Published in Gene on April 19, 2013
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A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes. Genome Biol (2009) 1.41
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Identification of short 'eukaryotic' Okazaki fragments synthesized from a prokaryotic replication origin. EMBO Rep (2003) 1.39
An archaeal orthologue of the universal protein Kae1 is an iron metalloprotein which exhibits atypical DNA-binding properties and apurinic-endonuclease activity in vitro. Nucleic Acids Res (2007) 1.36
Four newly isolated fuselloviruses from extreme geothermal environments reveal unusual morphologies and a possible interviral recombination mechanism. Environ Microbiol (2009) 1.27
Construction of a shuttle vector for, and spheroplast transformation of, the hyperthermophilic archaeon Pyrococcus abyssi. Appl Environ Microbiol (2002) 1.26
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DNA bending, compaction and negative supercoiling by the architectural protein Sso7d of Sulfolobus solfataricus. Nucleic Acids Res (2002) 1.14
Intricate interactions within the ccd plasmid addiction system. J Biol Chem (2001) 1.13
The Sulfolobus rod-shaped virus 2 encodes a prominent structural component of the unique virion release system in Archaea. Virology (2010) 1.13
A DNA topoisomerase IB in Thaumarchaeota testifies for the presence of this enzyme in the last common ancestor of Archaea and Eucarya. Biol Direct (2008) 1.13
Diversity of virus-host systems in hypersaline Lake Retba, Senegal. Environ Microbiol (2010) 1.12
Virus-like vesicles and extracellular DNA produced by hyperthermophilic archaea of the order Thermococcales. Res Microbiol (2008) 1.12
Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria. J Mol Biol (2010) 1.12
Global regulation of gene expression by OxyR in an important human opportunistic pathogen. Nucleic Acids Res (2012) 1.10
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The Mre11 protein interacts with both Rad50 and the HerA bipolar helicase and is recruited to DNA following gamma irradiation in the archaeon Sulfolobus acidocaldarius. BMC Mol Biol (2008) 1.10
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Simple and elegant design of a virion egress structure in Archaea. Proc Natl Acad Sci U S A (2011) 1.04
Viral proteins functioning in organelles: a cryptic origin? Trends Microbiol (2005) 1.04
Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins. Nucleic Acids Res (2010) 1.04
Massive activation of archaeal defense genes during viral infection. J Virol (2013) 1.03
Global phylogenomic analysis disentangles the complex evolutionary history of DNA replication in archaea. Genome Biol Evol (2014) 1.03
Plasmids, viruses and virus-like membrane vesicles from Thermococcales. Biochem Soc Trans (2011) 1.03
Ss-LrpB, a novel Lrp-like regulator of Sulfolobus solfataricus P2, binds cooperatively to three conserved targets in its own control region. Mol Microbiol (2004) 1.03
In vitro biosynthesis of a universal t6A tRNA modification in Archaea and Eukarya. Nucleic Acids Res (2012) 1.03
Effect of iclR and arcA knockouts on biomass formation and metabolic fluxes in Escherichia coli K12 and its implications on understanding the metabolism of Escherichia coli BL21 (DE3). BMC Microbiol (2011) 1.03
Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses. Nat Commun (2013) 1.02
Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon. Open Biol (2013) 1.02
Identification, purification, and characterization of an eukaryotic-like phosphopantetheine adenylyltransferase (coenzyme A biosynthetic pathway) in the hyperthermophilic archaeon Pyrococcus abyssi. J Biol Chem (2003) 1.01
Insights into dynamics of mobile genetic elements in hyperthermophilic environments from five new Thermococcus plasmids. PLoS One (2013) 1.01
Evidence for a Xer/dif system for chromosome resolution in archaea. PLoS Genet (2010) 1.01
Archaeal virus with exceptional virion architecture and the largest single-stranded DNA genome. Proc Natl Acad Sci U S A (2012) 1.01
Reverse gyrase recruitment to DNA after UV light irradiation in Sulfolobus solfataricus. J Biol Chem (2004) 1.00
Selective degradation of reverse gyrase and DNA fragmentation induced by alkylating agent in the archaeon Sulfolobus solfataricus. Nucleic Acids Res (2006) 1.00
The arginine regulon of Escherichia coli: whole-system transcriptome analysis discovers new genes and provides an integrated view of arginine regulation. Microbiology (2006) 1.00
Functional assignment of KEOPS/EKC complex subunits in the biosynthesis of the universal t6A tRNA modification. Nucleic Acids Res (2013) 0.99
Unification of the globally distributed spindle-shaped viruses of the Archaea. J Virol (2013) 0.99
Hyperthermophilic archaea produce membrane vesicles that can transfer DNA. Environ Microbiol Rep (2012) 0.98
Postcards from the edge: structural genomics of archaeal viruses. Adv Virus Res (2012) 0.98
Crenarchaeal CdvA forms double-helical filaments containing DNA and interacts with ESCRT-III-like CdvB. PLoS One (2011) 0.98
Molecular diversity of new Thermococcales isolates from a single area of hydrothermal deep-sea vents as revealed by randomly amplified polymorphic DNA fingerprinting and 16S rRNA gene sequence analysis. Appl Environ Microbiol (2004) 0.97
The rolling-circle plasmid pTN1 from the hyperthermophilic archaeon Thermococcus nautilus. Mol Microbiol (2007) 0.97
Structural insights into a new homodimeric self-activated GTPase family. EMBO Rep (2007) 0.97
Acidianus filamentous virus 1 coat proteins display a helical fold spanning the filamentous archaeal viruses lineage. Proc Natl Acad Sci U S A (2009) 0.97
The Lrp family of transcription regulators in archaea. Archaea (2010) 0.96
Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences. Open Biol (2013) 0.96
Purine and pyrimidine-specific repression of the Escherichia coli carAB operon are functionally and structurally coupled. J Mol Biol (2004) 0.96
The universal Kae1 protein and the associated Bud32 kinase (PRPK), a mysterious protein couple probably essential for genome maintenance in Archaea and Eukarya. Biochem Soc Trans (2009) 0.95
The legacy of Carl Woese and Wolfram Zillig: from phylogeny to landmark discoveries. Nat Rev Microbiol (2013) 0.94
Crystal structure of AFV3-109, a highly conserved protein from crenarchaeal viruses. Virol J (2007) 0.94
Genomic context analysis in Archaea suggests previously unrecognized links between DNA replication and translation. Genome Biol (2008) 0.94
Genetic analysis of DNA repair in the hyperthermophilic archaeon, Thermococcus kodakaraensis. Genes Genet Syst (2010) 0.94
Genomewide and biochemical analyses of DNA-binding activity of Cdc6/Orc1 and Mcm proteins in Pyrococcus sp. Nucleic Acids Res (2007) 0.94
Analysis of the DNA-binding sequence specificity of the archaeal transcriptional regulator Ss-LrpB from Sulfolobus solfataricus by systematic mutagenesis and high resolution contact probing. Nucleic Acids Res (2006) 0.94
Transcription regulation in thermophilic bacteria: high resolution contact probing of Bacillus stearothermophilus and Thermotoga neapolitana arginine repressor-operator interactions. J Mol Biol (2002) 0.93
First insights into the entry process of hyperthermophilic archaeal viruses. J Virol (2013) 0.93
Ss-LrpB from Sulfolobus solfataricus condenses about 100 base pairs of its own operator DNA into globular nucleoprotein complexes. J Biol Chem (2006) 0.92
A highly divergent archaeo-eukaryotic primase from the Thermococcus nautilus plasmid, pTN2. Nucleic Acids Res (2014) 0.92
Ss-LrpB, a transcriptional regulator from Sulfolobus solfataricus, regulates a gene cluster with a pyruvate ferredoxin oxidoreductase-encoding operon and permease genes. Mol Microbiol (2008) 0.92
Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes. Extremophiles (2014) 0.92
Novel archaeal plasmid pAH1 and its interactions with the lipothrixvirus AFV1. Mol Microbiol (2008) 0.90
LmrR-mediated gene regulation of multidrug resistance in Lactococcus lactis. Microbiology (2011) 0.89
Physiological responses of the hyperthermophilic archaeon "Pyrococcus abyssi" to DNA damage caused by ionizing radiation. J Bacteriol (2003) 0.89
Crystal structure of an intact type II DNA topoisomerase: insights into DNA transfer mechanisms. Structure (2008) 0.89
Hyperthermophilic Thermotoga arginine repressor binding to full-length cognate and heterologous arginine operators and to half-site targets. J Mol Biol (2003) 0.88
Genes of de novo pyrimidine biosynthesis from the hyperthermoacidophilic crenarchaeote Sulfolobus acidocaldarius: novel organization in a bipolar operon. J Bacteriol (2002) 0.88
Functional interaction of reverse gyrase with single-strand binding protein of the archaeon Sulfolobus. Nucleic Acids Res (2005) 0.88
High resolution contact probing of the Lrp-like DNA-binding protein Ss-Lrp from the hyperthermoacidophilic crenarchaeote Sulfolobus solfataricus P2. Mol Microbiol (2002) 0.88