Fluorescence correlation spectroscopy measurements of the membrane protein TetA in Escherichia coli suggest rapid diffusion at short length scales.

PubWeight™: 0.82‹?›

🔗 View Article (PMC 3485324)

Published in PLoS One on October 31, 2012

Authors

David Chow1, Lin Guo, Feng Gai, Mark Goulian

Author Affiliations

1: Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.

Articles cited by this

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A (2000) 96.90

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol (2006) 40.15

The fluid mosaic model of the structure of cell membranes. Science (1972) 37.43

Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu. J Mol Biol (1976) 33.01

Lipid rafts and signal transduction. Nat Rev Mol Cell Biol (2000) 25.87

Phospholipids undergo hop diffusion in compartmentalized cell membrane. J Cell Biol (2002) 6.73

An ultrasensitive bacterial motor revealed by monitoring signaling proteins in single cells. Science (2000) 6.66

Protein mobility in the cytoplasm of Escherichia coli. J Bacteriol (1999) 5.94

Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria. J Bacteriol (2001) 5.87

Four-helical-bundle structure of the cytoplasmic domain of a serine chemotaxis receptor. Nature (1999) 5.38

Fluorescence correlation spectroscopy with single-molecule sensitivity on cell and model membranes. Cytometry (1999) 4.98

Dynamics of fluorescence fluctuations in green fluorescent protein observed by fluorescence correlation spectroscopy. Proc Natl Acad Sci U S A (1998) 4.72

Collaborative signaling by mixed chemoreceptor teams in Escherichia coli. Proc Natl Acad Sci U S A (2002) 4.64

Fluorescence correlation spectroscopy reveals fast optical excitation-driven intramolecular dynamics of yellow fluorescent proteins. Proc Natl Acad Sci U S A (2000) 3.29

Dynamic molecular confinement in the plasma membrane by microdomains and the cytoskeleton meshwork. EMBO J (2006) 2.87

Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12. J Bacteriol (2009) 2.51

Rapid lateral diffusion of phospholipids in rabbit sarcoplasmic reticulum. Proc Natl Acad Sci U S A (1972) 2.39

Shrinking patches and slippery rafts: scales of domains in the plasma membrane. Trends Cell Biol (2001) 2.23

Diffusion of green fluorescent protein in three cell environments in Escherichia coli. J Bacteriol (2006) 1.92

Evidence that subcellular localization of a bacterial membrane protein is achieved by diffusion and capture. Proc Natl Acad Sci U S A (2002) 1.81

Visualization of the movement of single histidine kinase molecules in live Caulobacter cells. Proc Natl Acad Sci U S A (2004) 1.78

Complex spatial distribution and dynamics of an abundant Escherichia coli outer membrane protein, LamB. Mol Microbiol (2004) 1.66

Lateral diffusion of membrane proteins. J Am Chem Soc (2009) 1.65

Receptor activation and homer differentially control the lateral mobility of metabotropic glutamate receptor 5 in the neuronal membrane. J Neurosci (2002) 1.56

Lateral diffusion rates of lipid, water, and a hydrophobic drug in a multilamellar liposome. Biophys J (2003) 1.50

Mobility of cytoplasmic, membrane, and DNA-binding proteins in Escherichia coli. Biophys J (2010) 1.45

Tracking microdomain dynamics in cell membranes. Biochim Biophys Acta (2008) 1.40

Methods to measure the lateral diffusion of membrane lipids and proteins. Methods (2006) 1.39

Membrane mobility and microdomain association of the dopamine transporter studied with fluorescence correlation spectroscopy and fluorescence recovery after photobleaching. Biochemistry (2007) 1.37

Lateral diffusion of lipids in model and natural membranes. Prog Lipid Res (1994) 1.35

The motion of a single molecule, the lambda-receptor, in the bacterial outer membrane. Biophys J (2002) 1.31

Optimized Nile Red efflux assay of AcrAB-TolC multidrug efflux system shows competition between substrates. Antimicrob Agents Chemother (2010) 1.30

Mobility of Min-proteins in Escherichia coli measured by fluorescence correlation spectroscopy. Phys Biol (2006) 1.23

Continuous control in bacterial regulatory circuits. J Bacteriol (2004) 1.22

Aurora B dynamics at centromeres create a diffusion-based phosphorylation gradient. J Cell Biol (2011) 1.21

Imaging OmpR localization in Escherichia coli. Mol Microbiol (2006) 1.21

Mobility of BtuB and OmpF in the Escherichia coli outer membrane: implications for dynamic formation of a translocon complex. Biophys J (2010) 1.08

Fluorescence correlation spectroscopy in membrane structure elucidation. Biochim Biophys Acta (2008) 1.07

Fluorescence correlation spectroscopy for the study of membrane dynamics and protein/lipid interactions. Methods (2008) 1.06

Single molecule studies of molecular diffusion in cellular membranes: determining membrane structure. Biopolymers (2007) 0.93

Lateral diffusion of membrane proteins: consequences of hydrophobic mismatch and lipid composition. Biophys J (2010) 0.93

Lateral diffusion of lipopolysaccharide in the outer membrane of Salmonella typhimurium. Nature (1980) 0.93

How to quantify protein diffusion in the bacterial membrane. Biopolymers (2011) 0.90

Fluorescence correlation spectroscopic study of serpin depolymerization by computationally designed peptides. J Mol Biol (2007) 0.85

Heterogeneous and anomalous diffusion inside lipid tubules. J Phys Chem B (2007) 0.84

In vivo lipid diffusion coefficient measurements in rat bone marrow. Magn Reson Imaging (2009) 0.82

Photoinduced electron transfer and fluorophore motion as a probe of the conformational dynamics of membrane proteins: application to the influenza a M2 proton channel. Langmuir (2011) 0.81

Diffusion as a probe of the heterogeneity of antimicrobial peptide-membrane interactions. Biochemistry (2010) 0.80

Confined diffusion in tubular structures analyzed by fluorescence correlation spectroscopy on a mirror. Appl Opt (2006) 0.80

Evaluation of pulsed-FRAP and conventional-FRAP for determination of protein mobility in prokaryotic cells. PLoS One (2011) 0.79

Articles by these authors

A syntaxin 1, Galpha(o), and N-type calcium channel complex at a presynaptic nerve terminal: analysis by quantitative immunocolocalization. J Neurosci (2004) 4.84

Rewiring the specificity of two-component signal transduction systems. Cell (2008) 4.80

Specificity in two-component signal transduction pathways. Annu Rev Genet (2007) 4.79

Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells. Mol Microbiol (2012) 2.80

Robustness and the cycle of phosphorylation and dephosphorylation in a two-component regulatory system. Proc Natl Acad Sci U S A (2003) 2.59

H3K9 methylation is a barrier during somatic cell reprogramming into iPSCs. Nat Genet (2012) 2.47

Helix formation via conformation diffusion search. Proc Natl Acad Sci U S A (2002) 2.34

Using nitrile-derivatized amino acids as infrared probes of local environment. J Am Chem Soc (2003) 2.30

Treatment of early stage osteonecrosis of the femoral head with autologous implantation of bone marrow-derived and cultured mesenchymal stem cells. Bone (2011) 1.79

The Escherichia coli CpxA-CpxR envelope stress response system regulates expression of the porins ompF and ompC. J Bacteriol (2005) 1.68

Evolving a robust signal transduction pathway from weak cross-talk. Mol Syst Biol (2010) 1.64

Mucosal penetration primes Vibrio cholerae for host colonization by repressing quorum sensing. Proc Natl Acad Sci U S A (2008) 1.63

Ultrafast folding of alpha3D: a de novo designed three-helix bundle protein. Proc Natl Acad Sci U S A (2003) 1.57

A new method for determining the local environment and orientation of individual side chains of membrane-binding peptides. J Am Chem Soc (2004) 1.51

Vitamin C modulates TET1 function during somatic cell reprogramming. Nat Genet (2013) 1.45

Proteomics of the Autographa californica nucleopolyhedrovirus budded virions. J Virol (2010) 1.44

Decreased analgesic effect of morphine, but not buprenorphine, in patients with advanced P-glycoprotein(+) cancers. Pharmacol Rep (2012) 1.44

Changes of serum omentin-1 levels in normal subjects and in patients with impaired glucose regulation and with newly diagnosed and untreated type 2 diabetes. Diabetes Res Clin Pract (2010) 1.42

Cross-talk suppression between the CpxA-CpxR and EnvZ-OmpR two-component systems in E. coli. Mol Microbiol (2008) 1.42

Feedback inhibition in the PhoQ/PhoP signaling system by a membrane peptide. PLoS Genet (2009) 1.40

Cholesterol-dependent phase separation in cell-derived giant plasma-membrane vesicles. Biochem J (2009) 1.40

Understanding the key factors that control the rate of beta-hairpin folding. Proc Natl Acad Sci U S A (2004) 1.40

Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy. Proc Natl Acad Sci U S A (2004) 1.39

Site-Specific Spectroscopic Reporters of the Local Electric Field, Hydration, Structure, and Dynamics of Biomolecules. J Phys Chem Lett (2011) 1.36

CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize. Genome Res (2012) 1.36

Conformational distribution of a 14-residue peptide in solution: a fluorescence resonance energy transfer study. J Phys Chem B (2005) 1.35

Generation of CRISPR/Cas9-mediated gene-targeted pigs via somatic cell nuclear transfer. Cell Mol Life Sci (2014) 1.28

A novel fluorescent probe for protein binding and folding studies: p-cyano-phenylalanine. Biopolymers (2006) 1.27

Ultrafast folding of a computationally designed Trp-cage mutant: Trp2-cage. J Phys Chem B (2006) 1.26

Spreading of heterochromatin is limited to specific families of maize retrotransposons. PLoS Genet (2012) 1.25

High stimulus unmasks positive feedback in an autoregulated bacterial signaling circuit. Proc Natl Acad Sci U S A (2008) 1.24

Probing the folding transition state structure of the villin headpiece subdomain via side chain and backbone mutagenesis. J Am Chem Soc (2009) 1.23

Stimulus-dependent differential regulation in the Escherichia coli PhoQ PhoP system. Proc Natl Acad Sci U S A (2007) 1.22

Continuous control in bacterial regulatory circuits. J Bacteriol (2004) 1.22

Imaging OmpR localization in Escherichia coli. Mol Microbiol (2006) 1.21

Infrared study of the effect of hydration on the amide I band and aggregation properties of helical peptides. J Phys Chem B (2007) 1.21

Site-specific hydration status of an amphipathic peptide in AOT reverse micelles. Langmuir (2007) 1.21

5-Cyanotryptophan as an Infrared Probe of Local Hydration Status of Proteins. Chem Phys Lett (2009) 1.21

Spatially resolved total internal reflection fluorescence correlation microscopy using an electron multiplying charge-coupled device camera. Anal Chem (2007) 1.20

Rational optimization of reprogramming culture conditions for the generation of induced pluripotent stem cells with ultra-high efficiency and fast kinetics. Cell Res (2011) 1.19

Using an amino acid fluorescence resonance energy transfer pair to probe protein unfolding: application to the villin headpiece subdomain and the LysM domain. Biochemistry (2008) 1.18

A mutant CHS3 protein with TIR-NB-LRR-LIM domains modulates growth, cell death and freezing tolerance in a temperature-dependent manner in Arabidopsis. Plant J (2010) 1.17

The Two Dimensional Vibrational Echo of a Nitrile Probe of the Villin HP35 Protein. J Phys Chem Lett (2010) 1.15

Divalent cation-induced cluster formation by polyphosphoinositides in model membranes. J Am Chem Soc (2012) 1.14

Transmembrane orientation and possible role of the fusogenic peptide from parainfluenza virus 5 (PIV5) in promoting fusion. Proc Natl Acad Sci U S A (2011) 1.14

Effect of dehydration on the aggregation kinetics of two amyloid peptides. J Phys Chem B (2009) 1.14

Infrared study of the stability and folding kinetics of a 15-residue beta-hairpin. J Am Chem Soc (2003) 1.12

Targeted Removal of Bioavailable Metal as a Detoxification Strategy for Carbon Nanotubes. Carbon N Y (2008) 1.12

Membrane protein expression triggers chromosomal locus repositioning in bacteria. Proc Natl Acad Sci U S A (2012) 1.11

HNF factors form a network to regulate liver-enriched genes in zebrafish. Dev Biol (2006) 1.11

Changing the specificity of a bacterial chemoreceptor. J Mol Biol (2005) 1.10

Spectroscopic studies of protein folding: linear and nonlinear methods. Protein Sci (2011) 1.10

Mypt1-mediated spatial positioning of Bmp2-producing cells is essential for liver organogenesis. Development (2008) 1.10

Using two fluorescent probes to dissect the binding, insertion, and dimerization kinetics of a model membrane peptide. J Am Chem Soc (2009) 1.09

Nanosecond folding dynamics of a three-stranded beta-sheet. J Am Chem Soc (2006) 1.09

Preparation and anti-tumor efficiency evaluation of doxorubicin-loaded bacterial magnetosomes: magnetic nanoparticles as drug carriers isolated from Magnetospirillum gryphiswaldense. Biotechnol Bioeng (2008) 1.08

Folding kinetics of a naturally occurring helical peptide: implication of the folding speed limit of helical proteins. J Phys Chem B (2008) 1.08

Probing the kinetics of membrane-mediated helix folding. J Phys Chem B (2006) 1.08

Role of helix nucleation in the kinetics of binding of mastoparan X to phospholipid bilayers. Biochemistry (2007) 1.08

F1C fimbriae play an important role in biofilm formation and intestinal colonization by the Escherichia coli commensal strain Nissle 1917. Appl Environ Microbiol (2008) 1.08

Effect of macromolecular crowding on protein folding dynamics at the secondary structure level. J Mol Biol (2009) 1.07

Understanding the mechanism of beta-hairpin folding via phi-value analysis. Biochemistry (2006) 1.06

Limitations of yeast surface display in engineering proteins of high thermostability. Protein Eng Des Sel (2006) 1.06

Human epididymis protein 4 (HE4) plays a key role in ovarian cancer cell adhesion and motility. Biochem Biophys Res Commun (2012) 1.06

Substrate specificity and inducibility of TACE (tumour necrosis factor alpha-converting enzyme) revisited: the Ala-Val preference, and induced intrinsic activity. Biochem Soc Symp (2003) 1.05

Achieving secondary structural resolution in kinetic measurements of protein folding: a case study of the folding mechanism of Trp-cage. Angew Chem Int Ed Engl (2011) 1.05

Comparative proteomics reveal fundamental structural and functional differences between the two progeny phenotypes of a baculovirus. J Virol (2012) 1.04

Proteomics analysis of Helicoverpa armigera single nucleocapsid nucleopolyhedrovirus identified two new occlusion-derived virus-associated proteins, HA44 and HA100. J Virol (2007) 1.04

Molecular diversity of toxic components from the scorpion Heterometrus petersii venom revealed by proteomic and transcriptome analysis. Proteomics (2010) 1.04

Enhanced microwave absorption property of reduced graphene oxide (RGO)-MnFe2O4 nanocomposites and polyvinylidene fluoride. ACS Appl Mater Interfaces (2014) 1.02

Changes in the status of hospitalized stroke patients since inception of the prospective payment system in 1983. Arch Phys Med Rehabil (2002) 1.02

Single-cell analysis of gene expression by fluorescence microscopy. Methods Enzymol (2007) 1.01

Tuning the cooperativity of the helix-coil transition by aqueous reverse micelles. J Phys Chem B (2006) 1.01

Crowded cell-like environment accelerates the nucleation step of amyloidogenic protein misfolding. J Biol Chem (2009) 1.01

Microphthalmia resulting from MSX2-induced apoptosis in the optic vesicle. Invest Ophthalmol Vis Sci (2003) 0.99

Photophysics of a Fluorescent Non-natural Amino Acid: p-Cyanophenylalanine. Chem Phys Lett (2010) 0.99

Diffusion, transport, and cell membrane organization investigated by imaging fluorescence cross-correlation spectroscopy. Biophys J (2009) 0.97

SUMOylation-regulated protein phosphorylation, evidence from quantitative phosphoproteomics analyses. J Biol Chem (2011) 0.97

Dissecting the membrane binding and insertion kinetics of a pHLIP peptide. Biochemistry (2008) 0.97

Alpha 1-antitrypsin polymerization: a fluorescence correlation spectroscopic study. Biochemistry (2005) 0.97

Identification and functional analysis of a novel cyclin e/cdk2 substrate ankrd17. J Biol Chem (2009) 0.97

Arthroscopically assisted treatment for Schatzker type I-V tibial plateau fractures. Chin J Traumatol (2008) 0.96

Site-specific infrared probes of proteins. Annu Rev Phys Chem (2015) 0.96

Selective incorporation of nitrile-based infrared probes into proteins via cysteine alkylation. Biochemistry (2010) 0.95

Direct assessment of the α-helix nucleation time. J Phys Chem B (2011) 0.95

Using thioamides to site-specifically interrogate the dynamics of hydrogen bond formation in β-sheet folding. J Am Chem Soc (2012) 0.95

Spindle and kinetochore-associated protein 1 is overexpressed in gastric cancer and modulates cell growth. Mol Cell Biochem (2014) 0.95

Engineered single- and multi-cell chemotaxis pathways in E. coli. Mol Syst Biol (2009) 0.95

The zebrafish udu gene encodes a novel nuclear factor and is essential for primitive erythroid cell development. Blood (2007) 0.94

Understanding the folding mechanism of an alpha-helical hairpin. Biochemistry (2006) 0.94

Visible light-induced oxidative coupling reaction: easy access to Mannich-type products. Chem Commun (Camb) (2012) 0.93

Increasing phosphoproteome coverage and identification of phosphorylation motifs through combination of different HPLC fractionation methods. J Chromatogr B Analyt Technol Biomed Life Sci (2010) 0.93

Length Dependent Helix-Coil Transition Kinetics of Nine Alanine-Based Peptides. J Phys Chem B (2004) 0.93

Non-natural amino acid fluorophores for one- and two-step fluorescence resonance energy transfer applications. Anal Biochem (2009) 0.93

Influenza A virus induces p53 accumulation in a biphasic pattern. Biochem Biophys Res Commun (2009) 0.93

Light-induced helix formation. J Am Chem Soc (2002) 0.93

A one-dimensional free energy surface does not account for two-probe folding kinetics of protein alpha(3)D. J Chem Phys (2009) 0.93

Values of the Wells and revised Geneva scores combined with D-dimer in diagnosing elderly pulmonary embolism patients. Chin Med J (Engl) (2015) 0.93