PubRank

Stephan Beck

Author PubWeight™ 316.53‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Initial sequencing and comparative analysis of the mouse genome. Nature 2002 96.15
2 A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat Biotechnol 2008 21.72
3 DNA methylation profiling of human chromosomes 6, 20 and 22. Nat Genet 2006 18.08
4 A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC. Nat Genet 2006 15.63
5 Complete MHC haplotype sequencing for common disease gene mapping. Genome Res 2004 12.09
6 Epigenome-wide association studies for common human diseases. Nat Rev Genet 2011 7.96
7 The DNA sequence of the human X chromosome. Nature 2005 6.97
8 Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer. Genome Res 2010 6.03
9 Gene map of the extended human MHC. Nat Rev Genet 2004 6.01
10 DNA methylation profiling of the human major histocompatibility complex: a pilot study for the human epigenome project. PLoS Biol 2004 4.96
11 A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data. Bioinformatics 2012 4.95
12 An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs). Genome Res 2008 4.84
13 Germline rates of de novo meiotic deletions and duplications causing several genomic disorders. Nat Genet 2007 4.59
14 Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project. Immunogenetics 2008 4.25
15 The DNA methylome of human peripheral blood mononuclear cells. PLoS Biol 2010 4.25
16 Identification of type 1 diabetes-associated DNA methylation variable positions that precede disease diagnosis. PLoS Genet 2011 3.95
17 Downregulation of death-associated protein kinase 1 (DAPK1) in chronic lymphocytic leukemia. Cell 2007 3.58
18 An epigenetic signature in peripheral blood predicts active ovarian cancer. PLoS One 2009 3.33
19 BLUEPRINT to decode the epigenetic signature written in blood. Nat Biotechnol 2012 3.24
20 A high-resolution linkage-disequilibrium map of the human major histocompatibility complex and first generation of tag single-nucleotide polymorphisms. Am J Hum Genet 2005 2.85
21 Genetic analysis of completely sequenced disease-associated MHC haplotypes identifies shuffling of segments in recent human history. PLoS Genet 2006 2.80
22 Genome-wide DNA methylation analysis for diabetic nephropathy in type 1 diabetes mellitus. BMC Med Genomics 2010 2.34
23 ChAMP: 450k Chip Analysis Methylation Pipeline. Bioinformatics 2013 2.21
24 From genome to epigenome. Hum Mol Genet 2005 2.03
25 Single base-resolution methylome of the silkworm reveals a sparse epigenomic map. Nat Biotechnol 2010 2.03
26 A second major histocompatibility complex susceptibility locus for multiple sclerosis. Ann Neurol 2007 1.99
27 Integrated genetic and epigenetic analysis identifies haplotype-specific methylation in the FTO type 2 diabetes and obesity susceptibility locus. PLoS One 2010 1.93
28 Widespread resetting of DNA methylation in glioblastoma-initiating cells suppresses malignant cellular behavior in a lineage-dependent manner. Genes Dev 2013 1.88
29 Age-associated epigenetic drift: implications, and a case of epigenetic thrift? Hum Mol Genet 2013 1.76
30 Genome-wide DNA methylation analysis of archival formalin-fixed paraffin-embedded tissue using the Illumina Infinium HumanMethylation27 BeadChip. Methods 2010 1.71
31 Methylome analysis using MeDIP-seq with low DNA concentrations. Nat Protoc 2012 1.70
32 Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors. Genome Res 2011 1.60
33 Single haplotype analysis demonstrates rapid evolution of the killer immunoglobulin-like receptor (KIR) loci in primates. Genome Res 2005 1.56
34 Placenta-specific methylation of the vitamin D 24-hydroxylase gene: implications for feedback autoregulation of active vitamin D levels at the fetomaternal interface. J Biol Chem 2009 1.50
35 Somatically acquired hypomethylation of IGF2 in breast and colorectal cancer. Hum Mol Genet 2008 1.47
36 Sites of differential DNA methylation between placenta and peripheral blood: molecular markers for noninvasive prenatal diagnosis of aneuploidies. Am J Pathol 2009 1.46
37 A cluster of ten novel MHC class I related genes on human chromosome 6q24.2-q25.3. Genomics 2002 1.28
38 Identification of a single killer immunoglobulin-like receptor (KIR) gene in the porcine leukocyte receptor complex on chromosome 6q. Immunogenetics 2006 1.26
39 An integrative network algorithm identifies age-associated differential methylation interactome hotspots targeting stem-cell differentiation pathways. Sci Rep 2013 1.26
40 Comparative genomic analysis of two avian (quail and chicken) MHC regions. J Immunol 2004 1.24
41 Plant and animal endemism in the eastern Andean slope: challenges to conservation. BMC Ecol 2012 1.22
42 The human TREM gene cluster at 6p21.1 encodes both activating and inhibitory single IgV domain receptors and includes NKp44. Eur J Immunol 2003 1.22
43 Resources for methylome analysis suitable for gene knockout studies of potential epigenome modifiers. Gigascience 2012 1.22
44 Meta-analysis of IDH-mutant cancers identifies EBF1 as an interaction partner for TET2. Nat Commun 2013 1.21
45 A common variant associated with dyslexia reduces expression of the KIAA0319 gene. PLoS Genet 2009 1.20
46 Inflammatory signalling as mediator of epigenetic modulation in tissue-specific chronic inflammation. Int J Biochem Cell Biol 2008 1.18
47 Future potential of the Human Epigenome Project. Expert Rev Mol Diagn 2004 1.17
48 DNA methylation-mediated down-regulation of DNA methyltransferase-1 (DNMT1) is coincident with, but not essential for, global hypomethylation in human placenta. J Biol Chem 2010 1.15
49 A functional methylome map of ulcerative colitis. Genome Res 2012 1.15
50 Genome-wide age-related changes in DNA methylation and gene expression in human PBMCs. Age (Dordr) 2014 1.12
51 Using high-density DNA methylation arrays to profile copy number alterations. Genome Biol 2014 1.11
52 AutoMeDIP-seq: a high-throughput, whole genome, DNA methylation assay. Methods 2010 1.10
53 Human-specific CpG "beacons" identify loci associated with human-specific traits and disease. Epigenetics 2012 1.07
54 Future impact of integrated high-throughput methylome analyses on human health and disease. J Genet Genomics 2008 1.07
55 A genome-wide survey of Major Histocompatibility Complex (MHC) genes and their paralogues in zebrafish. BMC Genomics 2005 1.06
56 Functional interpretation of non-coding sequence variation: concepts and challenges. Bioessays 2013 1.06
57 A novel system of polymorphic and diverse NK cell receptors in primates. PLoS Genet 2009 1.06
58 Advances in the identification and analysis of allele-specific expression. Genome Med 2009 1.05
59 Different evolutionary histories of the two classical class I genes BF1 and BF2 illustrate drift and selection within the stable MHC haplotypes of chickens. J Immunol 2007 1.05
60 Generation of a genomic tiling array of the human major histocompatibility complex (MHC) and its application for DNA methylation analysis. BMC Med Genomics 2008 1.04
61 MHC-linked and un-linked class I genes in the wallaby. BMC Genomics 2009 1.04
62 The leukocyte receptor complex in chicken is characterized by massive expansion and diversification of immunoglobulin-like Loci. PLoS Genet 2006 1.01
63 Characterization of the chicken C-type lectin-like receptors B-NK and B-lec suggests that the NK complex and the MHC share a common ancestral region. J Immunol 2005 1.01
64 Epigenetic variation and inheritance in mammals. Curr Opin Genet Dev 2006 1.00
65 Identification of the ancestral killer immunoglobulin-like receptor gene in primates. BMC Genomics 2006 0.99
66 Functional regulatory T cells produced by inhibiting cyclic nucleotide phosphodiesterase type 3 prevent allograft rejection. Sci Transl Med 2011 0.99
67 The epigenomic interface between genome and environment in common complex diseases. Brief Funct Genomics 2010 0.96
68 A comparison of tagging methods and their tagging space. Hum Mol Genet 2005 0.96
69 Cancer epigenome. Adv Genet 2010 0.95
70 Physical and transcript map of the region between D6S264 and D6S149 on chromosome 6q27, the minimal region of allele loss in sporadic epithelial ovarian cancer. Oncogene 2002 0.95
71 Glioblastoma Stem Cells Respond to Differentiation Cues but Fail to Undergo Commitment and Terminal Cell-Cycle Arrest. Stem Cell Reports 2015 0.93
72 Recruitment of heterogeneous nuclear ribonucleoprotein A1 in vivo to the LMP/TAP region of the major histocompatibility complex. J Biol Chem 2002 0.92
73 Sequences encoded in the class II region of the MHC related to the 'ABC' superfamily of transporters. 1990. J Immunol 2008 0.91
74 Co-duplication of olfactory receptor and MHC class I genes in the mouse major histocompatibility complex. Hum Mol Genet 2003 0.90
75 Genome-wide screen for differential DNA methylation associated with neural cell differentiation in mouse. PLoS One 2011 0.90
76 Gene body methylation of the dimethylarginine dimethylamino-hydrolase 2 (Ddah2) gene is an epigenetic biomarker for neural stem cell differentiation. Epigenetics 2009 0.89
77 Chicken TAP genes differ from their human orthologues in locus organisation, size, sequence features and polymorphism. Immunogenetics 2005 0.88
78 The tammar wallaby major histocompatibility complex shows evidence of past genomic instability. BMC Genomics 2011 0.88
79 Reconfiguration of genomic anchors upon transcriptional activation of the human major histocompatibility complex. Genome Res 2008 0.88
80 Evolution and comparative analysis of the MHC Class III inflammatory region. BMC Genomics 2006 0.87
81 The human homologue of unc-93 maps to chromosome 6q27 - characterisation and analysis in sporadic epithelial ovarian cancer. BMC Genet 2002 0.86
82 Complex transcription and splicing of odorant receptor genes. J Biol Chem 2003 0.85
83 Evolutionary vignettes of natural killer cell receptors. Curr Opin Immunol 2007 0.85
84 Sequencing and comparative analysis of the gorilla MHC genomic sequence. Database (Oxford) 2013 0.85
85 Methylome analysis identifies a Wilms tumor epigenetic biomarker detectable in blood. Genome Biol 2014 0.85
86 The good, the bad and the ugly: epigenetic mechanisms in glioblastoma. Mol Aspects Med 2012 0.84
87 Integrated virus-host methylome analysis in head and neck squamous cell carcinoma. Epigenetics 2013 0.84
88 Replication of the association of HLA-B7 with Alzheimer's disease: a role for homozygosity? J Neuroinflammation 2006 0.80
89 Immunogenomics: molecular hide and seek. Hum Genomics 2006 0.79
90 Preview. A shore sign of reprogramming. Cell Stem Cell 2009 0.78
91 Human-specific CpG 'beacons' identify human-specific prefrontal cortex H3K4me3 chromatin peaks. Epigenomics 2014 0.78
92 Comments on: Interpretation of genome-wide infinium methylation data from ligated DNA in formalin-fixed paraffin-embedded paired tumor and normal tissue. BMC Res Notes 2012 0.78
93 Association of smoking behavior with an odorant receptor allele telomeric to the human major histocompatibility complex. Genet Test 2008 0.78
94 Isolation and characterization of 10 MHC Class I-associated microsatellite loci in tammar wallaby (Macropus eugenii). Mol Ecol Resour 2009 0.77
95 A-Z of methylome analysis. Methods 2010 0.77
96 Mucosal transcriptomics implicates under expression of BRINP3 in the pathogenesis of ulcerative colitis. Inflamm Bowel Dis 2014 0.77
97 High levels of genetic variation at MHC class II DBB loci in the tammar wallaby (Macropus eugenii). Immunogenetics 2008 0.77
98 Bolivianine, a new sesterpene with an unusual skeleton from Hedyosmum angustifolium, and its isomer, isobolivianine. Org Lett 2007 0.75
99 Replication timing profile reflects the distinct functional and genomic features of the MHC class II region. Cell Cycle 2007 0.75
100 Efficient Hybrid Image Warping for High Frame-Rate Stereoscopic Rendering. IEEE Trans Vis Comput Graph 2017 0.75
101 Anti-leishmanial lindenane sesquiterpenes from Hedyosmum angustifolium. Planta Med 2009 0.75
102 Accessing HLA sequencing data through the 6ace database. Methods Mol Biol 2003 0.75
103 Dr Nat Bumstead: pioneer researcher in mapping the chicken genome. DNA Seq 2004 0.75