Published in Database (Oxford) on November 17, 2012
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database (Oxford) (2013) 1.82
COMPARTMENTS: unification and visualization of protein subcellular localization evidence. Database (Oxford) (2014) 1.16
Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases. Database (Oxford) (2013) 1.06
Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts. Database (Oxford) (2013) 0.99
Scaling drug indication curation through crowdsourcing. Database (Oxford) (2015) 0.97
The potential of text mining in data integration and network biology for plant research: a case study on Arabidopsis. Plant Cell (2013) 0.94
Comprehensive comparison of large-scale tissue expression datasets. PeerJ (2015) 0.90
The BioGRID interaction database: 2017 update. Nucleic Acids Res (2016) 0.86
Manually curated database of rice proteins. Nucleic Acids Res (2013) 0.82
Closing the loop: from paper to protein annotation using supervised Gene Ontology classification. Database (Oxford) (2014) 0.81
Can we replace curation with information extraction software? Database (Oxford) (2016) 0.81
Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL). Database (Oxford) (2016) 0.80
Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals. PLoS One (2016) 0.78
MetaRNA-Seq: An Interactive Tool to Browse and Annotate Metadata from RNA-Seq Studies. Biomed Res Int (2015) 0.75
Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges. Database (Oxford) (2016) 0.75
SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data. Wellcome Open Res (2017) 0.75
The Sequence Ontology: a tool for the unification of genome annotations. Genome Biol (2005) 18.20
Textpresso: an ontology-based information retrieval and extraction system for biological literature. PLoS Biol (2004) 15.72
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Res (2011) 8.18
Disease Ontology: a backbone for disease semantic integration. Nucleic Acids Res (2011) 6.03
The Gene Ontology: enhancements for 2011. Nucleic Acids Res (2011) 5.82
Manual curation is not sufficient for annotation of genomic databases. Bioinformatics (2007) 4.16
WormBase 2012: more genomes, more data, new website. Nucleic Acids Res (2011) 3.87
Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation. BMC Bioinformatics (2009) 2.74
Text mining for the biocuration workflow. Database (Oxford) (2012) 2.37
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Res (2008) 2.28
The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. Nucleic Acids Res (2011) 2.16
Directly e-mailing authors of newly published papers encourages community curation. Database (Oxford) (2012) 1.73
WormBook: the online review of Caenorhabditis elegans biology. Nucleic Acids Res (2006) 1.71
Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community. BMC Bioinformatics (2011) 1.69
Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach. Front Genet (2012) 1.56
dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa. Nucleic Acids Res (2010) 1.54
Toward an interactive article: integrating journals and biological databases. BMC Bioinformatics (2011) 1.37
Automatic categorization of diverse experimental information in the bioscience literature. BMC Bioinformatics (2012) 1.27
A database for chemical proteomics: ChEBI. Methods Mol Biol (2012) 1.19
Building a cell and anatomy ontology of Caenorhabditis elegans. Comp Funct Genomics (2003) 0.97
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res (2003) 18.69
Textpresso: an ontology-based information retrieval and extraction system for biological literature. PLoS Biol (2004) 15.72
The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res (2007) 14.24
Big data: The future of biocuration. Nature (2008) 10.81
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Res (2011) 8.18
WormBase: better software, richer content. Nucleic Acids Res (2006) 6.78
Dissecting virulence: systematic and functional analyses of a pathogenicity island. Proc Natl Acad Sci U S A (2004) 5.34
WormBase: a cross-species database for comparative genomics. Nucleic Acids Res (2003) 5.28
WormBase: a comprehensive resource for nematode research. Nucleic Acids Res (2009) 5.20
Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol (2004) 5.17
Genome-wide association study identifies variants in the ABO locus associated with susceptibility to pancreatic cancer. Nat Genet (2009) 5.14
A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33. Nat Genet (2010) 4.89
The neuroscience information framework: a data and knowledge environment for neuroscience. Neuroinformatics (2008) 4.60
Genome-wide prediction of C. elegans genetic interactions. Science (2006) 4.15
WormBase: a multi-species resource for nematode biology and genomics. Nucleic Acids Res (2004) 4.14
WormBase: new content and better access. Nucleic Acids Res (2006) 4.01
Cross-product extensions of the Gene Ontology. J Biomed Inform (2010) 4.00
Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF). Neuroinformatics (2008) 3.94
WormBase 2012: more genomes, more data, new website. Nucleic Acids Res (2011) 3.87
WormBase: a comprehensive data resource for Caenorhabditis biology and genomics. Nucleic Acids Res (2005) 3.82
TAIR: a resource for integrated Arabidopsis data. Funct Integr Genomics (2002) 3.74
WormBase 2007. Nucleic Acids Res (2007) 3.69
Detectable clonal mosaicism and its relationship to aging and cancer. Nat Genet (2012) 3.69
Antibiotic-induced perturbations of the intestinal microbiota alter host susceptibility to enteric infection. Infect Immun (2008) 3.68
Risk factors for hepatocellular carcinoma: synergism of alcohol with viral hepatitis and diabetes mellitus. Hepatology (2002) 3.59
MicroRNAs in plasma of pancreatic ductal adenocarcinoma patients as novel blood-based biomarkers of disease. Cancer Prev Res (Phila) (2009) 3.55
A blend of small molecules regulates both mating and development in Caenorhabditis elegans. Nature (2008) 3.45
Automatic document classification of biological literature. BMC Bioinformatics (2006) 3.27
A C. elegans stretch receptor neuron revealed by a mechanosensitive TRP channel homologue. Nature (2006) 3.20
Lensless high-resolution on-chip optofluidic microscopes for Caenorhabditis elegans and cell imaging. Proc Natl Acad Sci U S A (2008) 2.88
HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis. Development (2003) 2.82
Optofluidic microscopy--a method for implementing a high resolution optical microscope on a chip. Lab Chip (2006) 2.80
FOS-1 promotes basement-membrane removal during anchor-cell invasion in C. elegans. Cell (2005) 2.77
Plasma protein profiling for diagnosis of pancreatic cancer reveals the presence of host response proteins. Clin Cancer Res (2005) 2.76
dictyBase--a Dictyostelium bioinformatics resource update. Nucleic Acids Res (2008) 2.75
Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation. BMC Bioinformatics (2009) 2.74
A C. elegans model of nicotine-dependent behavior: regulation by TRP-family channels. Cell (2006) 2.68
A shortcut to identifying small molecule signals that regulate behavior and development in Caenorhabditis elegans. Proc Natl Acad Sci U S A (2009) 2.64
RNA Pol II accumulates at promoters of growth genes during developmental arrest. Science (2009) 2.63
An automated system for measuring parameters of nematode sinusoidal movement. BMC Genet (2005) 2.57
Identification and characterization of NleA, a non-LEE-encoded type III translocated virulence factor of enterohaemorrhagic Escherichia coli O157:H7. Mol Microbiol (2004) 2.51
dictyBase, the model organism database for Dictyostelium discoideum. Nucleic Acids Res (2006) 2.45
Risk factors for pancreatic cancer: case-control study. Am J Gastroenterol (2007) 2.40
Textpresso for neuroscience: searching the full text of thousands of neuroscience research papers. Neuroinformatics (2008) 2.39
WormBase 2014: new views of curated biology. Nucleic Acids Res (2013) 2.39
A modular library of small molecule signals regulates social behaviors in Caenorhabditis elegans. PLoS Biol (2012) 2.38
Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. J Bacteriol (2005) 2.38
Text mining for the biocuration workflow. Database (Oxford) (2012) 2.37
C. elegans LIN-18 is a Ryk ortholog and functions in parallel to LIN-17/Frizzled in Wnt signaling. Cell (2004) 2.35
The PI 3-kinase/Akt signaling pathway is activated due to aberrant Pten expression and targets transcription factors NF-kappaB and c-Myc in pancreatic cancer cells. Oncogene (2004) 2.35
DAF-16/FOXO regulates transcription of cki-1/Cip/Kip and repression of lin-4 during C. elegans L1 arrest. Curr Biol (2006) 2.33
Salmonella enterica serovar Typhimurium pathogenicity island 2 is necessary for complete virulence in a mouse model of infectious enterocolitis. Infect Immun (2005) 2.32
ATM regulates Mre11-dependent DNA end-degradation and microhomology-mediated end joining. Cell Cycle (2010) 2.32
A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II. Mol Cell (2004) 2.27
Anchor cell invasion into the vulval epithelium in C. elegans. Dev Cell (2003) 2.23
Citrobacter rodentium translocated intimin receptor (Tir) is an essential virulence factor needed for actin condensation, intestinal colonization and colonic hyperplasia in mice. Mol Microbiol (2003) 2.21
Metformin use is associated with better survival of diabetic patients with pancreatic cancer. Clin Cancer Res (2012) 2.17
Ascaris suum draft genome. Nature (2011) 2.16
BioCreative III interactive task: an overview. BMC Bioinformatics (2011) 2.16
Ascaroside signaling is widely conserved among nematodes. Curr Biol (2012) 2.15
Overview of the Alliance for Cellular Signaling. Nature (2002) 2.15
Readily available tissue-engineered vascular grafts. Sci Transl Med (2011) 2.13
Association of diabetes duration and diabetes treatment with the risk of hepatocellular carcinoma. Cancer (2010) 2.04
Complete genome sequence of the multiresistant taxonomic outlier Pseudomonas aeruginosa PA7. PLoS One (2010) 2.03
The association of family history of liver cancer with hepatocellular carcinoma: a case-control study in the United States. J Hepatol (2008) 2.02
Cytokines in pancreatic carcinoma: correlation with phenotypic characteristics and prognosis. Cancer (2004) 2.02
Acute carbon dioxide avoidance in Caenorhabditis elegans. Proc Natl Acad Sci U S A (2008) 1.97
Transgene-free genome editing in Caenorhabditis elegans using CRISPR-Cas. Genetics (2013) 1.95
Association between hepatitis B virus and pancreatic cancer. J Clin Oncol (2008) 1.93
Discovery of an ectopic activation site on the M(1) muscarinic receptor. Mol Pharmacol (2002) 1.90
Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts. Database (Oxford) (2012) 1.89
Analysis of the contribution of Salmonella pathogenicity islands 1 and 2 to enteric disease progression using a novel bovine ileal loop model and a murine model of infectious enterocolitis. Infect Immun (2005) 1.88
Protein expression profiles in pancreatic adenocarcinoma compared with normal pancreatic tissue and tissue affected by pancreatitis as detected by two-dimensional gel electrophoresis and mass spectrometry. Cancer Res (2004) 1.84
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database (Oxford) (2013) 1.82