Published in G3 (Bethesda) on November 01, 2012
Genomic prediction in maize breeding populations with genotyping-by-sequencing. G3 (Bethesda) (2013) 1.75
Genomic prediction in CIMMYT maize and wheat breeding programs. Heredity (Edinb) (2013) 1.59
Interacted QTL mapping in partial NCII design provides evidences for breeding by design. PLoS One (2015) 1.45
Imputation of unordered markers and the impact on genomic selection accuracy. G3 (Bethesda) (2013) 1.39
Genomic predictability of interconnected biparental maize populations. Genetics (2013) 1.27
Genomic prediction in biparental tropical maize populations in water-stressed and well-watered environments using low-density and GBS SNPs. Heredity (Edinb) (2014) 1.10
Training set optimization under population structure in genomic selection. Theor Appl Genet (2014) 1.09
Genome properties and prospects of genomic prediction of hybrid performance in a breeding program of maize. Genetics (2014) 1.02
Genomic selection accuracies within and between environments and small breeding groups in white spruce. BMC Genomics (2014) 0.99
Applications of population genetics to animal breeding, from wright, fisher and lush to genomic prediction. Genetics (2014) 0.98
The accuracy of prediction of genomic selection in elite hybrid rye populations surpasses the accuracy of marker-assisted selection and is equally augmented by multiple field evaluation locations and test years. BMC Genomics (2014) 0.93
Initiating maize pre-breeding programs using genomic selection to harness polygenic variation from landrace populations. BMC Genomics (2016) 0.92
Genomic Prediction of Gene Bank Wheat Landraces. G3 (Bethesda) (2016) 0.88
The importance of phenotypic data analysis for genomic prediction - a case study comparing different spatial models in rye. BMC Genomics (2014) 0.88
Integrating Crop Growth Models with Whole Genome Prediction through Approximate Bayesian Computation. PLoS One (2015) 0.84
First insights into the genotype-phenotype map of phenotypic stability in rye. J Exp Bot (2015) 0.83
Optimization of genomic selection training populations with a genetic algorithm. Genet Sel Evol (2015) 0.82
Genomic Prediction of Testcross Performance in Canola (Brassica napus). PLoS One (2016) 0.82
Assessment of Genetic Heterogeneity in Structured Plant Populations Using Multivariate Whole-Genome Regression Models. Genetics (2015) 0.80
Performance of genomic prediction within and across generations in maritime pine. BMC Genomics (2016) 0.79
Accuracy of Genomic Prediction in Synthetic Populations Depending on the Number of Parents, Relatedness, and Ancestral Linkage Disequilibrium. Genetics (2016) 0.79
Improvement of Predictive Ability by Uniform Coverage of the Target Genetic Space. G3 (Bethesda) (2016) 0.78
An alternative covariance estimator to investigate genetic heterogeneity in populations. Genet Sel Evol (2015) 0.77
Using Bayesian Multilevel Whole Genome Regression Models for Partial Pooling of Training Sets in Genomic Prediction. G3 (Bethesda) (2015) 0.76
Genomic Prediction of Single Crosses in the Early Stages of a Maize Hybrid Breeding Pipeline. G3 (Bethesda) (2016) 0.75
Genomic assisted selection for enhancing line breeding: merging genomic and phenotypic selection in winter wheat breeding programs with preliminary yield trials. Theor Appl Genet (2016) 0.75
Genomic Prediction of Seed Quality Traits Using Advanced Barley Breeding Lines. PLoS One (2016) 0.75
Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Front Plant Sci (2016) 0.75
Persistency of Prediction Accuracy and Genetic Gain in Synthetic Populations Under Recurrent Genomic Selection. G3 (Bethesda) (2017) 0.75
Metabolic prediction of important agronomic traits in hybrid rice (Oryza sativa L.). Sci Rep (2016) 0.75
Enhancing genomic prediction with genome-wide association studies in multiparental maize populations. Heredity (Edinb) (2017) 0.75
Genomic prediction ability for yield-related traits in German winter barley elite material. Theor Appl Genet (2017) 0.75
Prediction of total genetic value using genome-wide dense marker maps. Genetics (2001) 41.25
Efficient methods to compute genomic predictions. J Dairy Sci (2008) 16.76
Efficient control of population structure in model organism association mapping. Genetics (2008) 12.32
Increased accuracy of artificial selection by using the realized relationship matrix. Genet Res (Camb) (2009) 8.38
Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nat Rev Genet (2009) 7.25
Predicting quantitative traits with regression models for dense molecular markers and pedigree. Genetics (2009) 5.18
Accuracy of predicting the genetic risk of disease using a genome-wide approach. PLoS One (2008) 4.96
Prediction of genetic values of quantitative traits in plant breeding using pedigree and molecular markers. Genetics (2010) 4.95
The impact of genetic relationship information on genomic breeding values in German Holstein cattle. Genet Sel Evol (2010) 3.87
Genomic selection. J Anim Breed Genet (2007) 3.86
Marker-assisted selection using ridge regression. Genet Res (2000) 3.67
Performance of genomic selection in mice. Genetics (2008) 3.48
Accuracy of genomic breeding values in multi-breed dairy cattle populations. Genet Sel Evol (2009) 3.14
Inbreeding in genome-wide selection. J Anim Breed Genet (2007) 2.81
Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nat Genet (2012) 2.70
Reliability of genomic predictions across multiple populations. Genetics (2009) 2.46
Genome-based prediction of testcross values in maize. Theor Appl Genet (2011) 2.29
Accuracy of genotypic value predictions for marker-based selection in biparental plant populations. Theor Appl Genet (2009) 2.09
Quantitative trait locus mapping based on resampling in a vast maize testcross experiment and its relevance to quantitative genetics for complex traits. Genetics (2004) 2.02
Accuracies of genomic breeding values in American Angus beef cattle using K-means clustering for cross-validation. Genet Sel Evol (2011) 1.78
The importance of information on relatives for the prediction of genomic breeding values and the implications for the makeup of reference data sets in livestock breeding schemes. Genet Sel Evol (2012) 1.66
Genome-enabled prediction of genetic values using radial basis function neural networks. Theor Appl Genet (2012) 1.55
Accuracy of genomic selection in European maize elite breeding populations. Theor Appl Genet (2011) 1.49
Genomewide selection in oil palm: increasing selection gain per unit time and cost with small populations. Theor Appl Genet (2008) 1.45
Correlation between testcross performance of lines at early and late selfing generations. Theor Appl Genet (1991) 1.44
Genomic prediction of hybrid performance in maize with models incorporating dominance and population specific marker effects. Theor Appl Genet (2012) 1.26
Are Q(ST)-F(ST) comparisons for natural populations meaningful? Mol Ecol (2008) 1.26
Testing for spatially divergent selection: comparing QST to FST. Genetics (2009) 1.17
Impact of selective genotyping in the training population on accuracy and bias of genomic selection. Theor Appl Genet (2012) 0.96
Prediction of testcross means and variances among F3 progenies of F1 crosses from testcross means and genetic distances of their parents in maize. Theor Appl Genet (1998) 0.89
The effect of population structure on the relationship between heterosis and heterozygosity at marker loci. Theor Appl Genet (1994) 0.89
Experimental demonstration of a causal relationship between heterogeneity of selection and genetic differentiation in quantitative traits. Evolution (2004) 0.88
Genic microsatellite markers in plants: features and applications. Trends Biotechnol (2005) 7.70
Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PLoS One (2012) 5.64
Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics (2005) 4.19
Whole-genome regression and prediction methods applied to plant and animal breeding. Genetics (2012) 4.13
Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol Biol (2002) 3.80
Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. Proc Natl Acad Sci U S A (2013) 3.48
Factors affecting accuracy from genomic selection in populations derived from multiple inbred lines: a Barley case study. Genetics (2009) 3.39
Genomics-assisted breeding for crop improvement. Trends Plant Sci (2005) 2.77
Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nat Genet (2012) 2.70
The organization and rate of evolution of wheat genomes are correlated with recombination rates along chromosome arms. Genome Res (2003) 2.62
Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley. BMC Genomics (2005) 2.40
Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat. Genome (2004) 2.39
Novel throughput phenotyping platforms in plant genetic studies. Trends Plant Sci (2007) 2.34
Comparison of mixed-model approaches for association mapping. Genetics (2008) 2.03
Quantitative trait locus mapping based on resampling in a vast maize testcross experiment and its relevance to quantitative genetics for complex traits. Genetics (2004) 2.02
Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking. Genetics (2012) 2.00
Different models of genetic variation and their effect on genomic evaluation. Genet Sel Evol (2011) 1.98
Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum. Proc Natl Acad Sci U S A (2011) 1.96
A common dataset for genomic analysis of livestock populations. G3 (Bethesda) (2012) 1.92
Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates. Proc Natl Acad Sci U S A (2003) 1.90
Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T. J Bacteriol (2010) 1.86
Linking drought-resistance mechanisms to drought avoidance in upland rice using a QTL approach: progress and new opportunities to integrate stomatal and mesophyll responses. J Exp Bot (2002) 1.85
Genomic prediction in maize breeding populations with genotyping-by-sequencing. G3 (Bethesda) (2013) 1.75
Linkage disequilibrium in European elite maize germplasm investigated with SSRs. Theor Appl Genet (2005) 1.71
The importance of information on relatives for the prediction of genomic breeding values and the implications for the makeup of reference data sets in livestock breeding schemes. Genet Sel Evol (2012) 1.66
Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.). BMC Genomics (2010) 1.62
Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize. Proc Natl Acad Sci U S A (2012) 1.61
Population structure and genetic diversity in a commercial maize breeding program assessed with SSR and SNP markers. Theor Appl Genet (2010) 1.61
Multiple-trait genomic selection methods increase genetic value prediction accuracy. Genetics (2012) 1.53
Heterosis for biomass-related traits in Arabidopsis investigated by quantitative trait loci analysis of the triple testcross design with recombinant inbred lines. Genetics (2007) 1.53
Population genetics of genomics-based crop improvement methods. Trends Genet (2011) 1.53
Validation of Dwarf8 polymorphisms associated with flowering time in elite European inbred lines of maize (Zea mays L.). Theor Appl Genet (2005) 1.44
Phytochemical profiles and antioxidant activity of wheat varieties. J Agric Food Chem (2003) 1.39
Association mapping and gene-gene interaction for stem rust resistance in CIMMYT spring wheat germplasm. Theor Appl Genet (2011) 1.39
Imputation of unordered markers and the impact on genomic selection accuracy. G3 (Bethesda) (2013) 1.39
Simulated data for genomic selection and genome-wide association studies using a combination of coalescent and gene drop methods. G3 (Bethesda) (2012) 1.38
Precision phenotyping of biomass accumulation in triticale reveals temporal genetic patterns of regulation. Sci Rep (2013) 1.38
Shrinkage estimation of the realized relationship matrix. G3 (Bethesda) (2012) 1.36
Quantitative trait loci mapping and the genetic basis of heterosis in maize and rice. Genetics (2008) 1.34
Intraspecific variation of recombination rate in maize. Genome Biol (2013) 1.32
Comparative DNA sequence analysis of mapped wheat ESTs reveals the complexity of genome relationships between rice and wheat. Funct Integr Genomics (2004) 1.32
Analysis of a triple testcross design with recombinant inbred lines reveals a significant role of epistasis in heterosis for biomass-related traits in Arabidopsis. Genetics (2007) 1.32
Integrating environmental covariates and crop modeling into the genomic selection framework to predict genotype by environment interactions. Theor Appl Genet (2013) 1.30
The emergence of whole genome association scans in barley. Curr Opin Plant Biol (2009) 1.30
Phenotyping for abiotic stress tolerance in maize. J Integr Plant Biol (2012) 1.29
Trends in genetic diversity among European maize cultivars and their parental components during the past 50 years. Theor Appl Genet (2005) 1.29
Genomic predictability of interconnected biparental maize populations. Genetics (2013) 1.27
Impact of marker ascertainment bias on genomic selection accuracy and estimates of genetic diversity. PLoS One (2013) 1.27
Genomic prediction of hybrid performance in maize with models incorporating dominance and population specific marker effects. Theor Appl Genet (2012) 1.26
Dissection of the genetic basis of heterosis in an elite maize hybrid by QTL mapping in an immortalized F2 population. Theor Appl Genet (2009) 1.24
New DArT markers for oat provide enhanced map coverage and global germplasm characterization. BMC Genomics (2009) 1.23
Mapping QTLs and QTL x environment interaction for CIMMYT maize drought stress program using factorial regression and partial least squares methods. Theor Appl Genet (2006) 1.23
Genetic diversity analysis of elite European maize (Zea mays L.) inbred lines using AFLP, SSR, and SNP markers reveals ascertainment bias for a subset of SNPs. Theor Appl Genet (2012) 1.23
Comparison of mixed-model approaches for association mapping in rapeseed, potato, sugar beet, maize, and Arabidopsis. BMC Genomics (2009) 1.22
Meta-analyses of QTL for grain yield and anthesis silking interval in 18 maize populations evaluated under water-stressed and well-watered environments. BMC Genomics (2013) 1.22
Extent and genome-wide distribution of linkage disequilibrium in commercial maize germplasm. Theor Appl Genet (2011) 1.21
Selection theory for marker-assisted backcrossing. Genetics (2005) 1.21
QTL mapping in three tropical maize populations reveals a set of constitutive and adaptive genomic regions for drought tolerance. Theor Appl Genet (2012) 1.20
QTL analysis of early stage heterosis for biomass in Arabidopsis. Theor Appl Genet (2010) 1.20
Mapping quantitative trait loci for preharvest sprouting resistance in white wheat. Theor Appl Genet (2009) 1.19
Assessment of alternative genotyping strategies to maximize imputation accuracy at minimal cost. Genet Sel Evol (2012) 1.19
Structural characterization and comparison of switchgrass ball-milled lignin before and after dilute acid pretreatment. Appl Biochem Biotechnol (2009) 1.15
Identification of drought-inducible genes and differentially expressed sequence tags in barley. Theor Appl Genet (2004) 1.13
Gametophytic and zygotic selection leads to segregation distortion through in vivo induction of a maternal haploid in maize. J Exp Bot (2013) 1.12
Multi-trait association mapping in sugar beet (Beta vulgaris L.). Theor Appl Genet (2008) 1.12
Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of Clostridium thermocellum. Appl Microbiol Biotechnol (2011) 1.12
Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations. Plant J (2009) 1.11
Performance of single nucleotide polymorphisms versus haplotypes for genome-wide association analysis in barley. PLoS One (2010) 1.11
QTL mapping of grain length in rice (Oryza sativa L.) using chromosome segment substitution lines. Genet Res (2006) 1.10
Genomic prediction of northern corn leaf blight resistance in maize with combined or separated training sets for heterotic groups. G3 (Bethesda) (2013) 1.10
High-density genotyping: an overkill for QTL mapping? Lessons learned from a case study in maize and simulations. Theor Appl Genet (2013) 1.10
Association mapping for pre-harvest sprouting resistance in white winter wheat. Theor Appl Genet (2012) 1.10
Training set optimization under population structure in genomic selection. Theor Appl Genet (2014) 1.09
Comparison of the observed with the simulated distributions of the parental genome contribution in two marker-assisted backcross programs in rice. Theor Appl Genet (2008) 1.07
Power to detect higher-order epistatic interactions in a metabolic pathway using a new mapping strategy. Genetics (2006) 1.07
Prediction of hybrid performance in maize using molecular markers and joint analyses of hybrids and parental inbreds. Theor Appl Genet (2009) 1.07
SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species. PLoS One (2013) 1.07
Comparative mapping of a major aluminum tolerance gene in sorghum and other species in the poaceae. Genetics (2004) 1.06
Comparison of whole-genome prediction models for traits with contrasting genetic architecture in a diversity panel of maize inbred lines. BMC Genomics (2012) 1.06
A consensus map for Ug99 stem rust resistance loci in wheat. Theor Appl Genet (2014) 1.05
Phytochemicals and antioxidant activity of milled fractions of different wheat varieties. J Agric Food Chem (2005) 1.05
Molecular characterization of diverse CIMMYT maize inbred lines from eastern and southern Africa using single nucleotide polymorphic markers. BMC Genomics (2012) 1.05
Quality control genotyping for assessment of genetic identity and purity in diverse tropical maize inbred lines. Theor Appl Genet (2012) 1.04
Recovering power in association mapping panels with variable levels of linkage disequilibrium. Genetics (2014) 1.02
The effect of genomic information on optimal contribution selection in livestock breeding programs. Genet Sel Evol (2013) 1.02