Published in Trends Genet on August 08, 2012
Adenylation of maternally inherited microRNAs by Wispy. Mol Cell (2014) 1.63
bacterial infection drives the expression dynamics of microRNAs and their isomiRs. PLoS Genet (2015) 1.50
5' isomiR variation is of functional and evolutionary importance. Nucleic Acids Res (2014) 1.28
Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection. PLoS One (2013) 1.07
miRBase Tracker: keeping track of microRNA annotation changes. Database (Oxford) (2014) 1.06
A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome. Annu Rev Genet (2015) 1.02
IsomiRage: From Functional Classification to Differential Expression of miRNA Isoforms. Front Bioeng Biotechnol (2014) 1.00
Beta cell 5'-shifted isomiRs are candidate regulatory hubs in type 2 diabetes. PLoS One (2013) 0.99
A Review of Computational Tools in microRNA Discovery. Front Genet (2013) 0.98
MIR137 variants identified in psychiatric patients affect synaptogenesis and neuronal transmission gene sets. Mol Psychiatry (2014) 0.94
miRNAs regulated by estrogens, tamoxifen, and endocrine disruptors and their downstream gene targets. Mol Cell Endocrinol (2015) 0.94
Characterization of phosphorus-regulated miR399 and miR827 and their isomirs in barley under phosphorus-sufficient and phosphorus-deficient conditions. BMC Plant Biol (2013) 0.94
Integrated mRNA and microRNA transcriptome sequencing characterizes sequence variants and mRNA-microRNA regulatory network in nasopharyngeal carcinoma model systems. FEBS Open Bio (2014) 0.93
MicroRNA-related sequence variations in human cancers. Hum Genet (2013) 0.93
MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by abscisic acid by alternative splicing in roots of Arabidopsis. Plant Mol Biol (2013) 0.92
KRAS-dependent sorting of miRNA to exosomes. Elife (2015) 0.91
The panorama of miRNA-mediated mechanisms in mammalian cells. Cell Mol Life Sci (2014) 0.90
Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage. Plant Physiol (2013) 0.89
Inhibition of proliferation and induction of autophagy by atorvastatin in PC3 prostate cancer cells correlate with downregulation of Bcl2 and upregulation of miR-182 and p21. PLoS One (2013) 0.89
The mystery of let-7d - a small RNA with great power. Contemp Oncol (Pozn) (2014) 0.89
miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants. Trends Genet (2015) 0.88
Deciphering the RNA landscape by RNAome sequencing. RNA Biol (2015) 0.88
Polymorphisms in MicroRNAs are associated with survival in non-small cell lung cancer. Cancer Epidemiol Biomarkers Prev (2014) 0.88
Epigenetic mechanisms of endothelial dysfunction in type 2 diabetes. Clin Epigenetics (2015) 0.88
Impact of age-associated increase in 2'-O-methylation of miRNAs on aging and neurodegeneration in Drosophila. Genes Dev (2014) 0.88
Regulation of huntingtin gene expression by miRNA-137, -214, -148a, and their respective isomiRs. Int J Mol Sci (2013) 0.88
Genetic variants in microRNA genes: impact on microRNA expression, function, and disease. Front Genet (2015) 0.87
An exploration of evolution, maturation, expression and function relationships in mir-23 ∼ 27 ∼ 24 cluster. PLoS One (2014) 0.87
The exonuclease Nibbler regulates age-associated traits and modulates piRNA length in Drosophila. Aging Cell (2015) 0.87
A meta-analysis revealed insights into the sources, conservation and impact of microRNA 5'-isoforms in four model species. Nucleic Acids Res (2013) 0.87
Complexity of microRNA function and the role of isomiRs in lipid homeostasis. J Lipid Res (2013) 0.86
miR-isomiRExp: a web-server for the analysis of expression of miRNA at the miRNA/isomiR levels. Sci Rep (2016) 0.86
MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection. BMC Genomics (2015) 0.86
Non‑invasive prostate cancer detection by measuring miRNA variants (isomiRs) in urine extracellular vesicles. Oncotarget (2016) 0.86
A network-biology perspective of microRNA function and dysfunction in cancer. Nat Rev Genet (2016) 0.85
Sequence features of Drosha and Dicer cleavage sites affect the complexity of isomiRs. Int J Mol Sci (2015) 0.84
Performance comparison of digital microRNA profiling technologies applied on human breast cancer cell lines. PLoS One (2013) 0.84
p53 shapes genome-wide and cell type-specific changes in microRNA expression during the human DNA damage response. Cell Cycle (2014) 0.84
Nucleotide sequence of miRNA precursor contributes to cleavage site selection by Dicer. Nucleic Acids Res (2015) 0.83
OxymiRs in cutaneous development, wound repair and regeneration. Semin Cell Dev Biol (2012) 0.83
MicroRNAs in normal and psoriatic skin. Physiol Genomics (2013) 0.82
An efficient and sensitive method for preparing cDNA libraries from scarce biological samples. Nucleic Acids Res (2014) 0.81
3' IsomiR species and DNA contamination influence reliable quantification of microRNAs by stem-loop quantitative PCR. PLoS One (2014) 0.81
New global analysis of the microRNA transcriptome of primary tumors and lymph node metastases of papillary thyroid cancer. BMC Genomics (2015) 0.80
Evolutionary and expression analysis of miR-#-5p and miR-#-3p at the miRNAs/isomiRs levels. Biomed Res Int (2015) 0.80
Mini but mighty: microRNAs in the pathobiology of periodontal disease. Periodontol 2000 (2015) 0.80
Comprehensive analysis of small RNA-seq data reveals that combination of miRNA with its isomiRs increase the accuracy of target prediction in Arabidopsis thaliana. RNA Biol (2014) 0.80
The DNA damage response: the omics era and its impact. DNA Repair (Amst) (2014) 0.80
Degradation dynamics of microRNAs revealed by a novel pulse-chase approach. Genome Res (2016) 0.80
The highly expressed 5'isomiR of hsa-miR-140-3p contributes to the tumor-suppressive effects of miR-140 by reducing breast cancer proliferation and migration. BMC Genomics (2016) 0.79
Dumbbell-PCR: a method to quantify specific small RNA variants with a single nucleotide resolution at terminal sequences. Nucleic Acids Res (2015) 0.79
High-resolution analysis of the human retina miRNome reveals isomiR variations and novel microRNAs. Nucleic Acids Res (2016) 0.79
Small RNA Sequencing Uncovers New miRNAs and moRNAs Differentially Expressed in Normal and Primary Myelofibrosis CD34+ Cells. PLoS One (2015) 0.79
Microevolution of nematode miRNAs reveals diverse modes of selection. Genome Biol Evol (2014) 0.79
Hypermethylation and down-regulation of DLEU2 in paediatric acute myeloid leukaemia independent of embedded tumour suppressor miR-15a/16-1. Mol Cancer (2014) 0.78
Circulating miRNAs: Potential Novel Biomarkers for Hepatopathology Progression and Diagnosis of Schistosomiasis Japonica in Two Murine Models. PLoS Negl Trop Dis (2015) 0.78
miRVaS: a tool to predict the impact of genetic variants on miRNAs. Nucleic Acids Res (2015) 0.78
A Comprehensive Analysis of miRNA/isomiR Expression with Gender Difference. PLoS One (2016) 0.78
Identification and characterization of novel and conserved microRNAs in several tissues of the Chinese rare minnow (Gobiocypris rarus) based on illumina deep sequencing technology. BMC Genomics (2016) 0.78
Sources of individual variability: miRNAs that predispose to neuropathic pain identified using genome-wide sequencing. Mol Pain (2014) 0.78
Understanding microRNA-mediated gene regulatory networks through mathematical modelling. Nucleic Acids Res (2016) 0.78
DeAnnIso: a tool for online detection and annotation of isomiRs from small RNA sequencing data. Nucleic Acids Res (2016) 0.78
Expression of microRNAs and isomiRs in the porcine endometrium: implications for gene regulation at the maternal-conceptus interface. BMC Genomics (2015) 0.78
A novel microRNA located in TrkC gene regulates Wnt signaling pathway and is differentially expressed in colorectal cancer specimens. J Biol Chem (2017) 0.78
isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation. BMC Bioinformatics (2016) 0.78
Identification of General and Heart-Specific miRNAs in Sheep (Ovis aries). PLoS One (2015) 0.77
Highly sensitive sequencing reveals dynamic modifications and activities of small RNAs in mouse oocytes and early embryos. Sci Adv (2016) 0.77
Entropy-based model for miRNA isoform analysis. PLoS One (2015) 0.77
Unravelling the complexity of microRNA-mediated gene regulation in black pepper (Piper nigrum L.) using high-throughput small RNA profiling. Plant Cell Rep (2015) 0.77
Unveiling the Micronome of Cassava (Manihot esculenta Crantz). PLoS One (2016) 0.77
Dengue virus infection alters post-transcriptional modification of microRNAs in the mosquito vector Aedes aegypti. Sci Rep (2015) 0.77
isomiRs: Increasing Evidences of isomiRs Complexity in Plant Stress Functional Biology. Front Plant Sci (2015) 0.77
Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow. Nucleic Acids Res (2016) 0.77
MicroRNA precursors are not structurally robust but plastic. Genome Biol Evol (2013) 0.77
Identification and characterization of microRNAs from tree peony (Paeonia ostii) and their response to copper stress. PLoS One (2015) 0.77
Bioinformatic Interrogation of 5p-arm and 3p-arm Specific miRNA Expression Using TCGA Datasets. J Clin Med (2015) 0.77
Genetic analysis of loop sequences in the let-7 gene family reveal a relationship between loop evolution and multiple isomiRs. PLoS One (2014) 0.76
Role of bioinformatics in establishing microRNAs as modulators of abiotic stress responses: the new revolution. Front Physiol (2015) 0.76
miRNAs Regulation and Its Role as Biomarkers in Endometriosis. Int J Mol Sci (2016) 0.76
Integrating full spectrum of sequence features into predicting functional microRNA-mRNA interactions. Bioinformatics (2015) 0.76
Identification and conformational analysis of putative microRNAs in Maruca vitrata (Lepidoptera: Pyralidae). Appl Transl Genom (2015) 0.76
Circulating microRNAs as Potential Biomarkers of Infectious Disease. Front Immunol (2017) 0.75
isomiR2Function: An Integrated Workflow for Identifying MicroRNA Variants in Plants. Front Plant Sci (2017) 0.75
Small Non-coding RNAs Associated with Viral Infectious Diseases of Veterinary Importance: Potential Clinical Applications. Front Vet Sci (2016) 0.75
Comprehensive profiling of functional Epstein-Barr virus miRNA expression in human cell lines. BMC Genomics (2016) 0.75
Visual Display of 5p-arm and 3p-arm miRNA Expression with a Mobile Application. Biomed Res Int (2017) 0.75
Characterizing isomiR variants within the microRNA-34/449 family. FEBS Lett (2017) 0.75
Regulation of miRNA processing and miRNA mediated gene repression in cancer. Microrna (2014) 0.75
Differential processing of small RNAs during endoplasmic reticulum stress. Sci Rep (2017) 0.75
IsomiR expression patterns in canonical and Dicer‑independent microRNAs. Mol Med Rep (2017) 0.75
High-throughput sequencing and degradome analysis reveal altered expression of miRNAs and their targets in a male-sterile cybrid pummelo (Citrus grandis). BMC Genomics (2016) 0.75
MicroRNA Expression during Bovine Oocyte Maturation and Fertilization. Int J Mol Sci (2016) 0.75
Polymorphisms in miRNA genes and their involvement in autoimmune diseases susceptibility. Immunol Res (2017) 0.75
Comprehensive miRNA expression profiling in human T-cell acute lymphoblastic leukemia by small RNA-sequencing. Sci Rep (2017) 0.75
MicroRNAs in Heart Failure, Cardiac Transplantation, and Myocardial Recovery: Biomarkers with Therapeutic Potential. Curr Heart Fail Rep (2017) 0.75
Toward the human cellular microRNAome. Genome Res (2017) 0.75
In Silico Analysis of Small RNAs Suggest Roles for Novel and Conserved miRNAs in the Formation of Epigenetic Memory in Somatic Embryos of Norway Spruce. Front Physiol (2017) 0.75
The miR-200 family and miR-205 regulate epithelial to mesenchymal transition by targeting ZEB1 and SIP1. Nat Cell Biol (2008) 24.27
A double-negative feedback loop between ZEB1-SIP1 and the microRNA-200 family regulates epithelial-mesenchymal transition. Cancer Res (2008) 7.45
MicroRNAs as regulators of epithelial-mesenchymal transition. Cell Cycle (2008) 4.81
Contextual extracellular cues promote tumor cell EMT and metastasis by regulating miR-200 family expression. Genes Dev (2009) 3.58
Experimental strategies for microRNA target identification. Nucleic Acids Res (2011) 3.00
The human mitochondrial transcriptome. Cell (2011) 2.70
Hypoxia-inducible factor-1alpha mRNA contains an internal ribosome entry site that allows efficient translation during normoxia and hypoxia. Mol Biol Cell (2002) 2.61
An autocrine TGF-beta/ZEB/miR-200 signaling network regulates establishment and maintenance of epithelial-mesenchymal transition. Mol Biol Cell (2011) 2.49
E-cadherin expression is regulated by miR-192/215 by a mechanism that is independent of the profibrotic effects of transforming growth factor-beta. Diabetes (2010) 1.85
SNIP1 is a candidate modifier of the transcriptional activity of c-Myc on E box-dependent target genes. Mol Cell (2006) 1.73
The Notch ligand Jagged2 promotes lung adenocarcinoma metastasis through a miR-200-dependent pathway in mice. J Clin Invest (2011) 1.59
Assessing IRES activity in the HIF-1alpha and other cellular 5' UTRs. RNA (2006) 1.45
The microRNA-200 family regulates epithelial to mesenchymal transition. ScientificWorldJournal (2008) 1.44
Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome. Genome Res (2010) 1.32
Human PABP binds AU-rich RNA via RNA-binding domains 3 and 4. Eur J Biochem (2004) 1.31
ZEB1 drives prometastatic actin cytoskeletal remodeling by downregulating miR-34a expression. J Clin Invest (2012) 1.29
Identifying functional miRNA-mRNA regulatory modules with correspondence latent dirichlet allocation. Bioinformatics (2010) 1.28
Genome-wide identification of human FOXP3 target genes in natural regulatory T cells. J Immunol (2010) 1.28
Down-regulation of the miRNA-200 family at the invasive front of colorectal cancers with degraded basement membrane indicates EMT is involved in cancer progression. Neoplasia (2013) 1.25
On measuring miRNAs after transient transfection of mimics or antisense inhibitors. PLoS One (2013) 1.24
Global analysis of the mammalian RNA degradome reveals widespread miRNA-dependent and miRNA-independent endonucleolytic cleavage. Nucleic Acids Res (2011) 1.24
Epigenetic modulation of the miR-200 family is associated with transition to a breast cancer stem-cell-like state. J Cell Sci (2013) 1.24
MiRNA-205 modulates cellular invasion and migration via regulating zinc finger E-box binding homeobox 2 expression in esophageal squamous cell carcinoma cells. J Transl Med (2011) 1.22
Myc-modulated miR-9 makes more metastases. Nat Cell Biol (2010) 1.22
microRNAs and EMT in mammary cells and breast cancer. J Mammary Gland Biol Neoplasia (2010) 1.14
Axl mediates acquired resistance of head and neck cancer cells to the epidermal growth factor receptor inhibitor erlotinib. Mol Cancer Ther (2013) 1.14
A multi-protein complex containing cold shock domain (Y-box) and polypyrimidine tract binding proteins forms on the vascular endothelial growth factor mRNA. Potential role in mRNA stabilization. Eur J Biochem (2004) 1.13
Exploring complex miRNA-mRNA interactions with Bayesian networks by splitting-averaging strategy. BMC Bioinformatics (2009) 1.13
Reversal and prevention of arsenic-induced human bronchial epithelial cell malignant transformation by microRNA-200b. Toxicol Sci (2011) 1.09
A vascular cell-restricted RhoGAP, p73RhoGAP, is a key regulator of angiogenesis. Proc Natl Acad Sci U S A (2004) 1.04
Induction of miR-21 by retinoic acid in estrogen receptor-positive breast carcinoma cells: biological correlates and molecular targets. J Biol Chem (2010) 1.01
Expression profiling of a hemopoietic cell survival transcriptome implicates osteopontin as a functional prognostic factor in AML. Blood (2009) 0.97
Specificity protein 1 (Sp1) maintains basal epithelial expression of the miR-200 family: implications for epithelial-mesenchymal transition. J Biol Chem (2014) 0.94
Phosphorylation of cold shock domain/Y-box proteins by ERK2 and GSK3beta and repression of the human VEGF promoter. FEBS Lett (2005) 0.94
Inferring microRNA and transcription factor regulatory networks in heterogeneous data. BMC Bioinformatics (2013) 0.93
Genetic regulators of myelopoiesis and leukemic signaling identified by gene profiling and linear modeling. J Leukoc Biol (2006) 0.92
Inferring microRNA-mRNA causal regulatory relationships from expression data. Bioinformatics (2013) 0.92
Over-expression of cathepsin E and trefoil factor 1 in sessile serrated adenomas of the colorectum identified by gene expression analysis. Virchows Arch (2009) 0.90
Attenuation of leakiness in doxycycline-inducible expression via incorporation of 3' AU-rich mRNA destabilizing elements. Biotechniques (2008) 0.86
A novel mechanism of repression of the vascular endothelial growth factor promoter, by single strand DNA binding cold shock domain (Y-box) proteins in normoxic fibroblasts. Nucleic Acids Res (2002) 0.85
Regulation of vascular leak and recovery from ischemic injury by general and VE-cadherin-restricted miRNA antagonists of miR-27. Blood (2013) 0.84
Identification of an enhancer that increases miR-200b~200a~429 gene expression in breast cancer cells. PLoS One (2013) 0.82
Matrigel basement membrane matrix influences expression of microRNAs in cancer cell lines. Biochem Biophys Res Commun (2012) 0.82
Understanding principles of miRNA target recognition and function through integrated biological and bioinformatics approaches. Wiley Interdiscip Rev RNA (2014) 0.81
Stromal miR-320 keeps an oncogenic secretome in check. Nat Cell Biol (2012) 0.79
Hormonally regulated follicle differentiation and luteinization in the mouse is associated with hypoxia inducible factor activity. Mol Cell Endocrinol (2010) 0.79
Meeting report: Barossa 2005--Signaling Networks. Sci STKE (2006) 0.78
A microRNA that limits metastatic colonisation and endothelial recruitment. EMBO J (2012) 0.76
Science amongst the vines. Meeting on signalling systems. EMBO Rep (2008) 0.75
Discovering functional microRNA-mRNA regulatory modules in heterogeneous data. Adv Exp Med Biol (2013) 0.75