Published in Chem Phys Lett on September 01, 2009
Site-Specific Spectroscopic Reporters of the Local Electric Field, Hydration, Structure, and Dynamics of Biomolecules. J Phys Chem Lett (2011) 1.36
Spectroscopic studies of protein folding: linear and nonlinear methods. Protein Sci (2011) 1.10
Measuring electrostatic fields in both hydrogen-bonding and non-hydrogen-bonding environments using carbonyl vibrational probes. J Am Chem Soc (2013) 1.10
Cyanylated Cysteine: A Covalently Attached Vibrational Probe of Protein-Lipid Contacts. J Phys Chem Lett (2010) 1.08
Photophysics of a Fluorescent Non-natural Amino Acid: p-Cyanophenylalanine. Chem Phys Lett (2010) 0.99
Site-specific infrared probes of proteins. Annu Rev Phys Chem (2015) 0.96
Selective incorporation of nitrile-based infrared probes into proteins via cysteine alkylation. Biochemistry (2010) 0.95
Non-natural amino acid fluorophores for one- and two-step fluorescence resonance energy transfer applications. Anal Biochem (2009) 0.93
C[triple bond, length as m-dash]N stretching vibration of 5-cyanotryptophan as an infrared probe of protein local environment: what determines its frequency? Phys Chem Chem Phys (2016) 0.91
Computational Modeling of the Nitrile Stretching Vibration of 5-Cyanoindole in Water. J Phys Chem Lett (2010) 0.90
3-picolyl azide adenine dinucleotide as a probe of femtosecond to picosecond enzyme dynamics. J Phys Chem B (2011) 0.88
Probing structural transitions in the intrinsically disordered C-terminal domain of the measles virus nucleoprotein by vibrational spectroscopy of cyanylated cysteines. Biophys J (2010) 0.88
Solute's perspective on how trimethylamine oxide, urea, and guanidine hydrochloride affect water's hydrogen bonding ability. J Phys Chem B (2012) 0.87
The effects of alpha-helical structure and cyanylated cysteine on each other. J Phys Chem B (2010) 0.85
Two-dimensional infrared spectroscopy of azido-nicotinamide adenine dinucleotide in water. J Chem Phys (2011) 0.85
Ester carbonyl vibration as a sensitive probe of protein local electric field. Angew Chem Int Ed Engl (2014) 0.85
Site-specific measurement of water dynamics in the substrate pocket of ketosteroid isomerase using time-resolved vibrational spectroscopy. J Phys Chem B (2012) 0.85
Quenching of p-Cyanophenylalanine Fluorescence by Various Anions. Chem Phys Lett (2013) 0.81
Measurement of the membrane dipole electric field in DMPC vesicles using vibrational shifts of p-cyanophenylalanine and molecular dynamics simulations. J Phys Chem B (2015) 0.81
Utility of 5-Cyanotryptophan Fluorescence as a Sensitive Probe of Protein Hydration. J Phys Chem B (2016) 0.80
Infrared and fluorescence assessment of the hydration status of the tryptophan gate in the influenza A M2 proton channel. Phys Chem Chem Phys (2016) 0.78
Exciton circular dichroism couplet arising from nitrile-derivatized aromatic residues as a structural probe of proteins. Anal Biochem (2016) 0.78
Minimalist IR and fluorescence probes of protein function. Curr Opin Chem Biol (2016) 0.77
Probing the effectiveness of spectroscopic reporter unnatural amino acids: a structural study. Acta Crystallogr D Struct Biol (2016) 0.76
Synthesis and Evaluation of the Sensitivity and Vibrational Lifetimes of Thiocyanate and Selenocyanate Infrared Reporters. RSC Adv (2016) 0.75
Fermi resonance as a means to determine the hydrogen-bonding status of two infrared probes. Phys Chem Chem Phys (2017) 0.75
Electric fields at the active site of an enzyme: direct comparison of experiment with theory. Science (2006) 2.32
Using nitrile-derivatized amino acids as infrared probes of local environment. J Am Chem Soc (2003) 2.30
Vibrational Stark effects calibrate the sensitivity of vibrational probes for electric fields in proteins. Biochemistry (2003) 2.14
A genetically encoded infrared probe. J Am Chem Soc (2006) 1.71
Site-specific conversion of cysteine thiols into thiocyanate creates an IR probe for electric fields in proteins. J Am Chem Soc (2006) 1.68
Bilayer interactions of indolicidin, a small antimicrobial peptide rich in tryptophan, proline, and basic amino acids. Biophys J (1997) 1.68
Mapping hydration dynamics around a protein surface. Proc Natl Acad Sci U S A (2007) 1.61
Two-dimensional infrared spectra reveal relaxation of the nonnucleoside inhibitor TMC278 complexed with HIV-1 reverse transcriptase. Proc Natl Acad Sci U S A (2007) 1.61
Structure of the bovine antimicrobial peptide indolicidin bound to dodecylphosphocholine and sodium dodecyl sulfate micelles. Biochemistry (2000) 1.57
A new method for determining the local environment and orientation of individual side chains of membrane-binding peptides. J Am Chem Soc (2004) 1.51
Nitrile and thiocyanate IR probes: quantum chemistry calculation studies and multivariate least-square fitting analysis. J Chem Phys (2008) 1.41
Conformational distribution of a 14-residue peptide in solution: a fluorescence resonance energy transfer study. J Phys Chem B (2005) 1.35
A novel fluorescent probe for protein binding and folding studies: p-cyano-phenylalanine. Biopolymers (2006) 1.27
Site-specific hydration status of an amphipathic peptide in AOT reverse micelles. Langmuir (2007) 1.21
Nitrile groups as vibrational probes: calculations of the CN infrared absorption line shape of acetonitrile in water and tetrahydrofuran. J Phys Chem B (2008) 1.21
The CN stretching band of aliphatic thiocyanate is sensitive to solvent dynamics and specific solvation. J Phys Chem A (2007) 1.20
Nitrile and thiocyanate IR probes: molecular dynamics simulation studies. J Chem Phys (2008) 1.19
Hydration dynamics and time scales of coupled water-protein fluctuations. J Am Chem Soc (2007) 1.19
Using an amino acid fluorescence resonance energy transfer pair to probe protein unfolding: application to the villin headpiece subdomain and the LysM domain. Biochemistry (2008) 1.18
Mechanism of interaction between the general anesthetic halothane and a model ion channel protein, II: Fluorescence and vibrational spectroscopy using a cyanophenylalanine probe. Biophys J (2009) 1.16
Electrostatic fields near the active site of human aldose reductase: 1. New inhibitors and vibrational stark effect measurements. Biochemistry (2008) 1.16
Vibrational Stark Effects on Carbonyl, Nitrile, and Nitrosyl Compounds Including Heme Ligands, CO, CN, and NO, Studied with Density Functional Theory. J Phys Chem B (2004) 1.13
Using two fluorescent probes to dissect the binding, insertion, and dimerization kinetics of a model membrane peptide. J Am Chem Soc (2009) 1.09
Cation-pi interactions stabilize the structure of the antimicrobial peptide indolicidin near membranes: molecular dynamics simulations. J Phys Chem B (2007) 1.06
2D IR photon echo spectroscopy reveals hydrogen bond dynamics of aromatic nitriles. Chem Phys Lett (2009) 1.03
Dual-frequency 2D IR on interaction of weak and strong IR modes. J Phys Chem A (2005) 1.01
Vibrational stark effect probes for nucleic acids. J Phys Chem B (2007) 0.98
Evidence for coupling between nitrile groups using DNA templates: a promising new method for monitoring structures with infrared spectroscopy. J Phys Chem B (2008) 0.98
Molecular dynamics simulations of indolicidin association with model lipid bilayers. Biophys J (2007) 0.94
Fluorescent amino acid analogs. Methods Enzymol (2003) 0.94
Mechanism of interaction between the general anesthetic halothane and a model ion channel protein, III: Molecular dynamics simulation incorporating a cyanophenylalanine spectroscopic probe. Biophys J (2009) 0.92
Optimized quantum mechanics/molecular mechanics strategies for nitrile vibrational probes: acetonitrile and para-tolunitrile in water and tetrahydrofuran. J Phys Chem B (2008) 0.92
A vibrational probe for local nucleic acid environments: 5-cyano-2'-deoxyuridine. J Phys Chem B (2008) 0.90
Investigation of an unnatural amino acid for use as a resonance Raman probe: Detection limits, solvent and temperature dependence of the νC≡N band of 4-cyanophenylalanine. J Raman Spectrosc (2008) 0.89
Vibrational solvatochromism and electrochromism: coarse-grained models and their relationships. J Chem Phys (2009) 0.86
Integrated and dispersed photon echo studies of nitrile stretching vibration of 4-cyanophenol in methanol. J Chem Phys (2009) 0.86
Helix formation via conformation diffusion search. Proc Natl Acad Sci U S A (2002) 2.34
Using nitrile-derivatized amino acids as infrared probes of local environment. J Am Chem Soc (2003) 2.30
Ultrafast folding of alpha3D: a de novo designed three-helix bundle protein. Proc Natl Acad Sci U S A (2003) 1.57
A new method for determining the local environment and orientation of individual side chains of membrane-binding peptides. J Am Chem Soc (2004) 1.51
Cholesterol-dependent phase separation in cell-derived giant plasma-membrane vesicles. Biochem J (2009) 1.40
Understanding the key factors that control the rate of beta-hairpin folding. Proc Natl Acad Sci U S A (2004) 1.40
Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy. Proc Natl Acad Sci U S A (2004) 1.39
Site-Specific Spectroscopic Reporters of the Local Electric Field, Hydration, Structure, and Dynamics of Biomolecules. J Phys Chem Lett (2011) 1.36
Conformational distribution of a 14-residue peptide in solution: a fluorescence resonance energy transfer study. J Phys Chem B (2005) 1.35
A novel fluorescent probe for protein binding and folding studies: p-cyano-phenylalanine. Biopolymers (2006) 1.27
Ultrafast folding of a computationally designed Trp-cage mutant: Trp2-cage. J Phys Chem B (2006) 1.26
Probing the folding transition state structure of the villin headpiece subdomain via side chain and backbone mutagenesis. J Am Chem Soc (2009) 1.23
Infrared study of the effect of hydration on the amide I band and aggregation properties of helical peptides. J Phys Chem B (2007) 1.21
Site-specific hydration status of an amphipathic peptide in AOT reverse micelles. Langmuir (2007) 1.21
Using an amino acid fluorescence resonance energy transfer pair to probe protein unfolding: application to the villin headpiece subdomain and the LysM domain. Biochemistry (2008) 1.18
The Two Dimensional Vibrational Echo of a Nitrile Probe of the Villin HP35 Protein. J Phys Chem Lett (2010) 1.15
Divalent cation-induced cluster formation by polyphosphoinositides in model membranes. J Am Chem Soc (2012) 1.14
Effect of dehydration on the aggregation kinetics of two amyloid peptides. J Phys Chem B (2009) 1.14
Transmembrane orientation and possible role of the fusogenic peptide from parainfluenza virus 5 (PIV5) in promoting fusion. Proc Natl Acad Sci U S A (2011) 1.14
Infrared study of the stability and folding kinetics of a 15-residue beta-hairpin. J Am Chem Soc (2003) 1.12
Spectroscopic studies of protein folding: linear and nonlinear methods. Protein Sci (2011) 1.10
Using two fluorescent probes to dissect the binding, insertion, and dimerization kinetics of a model membrane peptide. J Am Chem Soc (2009) 1.09
Nanosecond folding dynamics of a three-stranded beta-sheet. J Am Chem Soc (2006) 1.09
Role of helix nucleation in the kinetics of binding of mastoparan X to phospholipid bilayers. Biochemistry (2007) 1.08
Probing the kinetics of membrane-mediated helix folding. J Phys Chem B (2006) 1.08
Folding kinetics of a naturally occurring helical peptide: implication of the folding speed limit of helical proteins. J Phys Chem B (2008) 1.08
Effect of macromolecular crowding on protein folding dynamics at the secondary structure level. J Mol Biol (2009) 1.07
Understanding the mechanism of beta-hairpin folding via phi-value analysis. Biochemistry (2006) 1.06
Limitations of yeast surface display in engineering proteins of high thermostability. Protein Eng Des Sel (2006) 1.06
Achieving secondary structural resolution in kinetic measurements of protein folding: a case study of the folding mechanism of Trp-cage. Angew Chem Int Ed Engl (2011) 1.05
2D IR photon echo spectroscopy reveals hydrogen bond dynamics of aromatic nitriles. Chem Phys Lett (2009) 1.03
Tuning the cooperativity of the helix-coil transition by aqueous reverse micelles. J Phys Chem B (2006) 1.01
Identification of arginine residues in peptides by 2D-IR echo spectroscopy. J Phys Chem A (2011) 0.99
Photophysics of a Fluorescent Non-natural Amino Acid: p-Cyanophenylalanine. Chem Phys Lett (2010) 0.99
Dissecting the membrane binding and insertion kinetics of a pHLIP peptide. Biochemistry (2008) 0.97
Alpha 1-antitrypsin polymerization: a fluorescence correlation spectroscopic study. Biochemistry (2005) 0.97
Site-specific infrared probes of proteins. Annu Rev Phys Chem (2015) 0.96
Selective incorporation of nitrile-based infrared probes into proteins via cysteine alkylation. Biochemistry (2010) 0.95
Direct assessment of the α-helix nucleation time. J Phys Chem B (2011) 0.95
Using thioamides to site-specifically interrogate the dynamics of hydrogen bond formation in β-sheet folding. J Am Chem Soc (2012) 0.95
Understanding the folding mechanism of an alpha-helical hairpin. Biochemistry (2006) 0.94
Length Dependent Helix-Coil Transition Kinetics of Nine Alanine-Based Peptides. J Phys Chem B (2004) 0.93
A one-dimensional free energy surface does not account for two-probe folding kinetics of protein alpha(3)D. J Chem Phys (2009) 0.93
Non-natural amino acid fluorophores for one- and two-step fluorescence resonance energy transfer applications. Anal Biochem (2009) 0.93
Light-induced helix formation. J Am Chem Soc (2002) 0.93
Computational Modeling of the Nitrile Stretching Vibration of 5-Cyanoindole in Water. J Phys Chem Lett (2010) 0.90
Determining beta-sheet stability by Fourier transform infrared difference spectra. Biopolymers (2004) 0.90
T-jump infrared study of the folding mechanism of coiled-coil GCN4-p1. Biophys J (2005) 0.90
Computational design of a β-peptide that targets transmembrane helices. J Am Chem Soc (2011) 0.89
Denaturant-induced expansion and compaction of a multi-domain protein: IgG. J Mol Biol (2008) 0.89
Infrared signature and folding dynamics of a helical beta-peptide. J Am Chem Soc (2010) 0.88
Native state conformational heterogeneity of HP35 revealed by time-resolved FRET. J Phys Chem B (2012) 0.88
Solute's perspective on how trimethylamine oxide, urea, and guanidine hydrochloride affect water's hydrogen bonding ability. J Phys Chem B (2012) 0.87
Ester carbonyl vibration as a sensitive probe of protein local electric field. Angew Chem Int Ed Engl (2014) 0.85
Fluorescence correlation spectroscopic study of serpin depolymerization by computationally designed peptides. J Mol Biol (2007) 0.85
Characterization of the cofactor-induced folding mechanism of a zinc-binding peptide using computationally designed mutants. J Mol Biol (2009) 0.85
p-Cyanophenylalanine and selenomethionine constitute a useful fluorophore-quencher pair for short distance measurements: application to polyproline peptides. Phys Chem Chem Phys (2015) 0.84
Heterogeneous and anomalous diffusion inside lipid tubules. J Phys Chem B (2007) 0.84
Design, synthesis, and photochemical validation of peptide linchpins containing the S,S-tetrazine phototrigger. Org Lett (2012) 0.83
Heterogeneous diffusion of a membrane-bound pHLIP peptide. Biophys J (2010) 0.83
Fluorescence correlation spectroscopy measurements of the membrane protein TetA in Escherichia coli suggest rapid diffusion at short length scales. PLoS One (2012) 0.82
Truncation of a cross-linked GCN4-p1 coiled coil leads to ultrafast folding. Biochemistry (2006) 0.82
Light-triggered disassembly of amyloid fibrils. Langmuir (2012) 0.82
Using D-Amino Acids to Delineate the Mechanism of Protein Folding: Application to Trp-cage. Chem Phys (2013) 0.82
Photoinduced electron transfer and fluorophore motion as a probe of the conformational dynamics of membrane proteins: application to the influenza a M2 proton channel. Langmuir (2011) 0.81
Using VIPT-jump to distinguish between different folding mechanisms: application to BBL and a Trpzip. J Am Chem Soc (2013) 0.81
The effect of charge-charge interactions on the kinetics of alpha-helix formation. Biophys J (2007) 0.81
Quenching of p-Cyanophenylalanine Fluorescence by Various Anions. Chem Phys Lett (2013) 0.81
Probing the folding intermediate of Rd-apocyt b562 by protein engineering and infrared T-jump. Protein Sci (2007) 0.81
Assessment of local friction in protein folding dynamics using a helix cross-linker. J Phys Chem B (2013) 0.81
Probing the kinetic cooperativity of beta-sheet folding perpendicular to the strand direction. Biochemistry (2008) 0.80
Diffusion as a probe of the heterogeneity of antimicrobial peptide-membrane interactions. Biochemistry (2010) 0.80
Slow and bimolecular folding of a de novo designed monomeric protein DS119. Biophys J (2013) 0.79
Tuning the Attempt Frequency of Protein Folding Dynamics via Transition-State Rigidification: Application to Trp-Cage. J Phys Chem Lett (2015) 0.79
Experimental validation of the role of trifluoroethanol as a nanocrowder. J Phys Chem B (2014) 0.78
Power-law dependence of the melting temperature of ubiquitin on the volume fraction of macromolecular crowders. J Chem Phys (2011) 0.78
How quickly can a β-hairpin fold from its transition state? J Phys Chem B (2014) 0.78
2D IR spectroscopy of histidine: probing side-chain structure and dynamics via backbone amide vibrations. J Phys Chem B (2014) 0.78
Infrared study of the folding mechanism of a helical hairpin: porcine PYY. Biochemistry (2010) 0.78
Amide I Band and Photoinduced Disassembly of a Peptide Hydrogel. Chem Phys Lett (2013) 0.76
The design and synthesis of alanine-rich α-helical peptides constrained by an S,S-tetrazine photochemical trigger: a fragment union approach. J Org Chem (2013) 0.76
Direct measurement of the tryptophan-mediated photocleavage kinetics of a protein disulfide bond. Phys Chem Chem Phys (2016) 0.75
Aggregation gatekeeper and controlled assembly of Trpzip β-hairpins. Biochemistry (2014) 0.75
Probing the role of hydration in the unfolding transitions of carbonmonoxy myoglobin and apomyoglobin. J Phys Chem B (2009) 0.75
Diffusion as a probe of peptide-induced membrane domain formation. Biochemistry (2011) 0.75
Slow folding-unfolding kinetics of an octameric β-peptide bundle. ACS Chem Biol (2013) 0.75
Simple method to enhance the photostability of the fluorescence reporter R6G for prolonged single-molecule studies. J Phys Chem A (2013) 0.75
Kinetic Isotope Effect Provides Insight into the Vibrational Relaxation Mechanism of Aromatic Molecules: Application to Cyano-phenylalanine. J Phys Chem Lett (2016) 0.75
A millisecond infrared stopped-flow apparatus. Appl Spectrosc (2006) 0.75
Tyrosine as a Non-Perturbing Site-Specific Vibrational Reporter for Protein Dynamics. J Phys Chem B (2017) 0.75
Fermi resonance as a means to determine the hydrogen-bonding status of two infrared probes. Phys Chem Chem Phys (2017) 0.75
Enhanced light-harvesting capability for silicon single-nanowire solar cells coupled with metallic cavity. Opt Express (2016) 0.75