Published in Nature on February 15, 2012
Enhancer RNAs and regulated transcriptional programs. Trends Biochem Sci (2014) 1.85
RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP). Nat Methods (2014) 1.72
RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure. Cell (2016) 1.67
Sounds of silence: synonymous nucleotides as a key to biological regulation and complexity. Nucleic Acids Res (2013) 1.44
The solution structural ensembles of RNA kink-turn motifs and their protein complexes. Nat Chem Biol (2016) 1.41
Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation. Mol Syst Biol (2014) 1.39
Visualizing transient low-populated structures of RNA. Nature (2012) 1.36
RNA secondary structure modeling at consistent high accuracy using differential SHAPE. RNA (2014) 1.18
Single-molecule correlated chemical probing of RNA. Proc Natl Acad Sci U S A (2014) 1.10
A general method for constructing atomic-resolution RNA ensembles using NMR residual dipolar couplings: the basis for interhelical motions revealed. J Am Chem Soc (2013) 1.09
MS2-TRAP (MS2-tagged RNA affinity purification): tagging RNA to identify associated miRNAs. Methods (2012) 1.08
Hierarchy of RNA functional dynamics. Annu Rev Biochem (2014) 1.04
The transcriptional complex between the BCL2 i-motif and hnRNP LL is a molecular switch for control of gene expression that can be modulated by small molecules. J Am Chem Soc (2014) 1.02
Recovering a representative conformational ensemble from underdetermined macromolecular structural data. J Am Chem Soc (2013) 1.00
Missing heritability of common diseases and treatments outside the protein-coding exome. Hum Genet (2014) 1.00
An RNA hairpin to G-quadruplex conformational transition. J Am Chem Soc (2012) 1.00
The structural basis of transfer RNA mimicry and conformational plasticity by a viral RNA. Nature (2014) 0.98
How bioinformatics influences health informatics: usage of biomolecular sequences, expression profiles and automated microscopic image analyses for clinical needs and public health. Health Inf Sci Syst (2013) 0.96
Coarse grained models reveal essential contributions of topological constraints to the conformational free energy of RNA bulges. J Phys Chem B (2014) 0.95
A Role for the Fifth G-Track in G-Quadruplex Forming Oncogene Promoter Sequences during Oxidative Stress: Do These "Spare Tires" Have an Evolved Function? ACS Cent Sci (2015) 0.94
Selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis. Nat Protoc (2015) 0.94
Characterizing slow chemical exchange in nucleic acids by carbon CEST and low spin-lock field R(1ρ) NMR spectroscopy. J Am Chem Soc (2013) 0.93
Advances in the determination of nucleic acid conformational ensembles. Annu Rev Phys Chem (2013) 0.91
Nucleotides adjacent to the ligand-binding pocket are linked to activity tuning in the purine riboswitch. J Mol Biol (2013) 0.89
A Mini-Twister Variant and Impact of Residues/Cations on the Phosphodiester Cleavage of this Ribozyme Class. Angew Chem Int Ed Engl (2015) 0.89
Deriving quantitative dynamics information for proteins and RNAs using ROTDIF with a graphical user interface. J Biomol NMR (2013) 0.88
Towards Accurate Prediction of Protonation Equilibrium of Nucleic Acids. J Phys Chem Lett (2013) 0.88
Invisible RNA state dynamically couples distant motifs. Proc Natl Acad Sci U S A (2014) 0.86
HrpA, an RNA helicase involved in RNA processing, is required for mouse infectivity and tick transmission of the Lyme disease spirochete. PLoS Pathog (2013) 0.86
New models of Tetrahymena telomerase RNA from experimentally derived constraints and modeling. J Am Chem Soc (2012) 0.86
Current status of miRNA-targeting therapeutics and preclinical studies against gastroenterological carcinoma. Mol Cell Ther (2013) 0.86
Synergetic regulation of translational reading-frame switch by ligand-responsive RNAs in mammalian cells. Nucleic Acids Res (2014) 0.86
Molecular population dynamics of DNA structures in a bcl-2 promoter sequence is regulated by small molecules and the transcription factor hnRNP LL. Nucleic Acids Res (2014) 0.84
Study of E. coli Hfq's RNA annealing acceleration and duplex destabilization activities using substrates with different GC-contents. Nucleic Acids Res (2012) 0.83
A structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing. Nature (2014) 0.83
Efficient in silico exploration of RNA interhelical conformations using Euler angles and WExplore. Nucleic Acids Res (2014) 0.82
Long noncoding RNAs during normal and malignant hematopoiesis. Int J Hematol (2014) 0.82
Conjoined use of EM and NMR in RNA structure refinement. PLoS One (2015) 0.81
Topological constraints are major determinants of tRNA tertiary structure and dynamics and provide basis for tertiary folding cooperativity. Nucleic Acids Res (2014) 0.81
Insights into domain-domain motions in proteins and RNA from solution NMR. Acc Chem Res (2014) 0.80
A single-stranded junction modulates nanosecond motional ordering of the substrate recognition duplex of a group I ribozyme. Chembiochem (2013) 0.80
Development and application of aromatic [(13)C, (1)H] SOFAST-HMQC NMR experiment for nucleic acids. J Biomol NMR (2014) 0.80
Folding a stable RNA pseudoknot through rearrangement of two hairpin structures. Nucleic Acids Res (2014) 0.80
Mapping L1 ligase ribozyme conformational switch. J Mol Biol (2012) 0.80
Measuring Residual Dipolar Couplings in Excited Conformational States of Nucleic Acids by CEST NMR Spectroscopy. J Am Chem Soc (2015) 0.80
Structural dynamics of a mitochondrial tRNA possessing weak thermodynamic stability. Biochemistry (2014) 0.80
Characterizing excited conformational states of RNA by NMR spectroscopy. Curr Opin Struct Biol (2015) 0.80
Understanding the kinetic mechanism of RNA single base pair formation. Proc Natl Acad Sci U S A (2015) 0.79
Characterizing RNA Excited States Using NMR Relaxation Dispersion. Methods Enzymol (2015) 0.79
Roles of long-range tertiary interactions in limiting dynamics of the Tetrahymena group I ribozyme. J Am Chem Soc (2014) 0.79
An RNA tertiary switch by modifying how helices are tethered. Genome Biol (2014) 0.79
Animal models of gene-environment interaction in schizophrenia: A dimensional perspective. Prog Neurobiol (2015) 0.79
Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch. Cell Rep (2015) 0.79
Contribution of silent mutations to thermal adaptation of RNA bacteriophage Qβ. J Virol (2014) 0.78
Riboswitch structure and dynamics by smFRET microscopy. Methods Enzymol (2014) 0.78
Modulating RNA Alignment Using Directional Dynamic Kinks: Application in Determining an Atomic-Resolution Ensemble for a Hairpin using NMR Residual Dipolar Couplings. J Am Chem Soc (2015) 0.78
Number variation of high stability regions is correlated with gene functions. Genome Biol Evol (2013) 0.78
Influence of dimethylsulfoxide on RNA structure and ligand binding. Anal Chem (2013) 0.78
Unveiling Inherent Degeneracies in Determining Population-Weighted Ensembles of Interdomain Orientational Distributions Using NMR Residual Dipolar Couplings: Application to RNA Helix Junction Helix Motifs. J Phys Chem B (2015) 0.77
Site-specific fluorescence dynamics in an RNA 'thermometer' reveals the role of ribosome binding in its temperature-sensitive switch function. Nucleic Acids Res (2014) 0.77
RNA tertiary structure analysis by 2'-hydroxyl molecular interference. Biochemistry (2014) 0.77
The RNA chaperone activity of the Trypanosoma brucei editosome raises the dynamic of bound pre-mRNAs. Sci Rep (2016) 0.77
3dRNAscore: a distance and torsion angle dependent evaluation function of 3D RNA structures. Nucleic Acids Res (2015) 0.76
A fully enzymatic method for site-directed spin labeling of long RNA. Nucleic Acids Res (2014) 0.76
Scan for Motifs: a webserver for the analysis of post-transcriptional regulatory elements in the 3' untranslated regions (3' UTRs) of mRNAs. BMC Bioinformatics (2014) 0.76
Dynamic motions of the HIV-1 frameshift site RNA. Biophys J (2015) 0.76
Complementary-addressed site-directed spin labeling of long natural RNAs. Nucleic Acids Res (2016) 0.75
Osmium Tetroxide as a probe of RNA Structure. RNA (2017) 0.75
Determination of the conformational ensemble of the TAR RNA by X-ray scattering interferometry. Nucleic Acids Res (2017) 0.75
Tuning RNA Flexibility with Helix Length and Junction Sequence. Biophys J (2015) 0.75
Excited States of Nucleic Acids Probed by Proton Relaxation Dispersion NMR Spectroscopy. Angew Chem Int Ed Engl (2016) 0.75
Folding behavior of a T-shaped, ribosome-binding translation enhancer implicated in a wide-spread conformational switch. Elife (2017) 0.75
Structure of the Ribosomal RNA Decoding Site Containing a Selenium-Modified Responsive Fluorescent Ribonucleoside Probe. Angew Chem Int Ed Engl (2017) 0.75
RNA modifications and structures cooperate to guide RNA-protein interactions. Nat Rev Mol Cell Biol (2017) 0.75
Genome-scale characterization of RNA tertiary structures and their functional impact by RNA solvent accessibility prediction. RNA (2016) 0.75
Molecular biology: RNA modification does a regulatory two-step. Nature (2015) 0.75
Shortening the HIV-1 TAR RNA Bulge by a Single Nucleotide Preserves Motional Modes over a Broad Range of Time Scales. Biochemistry (2016) 0.75
N1-methyl-pseudouridine in mRNA enhances translation through eIF2α-dependent and independent mechanisms by increasing ribosome density. Nucleic Acids Res (2017) 0.75
An excited state underlies gene regulation of a transcriptional riboswitch. Nat Chem Biol (2017) 0.75
The energy landscapes and motions of proteins. Science (1991) 18.93
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature (2002) 8.14
The role of dynamic conformational ensembles in biomolecular recognition. Nat Chem Biol (2009) 7.36
Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 A resolution. Science (1989) 7.35
Three-dimensional structure of a hammerhead ribozyme. Nature (1994) 7.14
Crystal structure of a hepatitis delta virus ribozyme. Nature (1998) 7.07
Locking and unlocking of ribosomal motions. Cell (2003) 6.59
A ratchet-like inter-subunit reorganization of the ribosome during translocation. Nature (2000) 6.29
Architecture and secondary structure of an entire HIV-1 RNA genome. Nature (2009) 6.12
A three-dimensional model of the myoglobin molecule obtained by x-ray analysis. Nature (1958) 5.64
Selection of tRNA by the ribosome requires a transition from an open to a closed form. Cell (2002) 5.62
Conformation of the TAR RNA-arginine complex by NMR spectroscopy. Science (1992) 5.08
A glycine-dependent riboswitch that uses cooperative binding to control gene expression. Science (2004) 4.91
The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage. Cell (1995) 4.79
An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes. Cell (2002) 4.60
tRNA selection and kinetic proofreading in translation. Nat Struct Mol Biol (2004) 4.54
The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA. Science (2009) 4.42
The mechanism for activation of GTP hydrolysis on the ribosome. Science (2010) 4.05
RNA editing of hepatitis delta virus antigenome by dsRNA-adenosine deaminase. Nature (1996) 4.04
Spliceosome structure and function. Cold Spring Harb Perspect Biol (2011) 4.01
RNA helicase activity associated with the human p68 protein. Nature (1989) 3.95
Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies. J Biol Chem (1974) 3.93
Control of alternative RNA splicing and gene expression by eukaryotic riboswitches. Nature (2007) 3.87
Spontaneous intersubunit rotation in single ribosomes. Mol Cell (2008) 3.77
Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy. Nat Struct Biol (2003) 3.77
Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy. Proc Natl Acad Sci U S A (2003) 3.64
Structural basis for translation termination on the 70S ribosome. Nature (2008) 3.50
Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy. Nature (2010) 3.48
Visualizing spatially correlated dynamics that directs RNA conformational transitions. Nature (2007) 3.25
Direct observation of hierarchical folding in single riboswitch aptamers. Science (2008) 3.22
Structures of the bacterial ribosome in classical and hybrid states of tRNA binding. Science (2011) 3.14
Structures of the ribosome in intermediate states of ratcheting. Science (2009) 2.96
An RNA chaperone activity of non-specific RNA binding proteins in hammerhead ribozyme catalysis. EMBO J (1994) 2.96
Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites. Nature (2010) 2.85
An RNA sensor for intracellular Mg(2+). Cell (2006) 2.74
Tandem riboswitch architectures exhibit complex gene control functions. Science (2006) 2.63
A stress-responsive RNA switch regulates VEGFA expression. Nature (2008) 2.58
A conformational switch controls hepatitis delta virus ribozyme catalysis. Nature (2004) 2.57
A Pumilio-induced RNA structure switch in p27-3' UTR controls miR-221 and miR-222 accessibility. Nat Cell Biol (2010) 2.53
Reconstitution of Bacillus subtilis trp attenuation in vitro with TRAP, the trp RNA-binding attenuation protein. Proc Natl Acad Sci U S A (1993) 2.52
Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules. Proc Natl Acad Sci U S A (2002) 2.47
Following movement of the L1 stalk between three functional states in single ribosomes. Proc Natl Acad Sci U S A (2009) 2.40
Compact and ordered collapse of randomly generated RNA sequences. Nat Struct Mol Biol (2005) 2.36
An allosteric self-splicing ribozyme triggered by a bacterial second messenger. Science (2010) 2.33
Formation of the first peptide bond: the structure of EF-P bound to the 70S ribosome. Science (2009) 2.33
Beyond kinetic traps in RNA folding. Curr Opin Struct Biol (2001) 2.32
RNA dynamics: it is about time. Curr Opin Struct Biol (2008) 2.31
ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1. Biochemistry (2005) 2.26
Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly. Nature (2008) 2.19
The dynamic landscapes of RNA architecture. Cell (2009) 2.09
tRNA-mediated transcription antitermination in vitro: codon-anticodon pairing independent of the ribosome. Proc Natl Acad Sci U S A (2002) 2.08
Paromomycin binding induces a local conformational change in the A-site of 16 S rRNA. J Mol Biol (1998) 2.06
Stepwise protein-mediated RNA folding directs assembly of telomerase ribonucleoprotein. Nature (2007) 2.05
Conformational switch in the decoding region of 16S rRNA during aminoacyl-tRNA selection on the ribosome. Nat Struct Biol (2000) 2.05
Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation. Proc Natl Acad Sci U S A (2009) 2.04
Kinetic redistribution of native and misfolded RNAs by a DEAD-box chaperone. Nature (2007) 2.00
Topology links RNA secondary structure with global conformation, dynamics, and adaptation. Science (2010) 2.00
Identification of the hammerhead ribozyme metal ion binding site responsible for rescue of the deleterious effect of a cleavage site phosphorothioate. Biochemistry (1999) 1.98
Visualizing ribosome biogenesis: parallel assembly pathways for the 30S subunit. Science (2010) 1.84
Structure and dynamics of a processive Brownian motor: the translating ribosome. Annu Rev Biochem (2010) 1.84
Structure of the S15,S6,S18-rRNA complex: assembly of the 30S ribosome central domain. Science (2000) 1.82
Multiple native states reveal persistent ruggedness of an RNA folding landscape. Nature (2010) 1.69
The role of fluctuations in tRNA selection by the ribosome. Proc Natl Acad Sci U S A (2007) 1.69
The T box mechanism: tRNA as a regulatory molecule. FEBS Lett (2010) 1.65
Reverse translocation of tRNA in the ribosome. Mol Cell (2006) 1.59
Induced fit of RNA on binding the L7Ae protein to the kink-turn motif. RNA (2005) 1.58
A conformational rearrangement in the spliceosome sets the stage for Prp22-dependent mRNA release. Mol Cell (2008) 1.52
ATP-dependent unwinding of U4/U6 snRNAs by the Brr2 helicase requires the C terminus of Prp8. Nat Struct Mol Biol (2008) 1.50
The dynamic nature of RNA as key to understanding riboswitch mechanisms. Acc Chem Res (2011) 1.39
An RNA conformational switch regulates pre-18S rRNA cleavage. J Mol Biol (2010) 1.37
The HIV-1 leader RNA conformational switch regulates RNA dimerization but does not regulate mRNA translation. Biochemistry (2005) 1.36
Structure of a tyrosyl-tRNA synthetase splicing factor bound to a group I intron RNA. Nature (2008) 1.36
Estimating the contributions of selection and self-organization in RNA secondary structure. J Mol Evol (1999) 1.33
A pH-responsive riboregulator. Genes Dev (2009) 1.33
A mRNA-based thermosensor controls expression of rhizobial heat shock genes. Nucleic Acids Res (2001) 1.33
Protein and Mg(2+)-induced conformational changes in the S15 binding site of 16 S ribosomal RNA. J Mol Biol (1998) 1.29
Local conformational changes in the catalytic core of the trans-acting hepatitis delta virus ribozyme accompany catalysis. Biochemistry (2002) 1.26
Structurally conserved five nucleotide bulge determines the overall topology of the core domain of human telomerase RNA. Proc Natl Acad Sci U S A (2010) 1.22
Toward a more complete view of tRNA biology. Nat Struct Mol Biol (2008) 1.20
How binding of small molecule and peptide ligands to HIV-1 TAR alters the RNA motional landscape. Nucleic Acids Res (2009) 1.20
Do conformational biases of simple helical junctions influence RNA folding stability and specificity? RNA (2009) 1.19
Two distinct binding modes of a protein cofactor with its target RNA. J Mol Biol (2006) 1.17
In vitro characterization of a miR-122-sensitive double-helical switch element in the 5' region of hepatitis C virus RNA. Nucleic Acids Res (2009) 1.11
RNA folding. Curr Opin Struct Biol (1995) 1.11
An RNA structural switch regulates diploid genome packaging by Moloney murine leukemia virus. J Mol Biol (2009) 1.10
Folding and catalysis of the hairpin ribozyme. Biochem Soc Trans (2005) 1.07
Binding of U1A protein changes RNA dynamics as observed by 13C NMR relaxation studies. Biochemistry (2007) 1.05
The influence of symmetric internal loops on the flexibility of RNA. J Mol Biol (1996) 1.04
Topological constraints: using RNA secondary structure to model 3D conformation, folding pathways, and dynamic adaptation. Curr Opin Struct Biol (2011) 1.04
RNA dynamics by design: biasing ensembles towards the ligand-bound state. Angew Chem Int Ed Engl (2010) 1.03
Protein-induced conformational changes of RNA during the assembly of human signal recognition particle. J Mol Biol (2006) 1.00
Nonhierarchical ribonucleoprotein assembly suggests a strain-propagation model for protein-facilitated RNA folding. Biochemistry (2010) 0.98
Removal of covalent heterogeneity reveals simple folding behavior for P4-P6 RNA. J Biol Chem (2011) 0.95
New insights into the fundamental role of topological constraints as a determinant of two-way junction conformation. Nucleic Acids Res (2011) 0.93
Minimum-energy path for a u6 RNA conformational change involving protonation, base-pair rearrangement and base flipping. J Mol Biol (2009) 0.90
Structure of the K-turn U4 RNA: a combined NMR and SANS study. Nucleic Acids Res (2010) 0.89
DExD/H-box Prp5 protein is in the spliceosome during most of the splicing cycle. RNA (2009) 0.89
NMR reveals the absence of hydrogen bonding in adjacent UU and AG mismatches in an isolated internal loop from ribosomal RNA. Biochemistry (2007) 0.84
RNA molecules with structure dependent functions are uniquely folded. Nucleic Acids Res (2002) 0.84
Probing mechanism and transition state of RNA refolding. ACS Chem Biol (2010) 0.82
Visualizing spatially correlated dynamics that directs RNA conformational transitions. Nature (2007) 3.25
Transient Hoogsteen base pairs in canonical duplex DNA. Nature (2011) 2.46
Resolving the motional modes that code for RNA adaptation. Science (2006) 2.15
Topology links RNA secondary structure with global conformation, dynamics, and adaptation. Science (2010) 2.00
Dynamics of large elongated RNA by NMR carbon relaxation. J Am Chem Soc (2007) 1.41
Visualizing transient low-populated structures of RNA. Nature (2012) 1.36
NMR studies of RNA dynamics and structural plasticity using NMR residual dipolar couplings. Biopolymers (2007) 1.36
Discovery of selective bioactive small molecules by targeting an RNA dynamic ensemble. Nat Chem Biol (2011) 1.31
Extending the range of microsecond-to-millisecond chemical exchange detected in labeled and unlabeled nucleic acids by selective carbon R(1rho) NMR spectroscopy. J Am Chem Soc (2009) 1.24
Characterizing complex dynamics in the transactivation response element apical loop and motional correlations with the bulge by NMR, molecular dynamics, and mutagenesis. Biophys J (2008) 1.24
Constructing RNA dynamical ensembles by combining MD and motionally decoupled NMR RDCs: new insights into RNA dynamics and adaptive ligand recognition. Nucleic Acids Res (2009) 1.21
Argininamide binding arrests global motions in HIV-1 TAR RNA: comparison with Mg2+-induced conformational stabilization. J Mol Biol (2004) 1.21
Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy. Nat Methods (2011) 1.20
Insight into the CSA tensors of nucleobase carbons in RNA polynucleotides from solution measurements of residual CSA: towards new long-range orientational constraints. J Magn Reson (2006) 1.16
Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings. Nat Protoc (2007) 1.16
Impact of static and dynamic A-form heterogeneity on the determination of RNA global structural dynamics using NMR residual dipolar couplings. J Biomol NMR (2006) 1.16
Modulating protein structure with fluorous amino acids: increased stability and native-like structure conferred on a 4-helix bundle protein by hexafluoroleucine. J Am Chem Soc (2006) 1.11
3D maps of RNA interhelical junctions. Nat Protoc (2011) 1.10
Probing transient Hoogsteen hydrogen bonds in canonical duplex DNA using NMR relaxation dispersion and single-atom substitution. J Am Chem Soc (2012) 1.10
A general method for constructing atomic-resolution RNA ensembles using NMR residual dipolar couplings: the basis for interhelical motions revealed. J Am Chem Soc (2013) 1.09
Probing motions between equivalent RNA domains using magnetic field induced residual dipolar couplings: accounting for correlations between motions and alignment. J Am Chem Soc (2003) 1.06
Unraveling the structural complexity in a single-stranded RNA tail: implications for efficient ligand binding in the prequeuosine riboswitch. Nucleic Acids Res (2011) 1.06
Resolving fast and slow motions in the internal loop containing stem-loop 1 of HIV-1 that are modulated by Mg2+ binding: role in the kissing-duplex structural transition. Nucleic Acids Res (2007) 1.06
Probing Na(+)-induced changes in the HIV-1 TAR conformational dynamics using NMR residual dipolar couplings: new insights into the role of counterions and electrostatic interactions in adaptive recognition. Biochemistry (2007) 1.05
Hierarchy of RNA functional dynamics. Annu Rev Biochem (2014) 1.04
Topological constraints: using RNA secondary structure to model 3D conformation, folding pathways, and dynamic adaptation. Curr Opin Struct Biol (2011) 1.04
RNA dynamics by design: biasing ensembles towards the ligand-bound state. Angew Chem Int Ed Engl (2010) 1.03
Extending the NMR spatial resolution limit for RNA by motional couplings. Nat Methods (2008) 1.02
iRED analysis of TAR RNA reveals motional coupling, long-range correlations, and a dynamical hinge. Biophys J (2007) 1.01
Direct evidence for methyl group coordination by carbon-oxygen hydrogen bonds in the lysine methyltransferase SET7/9. J Biol Chem (2011) 0.99
Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound structure. Nucleic Acids Res (2013) 0.98
Conservation and functional importance of carbon-oxygen hydrogen bonding in AdoMet-dependent methyltransferases. J Am Chem Soc (2013) 0.97
Beyond static structures of RNA by NMR: folding, refolding, and dynamics at atomic resolution. Biopolymers (2007) 0.96
Domain-elongation NMR spectroscopy yields new insights into RNA dynamics and adaptive recognition. RNA (2009) 0.96
Coarse grained models reveal essential contributions of topological constraints to the conformational free energy of RNA bulges. J Phys Chem B (2014) 0.95
Characterizing the protonation state of cytosine in transient G·C Hoogsteen base pairs in duplex DNA. J Am Chem Soc (2013) 0.94
Utility of 1H NMR chemical shifts in determining RNA structure and dynamics. J Phys Chem B (2013) 0.93
Probing sequence-specific DNA flexibility in a-tracts and pyrimidine-purine steps by nuclear magnetic resonance (13)C relaxation and molecular dynamics simulations. Biochemistry (2012) 0.93
New insights into the fundamental role of topological constraints as a determinant of two-way junction conformation. Nucleic Acids Res (2011) 0.93
Constructing atomic-resolution RNA structural ensembles using MD and motionally decoupled NMR RDCs. Methods (2009) 0.92
Advances in the determination of nucleic acid conformational ensembles. Annu Rev Phys Chem (2013) 0.91
A historical account of hoogsteen base-pairs in duplex DNA. Biopolymers (2013) 0.90
Sequence-specific B-DNA flexibility modulates Z-DNA formation. J Am Chem Soc (2011) 0.90
Ultrahigh resolution characterization of domain motions and correlations by multialignment and multireference residual dipolar coupling NMR. J Phys Chem B (2008) 0.90
Evidence that electrostatic interactions dictate the ligand-induced arrest of RNA global flexibility. Angew Chem Int Ed Engl (2005) 0.88
Using fluorine nuclear magnetic resonance to probe the interaction of membrane-active peptides with the lipid bilayer. Biochemistry (2010) 0.86
Variable helix elongation as a tool to modulate RNA alignment and motional couplings. J Magn Reson (2009) 0.85
NMR studies of an immunomodulatory benzodiazepine binding to its molecular target on the mitochondrial F(1)F(0)-ATPase. Biopolymers (2010) 0.84
Carbon sequestration in Synechococcus Sp.: from molecular machines to hierarchical modeling. OMICS (2002) 0.84
Approximate reconstruction of continuous spatially complex domain motions by multialignment NMR residual dipolar couplings. J Phys Chem B (2009) 0.83
Preparation, resonance assignment, and preliminary dynamics characterization of residue specific 13C/15N-labeled elongated DNA for the study of sequence-directed dynamics by NMR. J Biomol NMR (2009) 0.83
Using fluorine nuclear magnetic resonance to probe changes in the structure and dynamics of membrane-active peptides interacting with lipid bilayers. Biochemistry (2011) 0.81
Manipulating unconventional CH-based hydrogen bonding in a methyltransferase via noncanonical amino acid mutagenesis. ACS Chem Biol (2014) 0.80
NMR-derived solution structure of SUMO from Drosophila melanogaster (dSmt3). Proteins (2009) 0.80
Intrinsic dynamics of DNA-polymer complexes: a mechanism for DNA release. Mol Pharm (2012) 0.79
An RNA tertiary switch by modifying how helices are tethered. Genome Biol (2014) 0.79
Thermodynamics of RNA melting, one base pair at a time. RNA (2010) 0.79
NMR and XAS reveal an inner-sphere metal binding site in the P4 helix of the metallo-ribozyme ribonuclease P. Proc Natl Acad Sci U S A (2010) 0.78
Influence of dimethylsulfoxide on RNA structure and ligand binding. Anal Chem (2013) 0.78
Conserved structural and dynamics features in the denatured states of drosophila SUMO, human SUMO and ubiquitin proteins: Implications to sequence-folding paradigm. Proteins (2009) 0.77
Noncanonical secondary structure stabilizes mitochondrial tRNA(Ser(UCN)) by reducing the entropic cost of tertiary folding. J Am Chem Soc (2015) 0.77
Guanine to inosine substitution leads to large increases in the population of a transient G·C Hoogsteen base pair. Biochemistry (2014) 0.76
Incorporation of CC steps into Z-DNA: interplay between B-Z junction and Z-DNA helical formation. Biochemistry (2012) 0.76
Structural biology: Aerial view of the HIV genome. Nature (2009) 0.75
RNA structure: Adding a second dimension. Nat Chem (2011) 0.75
A rare example of lock-and-key RNA recognition. J Mol Biol (2010) 0.75
Origin of the Substitution Mechanism for the Binding of Organic Ligands on the Surface of CsPbBr3 Perovskite Nanocubes. J Phys Chem Lett (2017) 0.75
1H, 15N, 13C resonance assignment of folded and 8 M urea-denatured state of SUMO from Drosophila melanogaster. Biomol NMR Assign (2007) 0.75
120 Role of dynamic base pair polymorphism in the central dogma of molecular biology. J Biomol Struct Dyn (2015) 0.75