Published in Nucleic Acids Res on November 04, 2013
The BioGRID interaction database: 2015 update. Nucleic Acids Res (2014) 4.06
The BioMart community portal: an innovative alternative to large, centralized data repositories. Nucleic Acids Res (2015) 2.60
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software. Nucleic Acids Res (2014) 1.73
The GOA database: gene Ontology annotation updates for 2015. Nucleic Acids Res (2014) 1.73
FlyBase: establishing a Gene Group resource for Drosophila melanogaster. Nucleic Acids Res (2015) 1.72
Ensembl Genomes 2016: more genomes, more complexity. Nucleic Acids Res (2015) 1.66
WormBase 2016: expanding to enable helminth genomic research. Nucleic Acids Res (2015) 1.42
WikiPathways: capturing the full diversity of pathway knowledge. Nucleic Acids Res (2015) 1.35
Data publication consensus and controversies. F1000Res (2014) 1.32
Regulation of RNA granule dynamics by phosphorylation of serine-rich, intrinsically disordered proteins in C. elegans. Elife (2014) 1.31
BioCreative-IV virtual issue. Database (Oxford) (2014) 1.23
JBrowse: a dynamic web platform for genome visualization and analysis. Genome Biol (2016) 1.09
The gene expression database for mouse development (GXD): putting developmental expression information at your fingertips. Dev Dyn (2014) 0.99
The Disease Ontology: fostering interoperability between biological and clinical human disease-related data. Mamm Genome (2015) 0.99
The European Bioinformatics Institute in 2016: Data growth and integration. Nucleic Acids Res (2015) 0.98
D-Glucosamine supplementation extends life span of nematodes and of ageing mice. Nat Commun (2014) 0.96
Genome and transcriptome of the porcine whipworm Trichuris suis. Nat Genet (2014) 0.96
Biological databases for human research. Genomics Proteomics Bioinformatics (2015) 0.96
Conserved mRNA-binding proteomes in eukaryotic organisms. Nat Struct Mol Biol (2015) 0.93
Helminth.net: expansions to Nematode.net and an introduction to Trematode.net. Nucleic Acids Res (2014) 0.91
deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data. Nucleic Acids Res (2015) 0.91
Palaeosymbiosis revealed by genomic fossils of Wolbachia in a strongyloidean nematode. PLoS Genet (2014) 0.90
Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment. BMC Bioinformatics (2015) 0.90
Functional and phylogenetic characterization of proteins detected in various nematode intestinal compartments. Mol Cell Proteomics (2015) 0.88
Application of comparative biology in GO functional annotation: the mouse model. Mamm Genome (2015) 0.88
WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration. BMC Bioinformatics (2015) 0.86
The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion. Genome Biol (2014) 0.86
Beyond protein expression, MOPED goes multi-omics. Nucleic Acids Res (2014) 0.85
Analysis of the Na+/Ca2+ exchanger gene family within the phylum Nematoda. PLoS One (2014) 0.83
The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo. Dev Cell (2015) 0.83
Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine. Nucleic Acids Res (2015) 0.82
The specification and global reprogramming of histone epigenetic marks during gamete formation and early embryo development in C. elegans. PLoS Genet (2014) 0.82
Web resources for model organism studies. Genomics Proteomics Bioinformatics (2015) 0.81
RNA helicase HEL-1 promotes longevity by specifically activating DAF-16/FOXO transcription factor signaling in Caenorhabditis elegans. Proc Natl Acad Sci U S A (2015) 0.81
Co-Inheritance Analysis within the Domains of Life Substantially Improves Network Inference by Phylogenetic Profiling. PLoS One (2015) 0.79
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. BMC Dev Biol (2016) 0.78
Mason: a JavaScript web site widget for visualizing and comparing annotated features in nucleotide or protein sequences. BMC Res Notes (2015) 0.78
The KLP-7 Residue S546 Is a Putative Aurora Kinase Site Required for Microtubule Regulation at the Centrosome in C. elegans. PLoS One (2015) 0.78
Defining the Schistosoma haematobium kinome enables the prediction of essential kinases as anti-schistosome drug targets. Sci Rep (2015) 0.78
Branched-chain amino acid catabolism is a conserved regulator of physiological ageing. Nat Commun (2015) 0.78
Targeting Lysine Deacetylases (KDACs) in Parasites. PLoS Negl Trop Dis (2015) 0.78
Cracking the nodule worm code advances knowledge of parasite biology and biotechnology to tackle major diseases of livestock. Biotechnol Adv (2015) 0.78
Nematophagous fungus Arthrobotrys oligospora mimics olfactory cues of sex and food to lure its nematode prey. Elife (2017) 0.77
An evidence-based approach to identify aging-related genes in Caenorhabditis elegans. BMC Bioinformatics (2015) 0.77
Abnormal Osmotic Avoidance Behavior in C. elegans Is Associated with Increased Hypertonic Stress Resistance and Improved Proteostasis. PLoS One (2016) 0.77
Specific down-regulation of spermatogenesis genes targeted by 22G RNAs in hybrid sterile males associated with an X-Chromosome introgression. Genome Res (2016) 0.77
A Caenorhabditis elegans Genome-Scale Metabolic Network Model. Cell Syst (2016) 0.76
Algorithms for modeling global and context-specific functional relationship networks. Brief Bioinform (2015) 0.76
hecd-1 modulates notch activity in Caenorhabditis elegans. G3 (Bethesda) (2014) 0.76
The tubulin repertoire of C. elegans sensory neurons and its context-dependent role in process outgrowth. Mol Biol Cell (2016) 0.76
The Haemonchus contortus kinome - a resource for fundamental molecular investigations and drug discovery. Parasit Vectors (2015) 0.76
SurvCurv database and online survival analysis platform update. Bioinformatics (2015) 0.76
Drug repurposing for aging research using model organisms. Aging Cell (2017) 0.75
Direct experimental manipulation of intestinal cells in Ascaris suum, with minor influences on the global transcriptome. Int J Parasitol (2017) 0.75
GeneWeaver: data driven alignment of cross-species genomics in biology and disease. Nucleic Acids Res (2015) 0.75
GExplore 1.4: An expanded web interface for queries on Caenorhabditis elegans protein and gene function. Worm (2016) 0.75
The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud. Database (Oxford) (2014) 0.75
Digital development: a database of cell lineage differentiation in C. elegans with lineage phenotypes, cell-specific gene functions and a multiscale model. Nucleic Acids Res (2015) 0.75
Characterization of parasite-specific indels and their proposed relevance for selective anthelminthic drug targeting. Infect Genet Evol (2016) 0.75
Biocuration with insufficient resources and fixed timelines. Database (Oxford) (2015) 0.75
GEneSTATION 1.0: a synthetic resource of diverse evolutionary and functional genomic data for studying the evolution of pregnancy-associated tissues and phenotypes. Nucleic Acids Res (2015) 0.75
Proteomic identification of germline proteins in Caenorhabditis elegans. Worm (2015) 0.75
Inactivity periods and postural change speed can explain atypical postural change patterns of Caenorhabditis elegans mutants. BMC Bioinformatics (2017) 0.75
An Asymmetrically Balanced Organization of Kinases versus Phosphatases across Eukaryotes Determines Their Distinct Impacts. PLoS Comput Biol (2017) 0.75
Using FlyBase, a Database of Drosophila Genes and Genomes. Methods Mol Biol (2016) 0.75
Exo-miRExplorer: A Comprehensive Resource for Exploring and Comparatively Analyzing Exogenous MicroRNAs. Front Microbiol (2017) 0.75
Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction. BMC Genomics (2017) 0.75
Anti-amyloid compounds protect from silica nanoparticle-induced neurotoxicity in the nematode C. elegans. Nanotoxicology (2015) 0.75
Large-scale analysis of the evolutionary histories of phosphorylation motifs in the human genome. Gigascience (2015) 0.75
Effect of mutation mechanisms on variant composition and distribution in Caenorhabditis elegans. PLoS Comput Biol (2017) 0.75
Tiling Assembly: a new tool for reference annotation-independent transcript assembly and novel gene identification by RNA-sequencing. DNA Res (2015) 0.75
Natural Marine and Synthetic Xenobiotics Get on Nematode's Nerves: Neuro-Stimulating and Neurotoxic Findings in Caenorhabditis elegans. Mar Drugs (2015) 0.75
Big Data in Caenorhabditis elegans: quo vadis? Mol Biol Cell (2015) 0.75
Towards a compendium of essential genes - From model organisms to synthetic lethality in cancer cells. Crit Rev Biochem Mol Biol (2015) 0.75
Establishing a reference array for the CS-αβ superfamily of defensive peptides. BMC Res Notes (2016) 0.75
Contribution of trans regulatory eQTL to cryptic genetic variation in C. elegans. BMC Genomics (2017) 0.75
The omic approach to parasitic trematode research-a review of techniques and developments within the past 5 years. Parasitol Res (2016) 0.75
The genetics of Caenorhabditis elegans. Genetics (1974) 102.14
Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity. Nat Genet (2012) 2.85
InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. Bioinformatics (2012) 2.44
The million mutation project: a new approach to genetics in Caenorhabditis elegans. Genome Res (2013) 2.20
Parallel evolution of domesticated Caenorhabditis species targets pheromone receptor genes. Nature (2011) 2.18
Ascaris suum draft genome. Nature (2011) 2.16
Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. PLoS Pathog (2011) 2.09
C. elegans mutant identification with a one-step whole-genome-sequencing and SNP mapping strategy. PLoS One (2010) 2.02
Silencing of germline-expressed genes by DNA elimination in somatic cells. Dev Cell (2012) 1.54
Genomics of Loa loa, a Wolbachia-free filarial parasite of humans. Nat Genet (2013) 1.52
Whole genome sequencing highlights genetic changes associated with laboratory domestication of C. elegans. PLoS One (2010) 1.44
The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery. Genome Biol (2013) 1.44
The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets. FASEB J (2012) 1.40
The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus. Genome Biol (2013) 1.37
A lover and a fighter: the genome sequence of an entomopathogenic nematode Heterorhabditis bacteriophora. PLoS One (2013) 1.11
Methods and strategies for gene structure curation in WormBase. Database (Oxford) (2011) 1.06
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle. Genetics (2013) 1.04
WormBase: Annotating many nematode genomes. Worm (2012) 0.91
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res (2005) 44.08
Genome sequence of the human malaria parasite Plasmodium falciparum. Nature (2002) 37.89
Whole-genome sequencing and variant discovery in C. elegans. Nat Methods (2008) 31.92
The Sequence Ontology: a tool for the unification of genome annotations. Genome Biol (2005) 18.20
DNA methylation profiling of human chromosomes 6, 20 and 22. Nat Genet (2006) 18.08
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
ACT: the Artemis Comparison Tool. Bioinformatics (2005) 17.91
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nat Biotechnol (2004) 16.08
Textpresso: an ontology-based information retrieval and extraction system for biological literature. PLoS Biol (2004) 15.72
Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res (2008) 15.69
Automated annotation of microbial proteomes in SWISS-PROT. Comput Biol Chem (2003) 13.44
Reactome: a knowledge base of biologic pathways and processes. Genome Biol (2007) 13.36
The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol (2003) 13.32
The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res (2003) 12.81
The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Nature (2003) 12.44
The EMBL Nucleotide Sequence Database. Nucleic Acids Res (2002) 12.05
Unlocking the secrets of the genome. Nature (2009) 11.80
Receptor interacting protein kinase-3 determines cellular necrotic response to TNF-alpha. Cell (2009) 11.36
Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res (2010) 11.23
Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes. Nat Methods (2009) 10.41
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science (2010) 9.78
R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway. Science (2003) 9.53
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics (2008) 9.17
Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Nat Genet (2003) 9.13
The genome of the kinetoplastid parasite, Leishmania major. Science (2005) 8.64
Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid. Nat Genet (2004) 8.60
The Reactome pathway knowledgebase. Nucleic Acids Res (2013) 8.56
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nature (2005) 8.55
The BioGRID Interaction Database: 2011 update. Nucleic Acids Res (2010) 8.46
The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nat Genet (2006) 8.02
A standard variation file format for human genome sequences. Genome Biol (2010) 7.83
Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. Proc Natl Acad Sci U S A (2004) 7.30
The EMBL Nucleotide Sequence Database. Nucleic Acids Res (2005) 7.18
The EMBL Nucleotide Sequence Database: major new developments. Nucleic Acids Res (2003) 7.17
Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol (2004) 7.17
Mule/ARF-BP1, a BH3-only E3 ubiquitin ligase, catalyzes the polyubiquitination of Mcl-1 and regulates apoptosis. Cell (2005) 6.86
TNF-alpha induces two distinct caspase-8 activation pathways. Cell (2008) 6.81
WormBase: better software, richer content. Nucleic Acids Res (2006) 6.78
The EMBL Nucleotide Sequence Database. Nucleic Acids Res (2004) 6.72
Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res (2002) 6.65
Mixed lineage kinase domain-like protein mediates necrosis signaling downstream of RIP3 kinase. Cell (2012) 6.56
Two phase 3 trials of bapineuzumab in mild-to-moderate Alzheimer's disease. N Engl J Med (2014) 6.50
Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation. Cell (2005) 6.47
GeneDB: a resource for prokaryotic and eukaryotic organisms. Nucleic Acids Res (2004) 6.30
Elimination of Mcl-1 is required for the initiation of apoptosis following ultraviolet irradiation. Genes Dev (2003) 6.17
Ensembl BioMarts: a hub for data retrieval across taxonomic space. Database (Oxford) (2011) 6.04
A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses. Science (2005) 5.99
Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature (2009) 5.90
Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps. Genome Biol (2010) 5.79
Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature (2012) 5.67
DNAPlotter: circular and linear interactive genome visualization. Bioinformatics (2008) 5.49
Cytochrome C-mediated apoptosis. Annu Rev Biochem (2004) 5.38
Specific ablation of the apoptotic functions of cytochrome C reveals a differential requirement for cytochrome C and Apaf-1 in apoptosis. Cell (2005) 5.37
Comparative genomics of trypanosomatid parasitic protozoa. Science (2005) 5.37
Dissecting virulence: systematic and functional analyses of a pathogenicity island. Proc Natl Acad Sci U S A (2004) 5.34
A 3.9-centimorgan-resolution human single-nucleotide polymorphism linkage map and screening set. Am J Hum Genet (2003) 5.34
WormBase: a cross-species database for comparative genomics. Nucleic Acids Res (2003) 5.28
Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia. Nat Genet (2013) 5.22
WormBase: a comprehensive resource for nematode research. Nucleic Acids Res (2009) 5.20
Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc Natl Acad Sci U S A (2006) 5.13
Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature (2011) 5.13
Autocrine TNFalpha signaling renders human cancer cells susceptible to Smac-mimetic-induced apoptosis. Cancer Cell (2007) 5.09
Jaundice Constrain or Indication? Response. Radiology (2017) 5.07