Published in Front Microbiol on February 13, 2013
Biofilm Formation As a Response to Ecological Competition. PLoS Biol (2015) 2.42
Polybacterial human disease: the ills of social networking. Trends Microbiol (2014) 1.01
Environmental dissemination of antibiotic resistance genes and correlation to anthropogenic contamination with antibiotics. Infect Ecol Epidemiol (2015) 0.85
Bacterial danger sensing. J Mol Biol (2015) 0.82
The role of biofilms as environmental reservoirs of antibiotic resistance. Front Microbiol (2015) 0.81
Multifaceted Interfaces of Bacterial Competition. J Bacteriol (2016) 0.79
Microarray analysis of the transcriptional responses of Porphyromonas gingivalis to polyphosphate. BMC Microbiol (2014) 0.79
Leveraging ecological theory to guide natural product discovery. J Ind Microbiol Biotechnol (2015) 0.78
Multiple Pathways of Genome Plasticity Leading to Development of Antibiotic Resistance. Antibiotics (Basel) (2013) 0.78
The multiple roles of antibiotics and antibiotic resistance in nature. Front Microbiol (2013) 0.78
Effects of Secondary Plant Metabolites on Microbial Populations: Changes in Community Structure and Metabolic Activity in Contaminated Environments. Int J Mol Sci (2016) 0.77
Chronic lung infection by Pseudomonas aeruginosa biofilm is cured by L-Methionine in combination with antibiotic therapy. Sci Rep (2015) 0.77
Experimental Simulation of the Effects of an Initial Antibiotic Treatment on a Subsequent Treatment after Initial Therapy Failure. Antibiotics (Basel) (2014) 0.76
Cyanide Toxicity to Burkholderia cenocepacia Is Modulated by Polymicrobial Communities and Environmental Factors. Front Microbiol (2016) 0.76
Sublethal Concentrations of Antibiotics Cause Shift to Anaerobic Metabolism in Listeria monocytogenes and Induce Phenotypes Linked to Antibiotic Tolerance. Front Microbiol (2016) 0.76
Induction of a stable sigma factor SigR by translation-inhibiting antibiotics confers resistance to antibiotics. Sci Rep (2016) 0.75
Relationship between antibiotic resistance genes and metals in residential soil samples from Western Australia. Environ Sci Pollut Res Int (2016) 0.75
Ecological implications of hypoxia-triggered shifts in secondary metabolism. Environ Microbiol (2017) 0.75
Astrobiology as a framework for investigating antibiotic susceptibility: a study of Halomonas hydrothermalis. J R Soc Interface (2017) 0.75
Pseudomonas aeruginosa-derived rhamnolipids and other detergents modulate colony morphotype and motility in the Burkholderia cepacia complex. J Bacteriol (2017) 0.75
Galapagos III World Evolution Summit: why evolution matters. Evolution (N Y) (2013) 0.75
Interactions between Closely Related Bacterial Strains Are Revealed by Deep Transcriptome Sequencing. Appl Environ Microbiol (2015) 0.75
Effects of actinomycete secondary metabolites on sediment microbial communities. Appl Environ Microbiol (2016) 0.75
Predation and selection for antibiotic resistance in natural environments. Evol Appl (2016) 0.75
Bacterial persistence as a phenotypic switch. Science (2004) 15.80
A common mechanism of cellular death induced by bactericidal antibiotics. Cell (2007) 12.92
Antibiotic resistance of bacteria in biofilms. Lancet (2001) 12.62
Persister cells, dormancy and infectious disease. Nat Rev Microbiol (2006) 8.35
Phenotypic diversity, population growth, and information in fluctuating environments. Science (2005) 8.21
Origins and evolution of antibiotic resistance. Microbiol Mol Biol Rev (2010) 7.35
Sampling the antibiotic resistome. Science (2006) 7.27
Persister cells. Annu Rev Microbiol (2010) 7.24
Oxidative stress responses in Escherichia coli and Salmonella typhimurium. Microbiol Rev (1991) 6.86
Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli. Genetics (2001) 6.29
The TetR family of transcriptional repressors. Microbiol Mol Biol Rev (2005) 6.02
Physiological heterogeneity in biofilms. Nat Rev Microbiol (2008) 5.89
Specialized persister cells and the mechanism of multidrug tolerance in Escherichia coli. J Bacteriol (2004) 5.82
Aminoglycoside antibiotic-inactivating enzymes in actinomycetes similar to those present in clinical isolates of antibiotic-resistant bacteria. Proc Natl Acad Sci U S A (1973) 5.20
Vancomycin resistance in gram-positive cocci. Clin Infect Dis (2006) 4.95
Aminoglycoside antibiotics induce bacterial biofilm formation. Nature (2005) 4.93
Antibiotic resistance is ancient. Nature (2011) 4.83
Functional characterization of the antibiotic resistance reservoir in the human microflora. Science (2009) 4.78
Mechanisms underlying expression of Tn10 encoded tetracycline resistance. Annu Rev Microbiol (1994) 4.69
How antibiotics kill bacteria: from targets to networks. Nat Rev Microbiol (2010) 4.65
hipA, a newly recognized gene of Escherichia coli K-12 that affects frequency of persistence after inhibition of murein synthesis. J Bacteriol (1983) 4.59
Self-generated diversity produces "insurance effects" in biofilm communities. Proc Natl Acad Sci U S A (2004) 4.54
Biofilms and planktonic cells of Pseudomonas aeruginosa have similar resistance to killing by antimicrobials. J Bacteriol (2001) 4.49
Mistranslation of membrane proteins and two-component system activation trigger antibiotic-mediated cell death. Cell (2008) 4.47
Communication in bacteria: an ecological and evolutionary perspective. Nat Rev Microbiol (2006) 4.44
SOS response promotes horizontal dissemination of antibiotic resistance genes. Nature (2003) 4.42
Call of the wild: antibiotic resistance genes in natural environments. Nat Rev Microbiol (2010) 4.22
Mechanisms of resistance to quinolones: target alterations, decreased accumulation and DNA gyrase protection. J Antimicrob Chemother (2003) 4.20
SOS response induction by beta-lactams and bacterial defense against antibiotic lethality. Science (2004) 4.20
Food animals and antimicrobials: impacts on human health. Clin Microbiol Rev (2011) 4.15
The antibiotic resistome: the nexus of chemical and genetic diversity. Nat Rev Microbiol (2007) 4.14
Metabolite-enabled eradication of bacterial persisters by aminoglycosides. Nature (2011) 4.06
Persisters: a distinct physiological state of E. coli. BMC Microbiol (2006) 4.03
Gyrase inhibitors induce an oxidative damage cellular death pathway in Escherichia coli. Mol Syst Biol (2007) 3.98
The shared antibiotic resistome of soil bacteria and human pathogens. Science (2012) 3.98
Mutation as a stress response and the regulation of evolvability. Crit Rev Biochem Mol Biol (2007) 3.66
A field guide to bacterial swarming motility. Nat Rev Microbiol (2010) 3.60
Bacterial persistence by RNA endonucleases. Proc Natl Acad Sci U S A (2011) 3.52
Bacterial charity work leads to population-wide resistance. Nature (2010) 3.50
Bacteria subsisting on antibiotics. Science (2008) 3.47
Inhibition of mutation and combating the evolution of antibiotic resistance. PLoS Biol (2005) 3.47
Interspecies gene exchange in bacteria: the role of SOS and mismatch repair systems in evolution of species. Cell (1995) 3.30
A polymicrobial perspective of pulmonary infections exposes an enigmatic pathogen in cystic fibrosis patients. Proc Natl Acad Sci U S A (2008) 3.28
Non-inherited antibiotic resistance. Nat Rev Microbiol (2006) 3.25
Transcriptional modulation of bacterial gene expression by subinhibitory concentrations of antibiotics. Proc Natl Acad Sci U S A (2002) 3.25
Nutritional cues control Pseudomonas aeruginosa multicellular behavior in cystic fibrosis sputum. J Bacteriol (2007) 3.22
Ciprofloxacin causes persister formation by inducing the TisB toxin in Escherichia coli. PLoS Biol (2010) 3.12
Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication. Mol Microbiol (2003) 3.09
Engineered bacteriophage targeting gene networks as adjuvants for antibiotic therapy. Proc Natl Acad Sci U S A (2009) 3.01
Bacterial persistence: a model of survival in changing environments. Genetics (2005) 2.97
Signaling-mediated bacterial persister formation. Nat Chem Biol (2012) 2.96
The world of subinhibitory antibiotic concentrations. Curr Opin Microbiol (2006) 2.89
Global impact of mature biofilm lifestyle on Escherichia coli K-12 gene expression. Mol Microbiol (2004) 2.86
Rethinking 'secondary' metabolism: physiological roles for phenazine antibiotics. Nat Chem Biol (2006) 2.86
Antibiotic resistance is prevalent in an isolated cave microbiome. PLoS One (2012) 2.84
Antibiotics as signalling molecules. Philos Trans R Soc Lond B Biol Sci (2007) 2.74
Extracellular DNA chelates cations and induces antibiotic resistance in Pseudomonas aeruginosa biofilms. PLoS Pathog (2008) 2.71
H2S: a universal defense against antibiotics in bacteria. Science (2011) 2.69
Susceptibility of Pseudomonas aeruginosa and Escherichia coli biofilms towards ciprofloxacin: effect of specific growth rate. J Antimicrob Chemother (1991) 2.47
Aeons of distress: an evolutionary perspective on the bacterial SOS response. FEMS Microbiol Rev (2007) 2.40
Endogenous nitric oxide protects bacteria against a wide spectrum of antibiotics. Science (2009) 2.32
Bacterial persistence and toxin-antitoxin loci. Annu Rev Microbiol (2012) 2.28
SOS response induces persistence to fluoroquinolones in Escherichia coli. PLoS Genet (2009) 2.28
The developmental model of microbial biofilms: ten years of a paradigm up for review. Trends Microbiol (2009) 2.23
Environmental pollution by antibiotics and by antibiotic resistance determinants. Environ Pollut (2009) 2.12
Discerning the complexity of community interactions using a Drosophila model of polymicrobial infections. PLoS Pathog (2008) 2.09
The bacterial LexA transcriptional repressor. Cell Mol Life Sci (2009) 2.07
Gene regulation by tetracyclines. Constraints of resistance regulation in bacteria shape TetR for application in eukaryotes. Eur J Biochem (2003) 2.03
Endogenous oxidative stress produces diversity and adaptability in biofilm communities. Proc Natl Acad Sci U S A (2008) 2.00
Swarming of Pseudomonas aeruginosa is a complex adaptation leading to increased production of virulence factors and antibiotic resistance. J Bacteriol (2008) 1.98
Single-cell protein induction dynamics reveals a period of vulnerability to antibiotics in persister bacteria. Proc Natl Acad Sci U S A (2008) 1.98
The role of natural environments in the evolution of resistance traits in pathogenic bacteria. Proc Biol Sci (2009) 1.94
Role of reactive oxygen species in antibiotic action and resistance. Curr Opin Microbiol (2009) 1.92
Combinations of antibiotics and nonantibiotic drugs enhance antimicrobial efficacy. Nat Chem Biol (2011) 1.84
Bacterial quorum sensing and metabolic incentives to cooperate. Science (2012) 1.82
Enzymes that inactivate antibiotics in transit to their targets. Ann N Y Acad Sci (1974) 1.76
Antibiotic resistance: consequences of inaction. Clin Infect Dis (2001) 1.74
Biogenic ammonia modifies antibiotic resistance at a distance in physically separated bacteria. Mol Microbiol (2011) 1.74
Complete and SOS-mediated response of Staphylococcus aureus to the antibiotic ciprofloxacin. J Bacteriol (2006) 1.73
Evolutionary theory of bacterial quorum sensing: when is a signal not a signal? Philos Trans R Soc Lond B Biol Sci (2007) 1.69
The truth about antibiotics. Int J Med Microbiol (2006) 1.68
The role of antibiotics and antibiotic resistance in nature. Environ Microbiol (2009) 1.66
Culture enriched molecular profiling of the cystic fibrosis airway microbiome. PLoS One (2011) 1.61
A brief history of the antibiotic era: lessons learned and challenges for the future. Front Microbiol (2010) 1.56
Killing by ampicillin and ofloxacin induces overlapping changes in Escherichia coli transcription profile. Antimicrob Agents Chemother (2004) 1.55
Expanding the soil antibiotic resistome: exploring environmental diversity. Curr Opin Microbiol (2007) 1.53
Low levels of β-lactam antibiotics induce extracellular DNA release and biofilm formation in Staphylococcus aureus. MBio (2012) 1.51
Bacillus anthracis-derived nitric oxide is essential for pathogen virulence and survival in macrophages. Proc Natl Acad Sci U S A (2008) 1.49
Swarming motility: a multicellular behaviour conferring antimicrobial resistance. Environ Microbiol (2008) 1.46
Swarm-cell differentiation in Salmonella enterica serovar typhimurium results in elevated resistance to multiple antibiotics. J Bacteriol (2003) 1.45
Chemical signaling among bacteria and its inhibition. Chem Biol (2003) 1.42
Inducible SOS response system of DNA repair and mutagenesis in Escherichia coli. Int J Biol Sci (2008) 1.40
Bacterial stress responses as determinants of antimicrobial resistance. J Antimicrob Chemother (2012) 1.39
Introducing the parvome: bioactive compounds in the microbial world. ACS Chem Biol (2011) 1.39
In vitro effects of antimicrobial agents on planktonic and biofilm forms of Staphylococcus lugdunensis clinical isolates. Antimicrob Agents Chemother (2006) 1.37
Induction of SOS genes in Escherichia coli and mutagenesis in Salmonella typhimurium by fluoroquinolones. Mutagenesis (1990) 1.36
Phosphorylation of streptomycin and dihydrostreptomycin by Streptomyces. Enzymatic synthesis of different diphosphorylated derivatives. J Biol Chem (1973) 1.35
Metabolic differentiation in actively swarming Salmonella. Mol Microbiol (2004) 1.35
Antibiotic-induced biofilm formation. Int J Artif Organs (2011) 1.33
The chromosomal toxin gene yafQ is a determinant of multidrug tolerance for Escherichia coli growing in a biofilm. Antimicrob Agents Chemother (2009) 1.33
A catalog of reference genomes from the human microbiome. Science (2010) 8.10
Communication in bacteria: an ecological and evolutionary perspective. Nat Rev Microbiol (2006) 4.44
Just-in-time transcription program in metabolic pathways. Nat Genet (2004) 4.30
A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat Methods (2006) 3.95
Programming gene expression with combinatorial promoters. Mol Syst Biol (2007) 3.29
A polymicrobial perspective of pulmonary infections exposes an enigmatic pathogen in cystic fibrosis patients. Proc Natl Acad Sci U S A (2008) 3.28
Transcriptional modulation of bacterial gene expression by subinhibitory concentrations of antibiotics. Proc Natl Acad Sci U S A (2002) 3.25
Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication. Mol Microbiol (2003) 3.09
Discerning the complexity of community interactions using a Drosophila model of polymicrobial infections. PLoS Pathog (2008) 2.09
Genomic profiling of iron-responsive genes in Salmonella enterica serovar typhimurium by high-throughput screening of a random promoter library. J Bacteriol (2003) 1.88
pfs-dependent regulation of autoinducer 2 production in Salmonella enterica serovar Typhimurium. J Bacteriol (2002) 1.76
Individuality in bacteria. Annu Rev Genet (2008) 1.65
Culture enriched molecular profiling of the cystic fibrosis airway microbiome. PLoS One (2011) 1.61
Environmental regulation of Pseudomonas aeruginosa PAO1 Las and Rhl quorum-sensing systems. J Bacteriol (2007) 1.58
Cystic fibrosis: a polymicrobial infectious disease. Future Microbiol (2006) 1.52
Phenotypic heterogeneity of Pseudomonas aeruginosa populations in a cystic fibrosis patient. PLoS One (2013) 1.49
Swarm-cell differentiation in Salmonella enterica serovar typhimurium results in elevated resistance to multiple antibiotics. J Bacteriol (2003) 1.45
The Streptococcus milleri group--an unrecognized cause of disease in cystic fibrosis: a case series and literature review. Pediatr Pulmonol (2008) 1.39
Metabolic differentiation in actively swarming Salmonella. Mol Microbiol (2004) 1.35
The relevance of the polymicrobial nature of airway infection in the acute and chronic management of patients with cystic fibrosis. Curr Opin Investig Drugs (2009) 1.19
Trait-to-gene: a computational method for predicting the function of uncharacterized genes. Curr Biol (2003) 1.16
Brain microbial populations in HIV/AIDS: α-proteobacteria predominate independent of host immune status. PLoS One (2013) 1.15
The polymicrobial nature of airway infections in cystic fibrosis: Cangene Gold Medal Lecture. Can J Microbiol (2011) 1.15
The loss of topography in the microbial communities of the upper respiratory tract in the elderly. Ann Am Thorac Soc (2014) 1.15
Dual effects of MLS antibiotics: transcriptional modulation and interactions on the ribosome. Chem Biol (2004) 1.12
The YebC family protein PA0964 negatively regulates the Pseudomonas aeruginosa quinolone signal system and pyocyanin production. J Bacteriol (2008) 1.11
The dynamic microbe: green fluorescent protein brings bacteria to light. Mol Microbiol (2002) 1.10
McKay agar enables routine quantification of the 'Streptococcus milleri' group in cystic fibrosis patients. J Med Microbiol (2010) 1.07
The genus Prevotella in cystic fibrosis airways. Anaerobe (2010) 1.07
A global metabolic shift is linked to Salmonella multicellular development. PLoS One (2010) 1.03
The mviN homolog in Burkholderia pseudomallei is essential for viability and virulence. Can J Microbiol (2006) 1.00
Bringing order to a complex molecular machine: the assembly of the bacterial flagella. Biochim Biophys Acta (2007) 0.99
L-Cysteine is required for induced antibiotic resistance in actively swarming Salmonella enterica serovar Typhimurium. Microbiology (2008) 0.96
Drosophila melanogaster as an animal model for the study of Pseudomonas aeruginosa biofilm infections in vivo. PLoS Pathog (2011) 0.96
Cysteine biosynthesis, oxidative stress and antibiotic resistance in Salmonella typhimurium. Res Microbiol (2010) 0.95
Genomic instability in regions adjacent to a highly conserved pch prophage in Escherichia coli O157:H7 generates diversity in expression patterns of the LEE pathogenicity island. J Bacteriol (2009) 0.95
Prevalence of surface swarming behavior in Salmonella. J Bacteriol (2005) 0.94
Characterization of Streptococcus milleri group isolates from expectorated sputum of adult patients with cystic fibrosis. J Clin Microbiol (2009) 0.91
Hybrid sensor kinase PA1611 in Pseudomonas aeruginosa regulates transitions between acute and chronic infection through direct interaction with RetS. Mol Microbiol (2013) 0.91
Twenty-five-year outbreak of Pseudomonas aeruginosa infecting individuals with cystic fibrosis: identification of the prairie epidemic strain. J Clin Microbiol (2014) 0.90
Macrolide and clindamycin resistance in Streptococcus milleri group isolates from the airways of cystic fibrosis patients. Antimicrob Agents Chemother (2010) 0.90
The Streptococcus milleri population of a cystic fibrosis clinic reveals patient specificity and intraspecies diversity. J Clin Microbiol (2010) 0.90
The cystic fibrosis airway microbiome. Curr Opin Pulm Med (2012) 0.89
Chemical interactions between organisms in microbial communities. Contrib Microbiol (2009) 0.89
Identification of mutants with altered phenazine production in Pseudomonas aeruginosa. J Med Microbiol (2010) 0.89
Extracellular DNA-induced antimicrobial peptide resistance in Salmonella enterica serovar Typhimurium. BMC Microbiol (2013) 0.88
Coordinated regulation of two independent cell-cell signaling systems and swarmer differentiation in Salmonella enterica serovar Typhimurium. J Bacteriol (2006) 0.88
Modulation of secreted virulence factor genes by subinhibitory concentrations of antibiotics in Pseudomonas aeruginosa. J Microbiol (2008) 0.88
Ecobiotherapy Rich in Firmicutes Decreases Susceptibility to Colitis in a Humanized Gnotobiotic Mouse Model. Inflamm Bowel Dis (2015) 0.86
Complex Pseudomonas population structure in cystic fibrosis airway infections. Am J Respir Crit Care Med (2011) 0.85
Evolutionary loss of the rdar morphotype in Salmonella as a result of high mutation rates during laboratory passage. ISME J (2008) 0.83
Modulation of Salmonella gene expression by subinhibitory concentrations of quinolones. J Antibiot (Tokyo) (2010) 0.83
Integration of transcriptional inputs at promoters of the arabinose catabolic pathway. BMC Syst Biol (2010) 0.82
Deciphering the pathogenesis of NSAID enteropathy using proton pump inhibitors and a hydrogen sulfide-releasing NSAID. Am J Physiol Gastrointest Liver Physiol (2015) 0.81
Draft Genome Sequence of Burkholderia dolosa PC543 Isolated from Cystic Fibrosis Airways. Genome Announc (2014) 0.81
Effects of mesalamine (5-aminosalicylic acid) on bacterial gene expression. Inflamm Bowel Dis (2009) 0.81
The identification of functional motifs in temporal gene expression analysis. Evol Bioinform Online (2007) 0.79
Hydrogen sulphide protects against NSAID-enteropathy through modulation of bile and the microbiota. Br J Pharmacol (2014) 0.78
NSAID enteropathy and bacteria: a complicated relationship. J Gastroenterol (2015) 0.78
Long-term survival of Salmonella enterica serovar Typhimurium reveals an infectious state that is underrepresented on laboratory media containing bile salts. Appl Environ Microbiol (2009) 0.78
Culture and molecular-based profiles show shifts in bacterial communities of the upper respiratory tract that occur with age. ISME J (2015) 0.78
Host cytokine responses distinguish invasive from airway isolates of the Streptococcus milleri/anginosis group. BMC Infect Dis (2014) 0.76
The attenuated virulence of a Burkholderia cenocepacia paaABCDE mutant is due to inhibition of quorum sensing by release of phenylacetic acid. Mol Microbiol (2014) 0.76
Comprehensive analysis of gene-environmental interactions with temporal gene expression profiles in Pseudomonas aeruginosa. PLoS One (2012) 0.76
Azithromycin paradox in the treatment of cystic fibrosis airway disease. Future Microbiol (2010) 0.76
A multidimensional approach to the management of severe asthma: Inflammometry, molecular microbiology and bronchial thermoplasty. Can Respir J (2015) 0.75
Transcriptional regulation of sdiA by cAMP-receptor protein, LeuO, and environmental signals in Salmonella enterica serovar Typhimurium. Can J Microbiol (2011) 0.75
Changes in gut microbiota during development of compulsive checking and locomotor sensitization induced by chronic treatment with the dopamine agonist quinpirole. Behav Pharmacol (2017) 0.75
The Nasopharyngeal Microbiota of Children with Respiratory Infections in Botswana. Pediatr Infect Dis J (2017) 0.75