Published in Nucleic Acids Res on April 29, 2013
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Myc regulates the transcription of the PRC2 gene to control the expression of developmental genes in embryonic stem cells. Mol Cell Biol (2011) 1.28
Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells. Nucleic Acids Res (2011) 1.23
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Genomic maps and comparative analysis of histone modifications in human and mouse. Cell (2005) 18.96
Genome-wide analysis of estrogen receptor binding sites. Nat Genet (2006) 18.63
RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science (2007) 18.59
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Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell (2004) 16.15
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Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (2010) 12.39
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EGASP: the human ENCODE Genome Annotation Assessment Project. Genome Biol (2006) 7.06
Biological function of unannotated transcription during the early development of Drosophila melanogaster. Nat Genet (2006) 6.20
Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays. Genome Res (2005) 6.08
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Global transcription in pluripotent embryonic stem cells. Cell Stem Cell (2008) 5.81
Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells. Mol Cell (2006) 4.51
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Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions. Genome Res (2007) 4.33
Chd1 regulates open chromatin and pluripotency of embryonic stem cells. Nature (2009) 4.13
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets. Genome Res (2008) 4.08
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs. Genome Res (2012) 3.83
Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution. Genome Res (2007) 3.82
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Structured RNAs in the ENCODE selected regions of the human genome. Genome Res (2007) 2.69
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Nonsense-mediated mRNA decay affects nonsense transcript levels and governs response of cystic fibrosis patients to gentamicin. J Clin Invest (2007) 1.73
Nuclear lamins: key regulators of nuclear structure and activities. J Cell Mol Med (2009) 1.70
Reconstructing the DNA methylation maps of the Neandertal and the Denisovan. Science (2014) 1.69
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Global epigenetic changes during somatic cell reprogramming to iPS cells. J Mol Cell Biol (2011) 1.28
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Chromatin and nuclear architecture in the nervous system. Trends Neurosci (2008) 1.18
Stress-induced epigenetic transcriptional memory of acetylcholinesterase by HDAC4. Proc Natl Acad Sci U S A (2012) 1.16
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Pluripotency-related, valproic acid (VPA)-induced genome-wide histone H3 lysine 9 (H3K9) acetylation patterns in embryonic stem cells. J Biol Chem (2011) 1.05
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An effort to make sense of antisense transcription in bacteria. RNA Biol (2012) 1.04
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HMGN1 modulates nucleosome occupancy and DNase I hypersensitivity at the CpG island promoters of embryonic stem cells. Mol Cell Biol (2013) 0.95
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Elucidating the temporal dynamics of chromatin-associated protein release upon DNA digestion by quantitative proteomic approach. J Proteomics (2012) 0.90
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Measuring the dynamics of chromatin proteins during differentiation. Methods Mol Biol (2013) 0.77
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