 0.90
Identifying the genome-wide sequence variations and developing new molecular markers for genetics research by re-sequencing a Landrace cultivar of foxtail millet. PLoS One (2013) 0.90
DNA fingerprinting in botany: past, present, future. Investig Genet (2014) 0.89
BSTA: a targeted approach combines bulked segregant analysis with next- generation sequencing and de novo transcriptome assembly for SNP discovery in sunflower. BMC Genomics (2013) 0.88
SNP discovery by illumina-based transcriptome sequencing of the olive and the genetic characterization of Turkish olive genotypes revealed by AFLP, SSR and SNP markers. PLoS One (2013) 0.86
A Kelch Domain-Containing F-Box Coding Gene Negatively Regulates Flavonoid Accumulation in Muskmelon. Plant Physiol (2015) 0.85
Identification of genome-wide single nucleotide polymorphisms in allopolyploid crop Brassica napus. BMC Genomics (2013) 0.85
Bulked sample analysis in genetics, genomics and crop improvement. Plant Biotechnol J (2016) 0.84
Mutation Scanning in Wheat by Exon Capture and Next-Generation Sequencing. PLoS One (2015) 0.84
A SNP-Based Molecular Barcode for Characterization of Common Wheat. PLoS One (2016) 0.83
Mining candidate genes associated with powdery mildew resistance in cucumber via super-BSA by specific length amplified fragment (SLAF) sequencing. BMC Genomics (2015) 0.83
Genetically based location from triploid populations and gene ontology of a 3.3-mb genome region linked to Alternaria brown spot resistance in citrus reveal clusters of resistance genes. PLoS One (2013) 0.83
A splice acceptor site mutation in TaGW2-A1 increases thousand grain weight in tetraploid and hexaploid wheat through wider and longer grains. Theor Appl Genet (2016) 0.82
Comparative quantitative trait loci for silique length and seed weight in Brassica napus. Sci Rep (2015) 0.82
Application of in silico bulked segregant analysis for rapid development of markers linked to Bean common mosaic virus resistance in common bean. BMC Genomics (2014) 0.82
Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides. Sci Rep (2015) 0.82
Combining Next Generation Sequencing with Bulked Segregant Analysis to Fine Map a Stem Moisture Locus in Sorghum (Sorghum bicolor L. Moench). PLoS One (2015) 0.81
Evaluation of assembly strategies using RNA-seq data associated with grain development of wheat (Triticum aestivum L.). PLoS One (2013) 0.81
Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication. BMC Bioinformatics (2013) 0.81
De Novo Assembled Wheat Transcriptomes Delineate Differentially Expressed Host Genes in Response to Leaf Rust Infection. PLoS One (2016) 0.80
Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis. G3 (Bethesda) (2015) 0.80
Transcriptomic analysis of cut tree peony with glucose supply using the RNA-Seq technique. Plant Cell Rep (2013) 0.80
Transcriptomic Analysis of Paeonia delavayi Wild Population Flowers to Identify Differentially Expressed Genes Involved in Purple-Red and Yellow Petal Pigmentation. PLoS One (2015) 0.79
Comparison of SNP and CAPS markers application in genetic research in wheat and barley. BMC Plant Biol (2016) 0.78
DHPLC technology for high-throughput detection of mutations in a durum wheat TILLING population. BMC Genet (2016) 0.78
Mapping the Flavor Contributing Traits on "Fengwei Melon" (Cucumis melo L.) Chromosomes Using Parent Resequencing and Super Bulked-Segregant Analysis. PLoS One (2016) 0.77
A genome scan for quantitative trait loci associated with Vibrio anguillarum infection resistance in Japanese flounder (Paralichthys olivaceus) by bulked segregant analysis. Mar Biotechnol (NY) (2014) 0.77
Application of next-generation sequencing technology to study genetic diversity and identify unique SNP markers in bread wheat from Kazakhstan. BMC Plant Biol (2014) 0.77
Genetic mapping of the rice resistance-breaking gene of the brown planthopper Nilaparvata lugens. Proc Biol Sci (2014) 0.77
EXPLoRA-web: linkage analysis of quantitative trait loci using bulk segregant analysis. Nucleic Acids Res (2016) 0.77
Development of genetic markers in Eucalyptus species by target enrichment and exome sequencing. PLoS One (2015) 0.76
Identification of Genome-Wide Variants and Discovery of Variants Associated with Brassica rapa Clubroot Resistance Gene Rcr1 through Bulked Segregant RNA Sequencing. PLoS One (2016) 0.76
Next-Generation Sequencing from Bulked-Segregant Analysis Accelerates the Simultaneous Identification of Two Qualitative Genes in Soybean. Front Plant Sci (2017) 0.76
Development and utilization of a new chemically-induced soybean library with a high mutation density. J Integr Plant Biol (2016) 0.75
Identification of BnaYUCCA6 as a candidate gene for branch angle in Brassica napus by QTL-seq. Sci Rep (2016) 0.75
Transcriptome Analysis for Abnormal Spike Development of the Wheat Mutant dms. PLoS One (2016) 0.75
Mapping-by-sequencing in complex polyploid genomes using genic sequence capture: a case study to map yellow rust resistance in hexaploid wheat. Plant J (2016) 0.75
De Novo Sequencing and Characterization of the Transcriptome of Dwarf Polish Wheat (Triticum polonicum L.). Int J Genomics (2016) 0.75
SNP Marker Discovery in Pima Cotton (Gossypium barbadense L.) Leaf Transcriptomes. Genomics Insights (2016) 0.75
Fine-Mapping the Branching Habit Trait in Cultivated Peanut by Combining Bulked Segregant Analysis and High-Throughput Sequencing. Front Plant Sci (2017) 0.75
Indel-seq: a fast forward genetics approach for identification of trait associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan). Plant Biotechnol J (2016) 0.75
A Population of Deletion Mutants and an Integrated Mapping and Exome-seq Pipeline for Gene Discovery in Maize. G3 (Bethesda) (2016) 0.75
Fast-forward genetics by radiation hybrids to saturate the locus regulating nuclear-cytoplasmic compatibility in Triticum. Plant Biotechnol J (2016) 0.75
SNP Mining in Functional Genes from Nonmodel Species by Next-Generation Sequencing: A Case of Flowering, Pre-Harvest Sprouting, and Dehydration Resistant Genes in Wheat. Biomed Res Int (2016) 0.75
Cloning and Characterization of TaTGW-7A Gene Associated with Grain Weight in Wheat via SLAF-seq-BSA. Front Plant Sci (2016) 0.75
RNA-Seq Analysis Provides the First Insights into the Phylogenetic Relationship and Interspecific Variation between Agropyron cristatum and Wheat. Front Plant Sci (2017) 0.75
Six-rowed spike 3 (VRS3) is a histone demethylase that controls lateral spikelet development in barley. Plant Physiol (2017) 0.75
Bulked Segregant RNA-seq Reveals Differential Expression and SNPs of Candidate Genes Associated with Waterlogging Tolerance in Maize. Front Plant Sci (2017) 0.75
Functional natural allelic variants of flavonoid 3',5'-hydroxylase gene governing catechin traits in tea plant and its relatives. Planta (2016) 0.75
Mapping stripe rust resistance gene YrZH22 in Chinese wheat cultivar Zhoumai 22 by bulked segregant RNA-Seq (BSR-Seq) and comparative genomics analyses. Theor Appl Genet (2017) 0.75
Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res (2008) 157.44
Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods (2008) 126.81
RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet (2009) 58.77
A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science (2002) 42.78
Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics (1988) 27.63
Genome-wide in situ exon capture for selective resequencing. Nat Genet (2007) 19.97
The Sorghum bicolor genome and the diversification of grasses. Nature (2009) 14.62
Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc Natl Acad Sci U S A (1991) 13.51
Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature (2010) 9.52
A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science (2006) 5.13
SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nat Methods (2009) 4.01
A putative ABC transporter confers durable resistance to multiple fungal pathogens in wheat. Science (2009) 3.85
Genome size and the proportion of repeated nucleotide sequence DNA in plants. Biochem Genet (1974) 3.66
Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing. Plant Biotechnol J (2009) 3.22
Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell (2011) 3.03
Aspects of coverage in medical DNA sequencing. BMC Bioinformatics (2008) 2.60
Next-generation mapping of Arabidopsis genes. Plant J (2011) 2.39
Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.). Plant Biotechnol J (2011) 2.13
Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing. Nat Biotechnol (2011) 2.12
Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell (2011) 1.98
Construction and characterization of a half million clone BAC library of durum wheat ( Triticum turgidum ssp. durum). Theor Appl Genet (2003) 1.92
The high grain protein content gene Gpc-B1 accelerates senescence and has pleiotropic effects on protein content in wheat. J Exp Bot (2006) 1.85
Molecular characterization of a diagnostic DNA marker for domesticated tetraploid wheat provides evidence for gene flow from wild tetraploid wheat to hexaploid wheat. Mol Biol Evol (2006) 1.78
Microcolinearity between a 2-cM region encompassing the grain protein content locus Gpc-6B1 on wheat chromosome 6B and a 350-kb region on rice chromosome 2. Funct Integr Genomics (2004) 1.67
Targeted analysis of nucleotide and copy number variation by exon capture in allotetraploid wheat genome. Genome Biol (2011) 1.54
Fast-forward genetics enabled by new sequencing technologies. Trends Plant Sci (2011) 1.48
Precise mapping of a locus affecting grain protein content in durum wheat. Theor Appl Genet (2003) 1.45
Physical map of the wheat high-grain protein content gene Gpc-B1 and development of a high-throughput molecular marker. New Phytol (2006) 1.40
High-density genetic map of durum wheat x wild emmer wheat based on SSR and DArT markers. Theor Appl Genet (2008) 1.35
Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence. BMC Genomics (2011) 1.33
High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.). Theor Appl Genet (2011) 1.31
Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology. BMC Genomics (2011) 1.29
Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS. Plant Biotechnol J (2011) 1.21
High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing. Genetics (2009) 1.19
Gene space dynamics during the evolution of Aegilops tauschii, Brachypodium distachyon, Oryza sativa, and Sorghum bicolor genomes. Mol Biol Evol (2011) 1.14
Fine scale genetic and physical mapping using interstitial deletion mutants of Lr34 /Yr18: a disease resistance locus effective against multiple pathogens in wheat. Theor Appl Genet (2007) 1.11
Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach. BMC Genomics (2011) 1.10
Identification of a major QTL controlling the content of B-type starch granules in Aegilops. J Exp Bot (2011) 0.95
Development of simple sequence repeat markers specific for the Lr34 resistance region of wheat using sequence information from rice and Aegilops tauschii. Theor Appl Genet (2006) 0.95
Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources. BMC Genomics (2010) 0.94
Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing. Plant Biotechnol J (2009) 3.22
A kinase-START gene confers temperature-dependent resistance to wheat stripe rust. Science (2009) 2.76
High-resolution transcriptional analysis of the regulatory influence of cell-to-cell signalling reveals novel genes that contribute to Xanthomonas phytopathogenesis. Mol Microbiol (2013) 1.68
Microcolinearity between a 2-cM region encompassing the grain protein content locus Gpc-6B1 on wheat chromosome 6B and a 350-kb region on rice chromosome 2. Funct Integr Genomics (2004) 1.67
KLUH/CYP78A5-dependent growth signaling coordinates floral organ growth in Arabidopsis. Curr Biol (2010) 1.61
Physical map of the wheat high-grain protein content gene Gpc-B1 and development of a high-throughput molecular marker. New Phytol (2006) 1.40
Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors. BMC Genomics (2013) 1.37
Wheat (Triticum aestivum) NAM proteins regulate the translocation of iron, zinc, and nitrogen compounds from vegetative tissues to grain. J Exp Bot (2009) 1.34
Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence. BMC Genomics (2011) 1.33
Discovery of rare mutations in populations: TILLING by sequencing. Plant Physiol (2011) 1.32
Plant sulfate assimilation genes: redundancy versus specialization. Plant Cell Rep (2009) 1.27
Separating homeologs by phasing in the tetraploid wheat transcriptome. Genome Biol (2013) 1.23
Genes of primary sulfate assimilation are part of the glucosinolate biosynthetic network in Arabidopsis thaliana. Plant J (2009) 1.20
Tissue-specific whole transcriptome sequencing in castor, directed at understanding triacylglycerol lipid biosynthetic pathways. PLoS One (2012) 1.08
Down-regulation of four putative arabinoxylan feruloyl transferase genes from family PF02458 reduces ester-linked ferulate content in rice cell walls. Planta (2009) 1.07
TILLING in extremis. Plant Biotechnol J (2012) 1.06
Field pathogenomics reveals the emergence of a diverse wheat yellow rust population. Genome Biol (2015) 1.05
Identification of SFR6, a key component in cold acclimation acting post-translationally on CBF function. Plant J (2009) 1.05
Discovery and development of exome-based, co-dominant single nucleotide polymorphism markers in hexaploid wheat (Triticum aestivum L.). Plant Biotechnol J (2012) 1.05
The inhibitor of wax 1 locus (Iw1) prevents formation of β- and OH-β-diketones in wheat cuticular waxes and maps to a sub-cM interval on chromosome arm 2BS. Plant J (2013) 1.04
RNA interference for wheat functional gene analysis. Transgenic Res (2007) 1.03
The Arabidopsis thylakoid ADP/ATP carrier TAAC has an additional role in supplying plastidic phosphoadenosine 5'-phosphosulfate to the cytosol. Plant Cell (2012) 1.01
A cyclic GMP-dependent signalling pathway regulates bacterial phytopathogenesis. EMBO J (2013) 0.99
Divergent functions of orthologous NAC transcription factors in wheat and rice. Plant Mol Biol (2012) 0.97
Control of sulfur partitioning between primary and secondary metabolism in Arabidopsis. Front Plant Sci (2012) 0.95
Identification of a major QTL controlling the content of B-type starch granules in Aegilops. J Exp Bot (2011) 0.95
Painting the chromosomes of Brachypodium: current status and future prospects. Chromosoma (2011) 0.94
Genomics reveals new landscapes for crop improvement. Genome Biol (2013) 0.93
Complete genome sequence of the proteolytic Clostridium botulinum type A5 (B3') strain H04402 065. J Bacteriol (2011) 0.92
TILLING and associated technologies. J Integr Plant Biol (2010) 0.85
The genetic location of the self-incompatibility locus in white clover (Trifolium repens L.). Theor Appl Genet (2010) 0.84
The PAS domain-containing histidine kinase RpfS is a second sensor for the diffusible signal factor of Xanthomonas campestris. Mol Microbiol (2014) 0.83
KLUH/CYP78A5 promotes organ growth without affecting the size of the early primordium. Plant Signal Behav (2010) 0.77
Yr36 confers partial resistance at temperatures below 18°C to U.K. isolates of Puccinia striiformis. Phytopathology (2014) 0.77
A change in temperature modulates defence to yellow (stripe) rust in wheat line UC1041 independently of resistance gene Yr36. BMC Plant Biol (2014) 0.75