The protein expression landscape of the Arabidopsis root.

PubWeight™: 1.36‹?› | Rank: Top 10%

🔗 View Article (PMC 3344980)

Published in Proc Natl Acad Sci U S A on March 23, 2012

Authors

Jalean J Petricka1, Monica A Schauer, Molly Megraw, Natalie W Breakfield, J Will Thompson, Stoyan Georgiev, Erik J Soderblom, Uwe Ohler, Martin Arthur Moseley, Ueli Grossniklaus, Philip N Benfey

Author Affiliations

1: Department of Biology, Duke Center for Systems Biology, and Institute for Genome Sciences and Policy, Duke University, Durham, NC 27708, USA.

Articles citing this

Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany. Ann Bot (2013) 3.28

A spatio-temporal understanding of growth regulation during the salt stress response in Arabidopsis. Plant Cell (2013) 1.31

Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks. Plant Cell (2012) 1.27

Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model. Plant Physiol (2014) 1.14

Mapping gene activity of Arabidopsis root hairs. Genome Biol (2013) 1.10

Abiotic stress responses in plant roots: a proteomics perspective. Front Plant Sci (2014) 1.10

A Scalable Open-Source Pipeline for Large-Scale Root Phenotyping of Arabidopsis. Plant Cell (2014) 1.08

Cell-Type-Specific Cytokinin Distribution within the Arabidopsis Primary Root Apex. Plant Cell (2015) 1.07

Reconstruction of protein networks from an atlas of maize seed proteotypes. Proc Natl Acad Sci U S A (2013) 1.07

Biological significance of complex N-glycans in plants and their impact on plant physiology. Front Plant Sci (2014) 1.01

Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data. Genome Res (2013) 0.99

A galacturonic acid-containing xyloglucan is involved in Arabidopsis root hair tip growth. Plant Cell (2012) 0.97

Gel-based and gel-free quantitative proteomics approaches at a glance. Int J Plant Genomics (2012) 0.92

Studies toward the unique pederin family member psymberin: structure-activity relationships, biochemical studies, and genetics identify the mode-of-action of psymberin. J Am Chem Soc (2012) 0.86

Root systems biology: integrative modeling across scales, from gene regulatory networks to the rhizosphere. Plant Physiol (2013) 0.85

High-Resolution Expression Map of the Arabidopsis Root Reveals Alternative Splicing and lincRNA Regulation. Dev Cell (2016) 0.84

Dissecting the subcellular compartmentation of proteins and metabolites in arabidopsis leaves using non-aqueous fractionation. Mol Cell Proteomics (2014) 0.83

The female gametophyte: an emerging model for cell type-specific systems biology in plant development. Front Plant Sci (2015) 0.81

A versatile Multisite Gateway-compatible promoter and transgenic line collection for cell type-specific functional genomics in Arabidopsis. Plant J (2016) 0.81

Genetic control of root growth: from genes to networks. Ann Bot (2015) 0.81

Proteasome targeting of proteins in Arabidopsis leaf mesophyll, epidermal and vascular tissues. Front Plant Sci (2015) 0.80

Structural, Evolutionary, and Functional Analysis of the Class III Peroxidase Gene Family in Chinese Pear (Pyrus bretschneideri). Front Plant Sci (2016) 0.79

Dissecting organ-specific transcriptomes through RNA-sequencing. Plant Methods (2013) 0.79

Inter-subunit interactions between glutamate-like receptors in Arabidopsis. Plant Signal Behav (2013) 0.79

Functions of long intergenic non-coding (linc) RNAs in plants. J Plant Res (2016) 0.78

Technologies for systems-level analysis of specific cell types in plants. Plant Sci (2012) 0.77

An Inventory of Nutrient-Responsive Genes in Arabidopsis Root Hairs. Front Plant Sci (2016) 0.77

Development of a laser capture microscope-based single-cell-type proteomics tool for studying proteomes of individual cell layers of plant roots. Hortic Res (2016) 0.77

Developmental Nuclear Localization and Quantification of GFP-Tagged EB1c in Arabidopsis Root Using Light-Sheet Microscopy. Front Plant Sci (2016) 0.77

Co-ordination and divergence of cell-specific transcription and translation of genes in arabidopsis root cells. Ann Bot (2014) 0.77

Transcriptomic Signature of the SHATTERPROOF2 Expression Domain Reveals the Meristematic Nature of Arabidopsis Gynoecial Medial Domain. Plant Physiol (2016) 0.76

A high-resolution tissue-specific proteome and phosphoproteome atlas of maize primary roots reveals functional gradients along the root axes. Plant Physiol (2015) 0.76

Cell-type specific metabolic profiling of Arabidopsis thaliana protoplasts as a tool for plant systems biology. Metabolomics (2015) 0.76

PAPE (Prefractionation-Assisted Phosphoprotein Enrichment): A Novel Approach for Phosphoproteomic Analysis of Green Tissues from Plants. Proteomes (2013) 0.75

The Arabidopsis phytohormone crosstalk network involves a consecutive metabolic route and circular control units of transcription factors that regulate enzyme-encoding genes. BMC Syst Biol (2016) 0.75

Autofluorescence as a Signal to Sort Developing Glandular Trichomes by Flow Cytometry. Front Plant Sci (2016) 0.75

Meselect - A Rapid and Effective Method for the Separation of the Main Leaf Tissue Types. Front Plant Sci (2016) 0.75

Toward a systems analysis of the root. Cold Spring Harb Symp Quant Biol (2012) 0.75

Large Cellular Inclusions Accumulate in Arabidopsis Roots Exposed to Low-Sulfur Conditions. Plant Physiol (2015) 0.75

Dual use of peptide mass spectra: Protein atlas and genome annotation. Curr Plant Biol (2015) 0.75

Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles. Front Plant Sci (2016) 0.75

Quantitative Proteomic Analysis of the Response to Zinc, Magnesium, and Calcium Deficiency in Specific Cell Types of Arabidopsis Roots. Proteomes (2016) 0.75

Molecular phenotyping of plant single cell-types enhances forward genetic analyses. Front Plant Sci (2015) 0.75

Elucidation of salt-tolerance metabolic pathways in contrasting rice genotypes and their segregating progenies. Plant Cell Rep (2016) 0.75

Articles cited by this

Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics (2003) 100.88

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics (2003) 82.89

Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res (2003) 52.74

Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science (2003) 39.19

TM4: a free, open-source system for microarray data management and analysis. Biotechniques (2003) 38.02

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal Chem (2002) 35.30

Global analysis of protein expression in yeast. Nature (2003) 34.15

A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem (2003) 29.58

Mass spectrometry-based proteomics. Nature (2003) 28.94

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat Methods (2007) 25.29

CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res (2010) 19.07

Correlation between protein and mRNA abundance in yeast. Mol Cell Biol (1999) 16.95

TM4 microarray software suite. Methods Enzymol (2006) 13.78

Regulation of cellular metabolism by protein lysine acetylation. Science (2010) 10.55

A gene expression map of the Arabidopsis root. Science (2003) 9.95

The BioGRID Interaction Database: 2011 update. Nucleic Acids Res (2010) 8.46

Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissue. Science (1998) 7.95

Human housekeeping genes are compact. Trends Genet (2003) 7.65

AraCyc: a biochemical pathway database for Arabidopsis. Plant Physiol (2003) 7.59

Interactome networks and human disease. Cell (2011) 7.16

A high-resolution root spatiotemporal map reveals dominant expression patterns. Science (2007) 6.60

Lateral relocation of auxin efflux regulator PIN3 mediates tropism in Arabidopsis. Nature (2002) 6.23

A guided tour of the Trans-Proteomic Pipeline. Proteomics (2010) 5.09

Discordant protein and mRNA expression in lung adenocarcinomas. Mol Cell Proteomics (2002) 4.56

Cell identity mediates the response of Arabidopsis roots to abiotic stress. Science (2008) 4.40

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics. Science (2008) 4.38

WEREWOLF, a MYB-related protein in Arabidopsis, is a position-dependent regulator of epidermal cell patterning. Cell (1999) 3.87

Decoding signalling networks by mass spectrometry-based proteomics. Nat Rev Mol Cell Biol (2010) 3.78

Genetics and biochemistry of seed flavonoids. Annu Rev Plant Biol (2006) 3.55

Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis. PLoS Biol (2006) 3.52

MetaCyc and AraCyc. Metabolic pathway databases for plant research. Plant Physiol (2005) 3.00

TRIPTYCHON and CAPRICE mediate lateral inhibition during trichome and root hair patterning in Arabidopsis. EMBO J (2002) 2.92

Analysis, statistical validation and dissemination of large-scale proteomics datasets generated by tandem MS. Drug Discov Today (2004) 2.82

Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines. Nat Methods (2005) 2.62

APL regulates vascular tissue identity in Arabidopsis. Nature (2003) 2.59

Transcriptional profile of the Arabidopsis root quiescent center. Plant Cell (2005) 2.55

Interactions among PIN-FORMED and P-glycoprotein auxin transporters in Arabidopsis. Plant Cell (2007) 2.52

Target identification using drug affinity responsive target stability (DARTS). Proc Natl Acad Sci U S A (2009) 2.40

Analysis of proteome dynamics in the mouse brain. Proc Natl Acad Sci U S A (2010) 2.37

Correlations between RNA and protein expression profiles in 23 human cell lines. BMC Genomics (2009) 2.36

The yeast homolog to mouse Tcp-1 affects microtubule-mediated processes. Mol Cell Biol (1991) 2.32

Target-decoy search strategy for mass spectrometry-based proteomics. Methods Mol Biol (2010) 2.27

A simple method for gene expression and chromatin profiling of individual cell types within a tissue. Dev Cell (2010) 2.24

Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Proc Natl Acad Sci U S A (2006) 2.23

Amyloplasts are necessary for full gravitropic sensitivity in roots of Arabidopsis thaliana. Planta (1989) 2.05

Functional proteomics of Arabidopsis thaliana guard cells uncovers new stomatal signaling pathways. Plant Cell (2008) 2.04

Analysis of the root-hair morphogenesis transcriptome reveals the molecular identity of six genes with roles in root-hair development in Arabidopsis. Plant J (2006) 1.90

Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function. Genome Res (2009) 1.83

Protein identification by tandem mass spectrometry and sequence database searching. Methods Mol Biol (2007) 1.82

Cis-element- and transcriptome-based screening of root hair-specific genes and their functional characterization in Arabidopsis. Plant Physiol (2009) 1.80

Label-free detection of differential protein expression by LC/MALDI mass spectrometry. J Proteome Res (2008) 1.78

Characterization of substrate specificity of plant FatA and FatB acyl-ACP thioesterases. Arch Biochem Biophys (2002) 1.45

Proteome of mouse oocytes at different developmental stages. Proc Natl Acad Sci U S A (2010) 1.36

Dynamic host energetics and cytoskeletal proteomes in human immunodeficiency virus type 1-infected human primary CD4 cells: analysis by multiplexed label-free mass spectrometry. J Virol (2009) 1.35

Omics meet networks - using systems approaches to infer regulatory networks in plants. Curr Opin Plant Biol (2009) 1.34

The Drosophila melanogaster sperm proteome-II (DmSP-II). J Proteomics (2010) 1.29

Generating and navigating proteome maps using mass spectrometry. Nat Rev Mol Cell Biol (2010) 1.29

The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana. PLoS Genet (2006) 1.28

Crystal structure of the open conformation of the mammalian chaperonin CCT in complex with tubulin. Nat Struct Mol Biol (2010) 1.26

Revealing novel telomere proteins using in vivo cross-linking, tandem affinity purification, and label-free quantitative LC-FTICR-MS. Mol Cell Proteomics (2010) 1.22

Root hair systems biology. Trends Plant Sci (2010) 1.21

Quantitative analysis of complex peptide mixtures using FTMS and differential mass spectrometry. J Am Soc Mass Spectrom (2006) 1.19

Quantitative proteomics analysis demonstrates post-transcriptional regulation of embryonic stem cell differentiation to hematopoiesis. Mol Cell Proteomics (2007) 1.19

Activities of the chaperonin containing TCP-1 (CCT): implications for cell cycle progression and cytoskeletal organisation. Cell Stress Chaperones (2008) 1.15

The mouse sperm proteome characterized via IPG strip prefractionation and LC-MS/MS identification. Proteomics (2008) 1.14

Ultrastructure and movements of cell organelles in the root cap of agravitropic mutants and normal seedlings of Arabidopsis thaliana. Physiol Plant (1984) 1.14

A mighty small heart: the cardiac proteome of adult Drosophila melanogaster. PLoS One (2011) 1.13

High quality catalog of proteotypic peptides from human heart. J Proteome Res (2008) 1.13

Application of an end-to-end biomarker discovery platform to identify target engagement markers in cerebrospinal fluid by high resolution differential mass spectrometry. J Proteome Res (2010) 1.12

Quantitative analysis of histone deacetylase-1 selective histone modifications by differential mass spectrometry. J Proteome Res (2008) 1.10

Combining expression and comparative evolutionary analysis. The COBRA gene family. Plant Physiol (2006) 1.09

Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment. Methods Mol Biol (2009) 1.08

Proteomic analysis of mouse oocytes reveals 28 candidate factors of the "reprogrammome". J Proteome Res (2011) 1.06

Reconstructing regulatory network transitions. Trends Cell Biol (2011) 0.96

Potential of Arabidopsis systems biology to advance the biofuel field. Trends Biotechnol (2010) 0.92

Protein storage vacuoles are transformed into lytic vacuoles in root meristematic cells of germinating seedlings by multiple, cell type-specific mechanisms. Plant Physiol (2011) 0.92

Intergenic and genic sequence lengths have opposite relationships with respect to gene expression. PLoS One (2008) 0.90

Validation of gel-free, label-free quantitative proteomics approaches: applications for seed allergen profiling. J Proteomics (2008) 0.87

Global survey of protein expression during gonadal sex determination in mice. Mol Cell Proteomics (2009) 0.83

Potential biomarkers of muscle injury after eccentric exercise. Biomarkers (2010) 0.83

Proteome of the Caenorhabditis elegans oocyte. J Proteome Res (2011) 0.82

Articles by these authors

A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol (2003) 13.32

A gene expression map of the Arabidopsis root. Science (2003) 9.95

A guide through present computational approaches for the identification of mammalian microRNA targets. Nat Methods (2006) 7.00

A high-resolution root spatiotemporal map reveals dominant expression patterns. Science (2007) 6.60

A viral microRNA functions as an orthologue of cellular miR-155. Nature (2007) 5.09

Spatial preferences of microRNA targets in 3' untranslated regions. BMC Genomics (2007) 4.99

Cell identity mediates the response of Arabidopsis roots to abiotic stress. Science (2008) 4.40

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics. Science (2008) 4.38

Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability. Mol Cell (2011) 4.29

Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root. Cell (2010) 4.19

An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants. Science (2007) 3.55

Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis. PLoS Biol (2006) 3.52

Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase. Plant Cell (2005) 3.48

The FERONIA receptor-like kinase mediates male-female interactions during pollen tube reception. Science (2007) 3.41

Imaging and analysis platform for automatic phenotyping and trait ranking of plant root systems. Plant Physiol (2010) 3.30

Oscillating gene expression determines competence for periodic Arabidopsis root branching. Science (2010) 3.26

Gene expression divergence recapitulates the developmental hourglass model. Nature (2010) 3.20

Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate. Nature (2010) 3.19

Cellular efflux of auxin catalyzed by the Arabidopsis MDR/PGP transporter AtPGP1. Plant J (2005) 3.04

The Polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1. Genes Dev (2003) 2.99

An auxin gradient and maximum in the Arabidopsis root apex shown by high-resolution cell-specific analysis of IAA distribution and synthesis. Plant Cell (2009) 2.97

FMRP targets distinct mRNA sequence elements to regulate protein expression. Nature (2012) 2.95

PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data. Genome Biol (2011) 2.82

Frequency and fate of microRNA editing in human brain. Nucleic Acids Res (2008) 2.77

Proteomic analysis of S-nitrosylation and denitrosylation by resin-assisted capture. Nat Biotechnol (2009) 2.69

Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines. Nat Methods (2005) 2.62

Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome. Cell (2007) 2.58

Arabidopsis MSI1 is a component of the MEA/FIE Polycomb group complex and required for seed development. EMBO J (2003) 2.56

Transcriptional profile of the Arabidopsis root quiescent center. Plant Cell (2005) 2.55

The viral and cellular microRNA targetome in lymphoblastoid cell lines. PLoS Pathog (2012) 2.45

The Arabidopsis mutant feronia disrupts the female gametophytic control of pollen tube reception. Development (2003) 2.40

Conserved molecular components for pollen tube reception and fungal invasion. Science (2010) 2.36

The MTE, a new core promoter element for transcription by RNA polymerase II. Genes Dev (2004) 2.30

An integrated clinico-metabolomic model improves prediction of death in sepsis. Sci Transl Med (2013) 2.23

Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Proc Natl Acad Sci U S A (2006) 2.23

Maternal epigenetic pathways control parental contributions to Arabidopsis early embryogenesis. Cell (2011) 2.19

A paired-end sequencing strategy to map the complex landscape of transcription initiation. Nat Methods (2010) 2.14

Viral microRNA targetome of KSHV-infected primary effusion lymphoma cell lines. Cell Host Microbe (2011) 2.13

Control of Arabidopsis root development. Annu Rev Plant Biol (2012) 2.13

The Arabidopsis thaliana MEDEA Polycomb group protein controls expression of PHERES1 by parental imprinting. Nat Genet (2004) 2.12

Apomixis: a developmental perspective. Annu Rev Plant Biol (2003) 2.09

COBRA, an Arabidopsis extracellular glycosyl-phosphatidyl inositol-anchored protein, specifically controls highly anisotropic expansion through its involvement in cellulose microfibril orientation. Plant Cell (2005) 2.06

Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root. Science (2008) 2.06

Natural enemies drive geographic variation in plant defenses. Science (2012) 2.04

SHORT INTEGUMENTS1/SUSPENSOR1/CARPEL FACTORY, a Dicer homolog, is a maternal effect gene required for embryo development in Arabidopsis. Plant Physiol (2002) 2.04

Regulation of Arabidopsis tapetum development and function by DYSFUNCTIONAL TAPETUM1 (DYT1) encoding a putative bHLH transcription factor. Development (2006) 2.04

Different Polycomb group complexes regulate common target genes in Arabidopsis. EMBO Rep (2006) 2.02

Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment. Genome Biol (2006) 2.02

Egg cell-secreted EC1 triggers sperm cell activation during double fertilization. Science (2012) 2.01

The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots. Plant Cell (2010) 1.98

GiA Roots: software for the high throughput analysis of plant root system architecture. BMC Plant Biol (2012) 1.98

ATX-1, an Arabidopsis homolog of trithorax, activates flower homeotic genes. Curr Biol (2003) 1.91

Transcriptional programs of early reproductive stages in Arabidopsis. Plant Physiol (2004) 1.86

Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes. Curr Biol (2010) 1.85

Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function. Genome Res (2009) 1.83

The art and design of genetic screens: Arabidopsis thaliana. Nat Rev Genet (2002) 1.82

Predicting cell-type-specific gene expression from regions of open chromatin. Genome Res (2012) 1.78

Bimodular auxin response controls organogenesis in Arabidopsis. Proc Natl Acad Sci U S A (2010) 1.78

miRGen 2.0: a database of microRNA genomic information and regulation. Nucleic Acids Res (2009) 1.78

Site-specific analysis of protein S-acylation by resin-assisted capture. J Lipid Res (2010) 1.77

Evidence-ranked motif identification. Genome Biol (2010) 1.75

From lab to field, new approaches to phenotyping root system architecture. Curr Opin Plant Biol (2011) 1.73

Mechanisms regulating SHORT-ROOT intercellular movement. Curr Biol (2004) 1.70

Identification of new members of Fertilisation Independent Seed Polycomb Group pathway involved in the control of seed development in Arabidopsis thaliana. Development (2004) 1.68

ARABIDOPSIS TRITHORAX1 dynamically regulates FLOWERING LOCUS C activation via histone 3 lysine 4 trimethylation. Plant Cell (2008) 1.66

SETH1 and SETH2, two components of the glycosylphosphatidylinositol anchor biosynthetic pathway, are required for pollen germination and tube growth in Arabidopsis. Plant Cell (2003) 1.63

Not just another hole in the wall: understanding intercellular protein trafficking. Genes Dev (2005) 1.61

Selected aspects of transgenerational epigenetic inheritance and resetting in plants. Curr Opin Plant Biol (2011) 1.60

Editing of Epstein-Barr virus-encoded BART6 microRNAs controls their dicer targeting and consequently affects viral latency. J Biol Chem (2010) 1.59

High predictive accuracy of an unbiased proteomic profile for sustained virologic response in chronic hepatitis C patients. Hepatology (2011) 1.59

PAMP (pathogen-associated molecular pattern)-induced changes in plasma membrane compartmentalization reveal novel components of plant immunity. J Biol Chem (2010) 1.59

A broad competence to respond to SHORT ROOT revealed by tissue-specific ectopic expression. Development (2004) 1.58

Abl family kinases modulate T cell-mediated inflammation and chemokine-induced migration through the adaptor HEF1 and the GTPase Rap1. Sci Signal (2012) 1.57

Embryo and endosperm inherit distinct chromatin and transcriptional states from the female gametes in Arabidopsis. Plant Cell (2010) 1.57

Polycomb group and trithorax group proteins in Arabidopsis. Biochim Biophys Acta (2007) 1.57

The central cell plays a critical role in pollen tube guidance in Arabidopsis. Plant Cell (2007) 1.56

A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division. Cell (2012) 1.53

Genotypic recognition and spatial responses by rice roots. Proc Natl Acad Sci U S A (2013) 1.52

Association of calcineurin with the COPI protein Sec28 and the COPII protein Sec13 revealed by quantitative proteomics. PLoS One (2011) 1.52

Quantitative proteomics reveals metabolic and pathogenic properties of Chlamydia trachomatis developmental forms. Mol Microbiol (2011) 1.51

Quantification of transcription factor expression from Arabidopsis images. Bioinformatics (2006) 1.50

A stele-enriched gene regulatory network in the Arabidopsis root. Mol Syst Biol (2011) 1.49

3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture. Proc Natl Acad Sci U S A (2013) 1.46

Regulation and flexibility of genomic imprinting during seed development. Plant Cell (2011) 1.46

Informative priors based on transcription factor structural class improve de novo motif discovery. Bioinformatics (2006) 1.45

Translocation of sickle cell erythrocyte microRNAs into Plasmodium falciparum inhibits parasite translation and contributes to malaria resistance. Cell Host Microbe (2012) 1.45

Restraint of apoptosis during mitosis through interdomain phosphorylation of caspase-2. EMBO J (2009) 1.42

Cell identity regulators link development and stress responses in the Arabidopsis root. Dev Cell (2011) 1.42

Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level. PLoS Genet (2011) 1.41

The COBRA family of putative GPI-anchored proteins in Arabidopsis. A new fellowship in expansion. Plant Physiol (2002) 1.39

Dynamic regulatory interactions of Polycomb group genes: MEDEA autoregulation is required for imprinted gene expression in Arabidopsis. Genes Dev (2006) 1.39

Positive darwinian selection at the imprinted MEDEA locus in plants. Nature (2007) 1.39

LACHESIS restricts gametic cell fate in the female gametophyte of Arabidopsis. PLoS Biol (2007) 1.38