Published in Nucleic Acids Res on July 01, 2005
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COFOLD: an RNA secondary structure prediction method that takes co-transcriptional folding into account. Nucleic Acids Res (2013) 0.89
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Transient RNA structure features are evolutionarily conserved and can be computationally predicted. Nucleic Acids Res (2013) 0.80
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A domain-based model for predicting large and complex pseudoknotted structures. RNA Biol (2012) 0.79
An implementation of the Gillespie algorithm for RNA kinetics with logarithmic time update. Nucleic Acids Res (2015) 0.78
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A variation of the translation attenuation model can explain the inducible regulation of the pBC16 tetracycline resistance gene in Bacillus subtilis. J Bacteriol (2006) 0.78
Modelling toehold-mediated RNA strand displacement. Biophys J (2015) 0.78
Global transcriptional response to heat shock of the legume symbiont Mesorhizobium loti MAFF303099 comprises extensive gene downregulation. DNA Res (2013) 0.78
Measurements of translation initiation from all 64 codons in E. coli. Nucleic Acids Res (2017) 0.77
Structural analysis of adenovirus VAI RNA defines the mechanism of inhibition of PKR. Biophys J (2015) 0.77
RNA folding pathways and kinetics using 2D energy landscapes. J Math Biol (2014) 0.77
Thermodynamics of RNA structures by Wang-Landau sampling. Bioinformatics (2010) 0.76
Design, synthesis, and application of Spinach molecular beacons triggered by strand displacement. Methods Enzymol (2015) 0.76
Characterization of Highly Efficient RNA-Cleaving DNAzymes that Function at Acidic pH with No Divalent Metal-Ion Cofactors. ChemistryOpen (2016) 0.75
The importance of mRNA structure in determining the pathogenicity of synonymous and non-synonymous mutations in haemophilia. Haemophilia (2016) 0.75
Laboratory evolution of artificially expanded DNA gives redesignable aptamers that target the toxic form of anthrax protective antigen. Nucleic Acids Res (2016) 0.75
Increased leukotoxin production: Characterization of 100 base pairs within the 530 base pair leukotoxin promoter region of Aggregatibacter actinomycetemcomitans. Sci Rep (2017) 0.75
Mechanistic insights into type I toxin antitoxin systems in Helicobacter pylori: the importance of mRNA folding in controlling toxin expression. Nucleic Acids Res (2017) 0.75
Competitive folding of RNA structures at a termination-antitermination site. RNA (2017) 0.75
Network Properties of the Ensemble of RNA Structures. PLoS One (2015) 0.75
The RNA Structure of cis-acting Translational Elements of the Chloroplast psbC mRNA in Chlamydomonas reinhardtii. Front Plant Sci (2016) 0.75
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Conditioning and Robustness of RNA Boltzmann Sampling under Thermodynamic Parameter Perturbations. Biophys J (2017) 0.75
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Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res (1981) 61.59
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Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme. Proc Natl Acad Sci U S A (2000) 2.26
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An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots. Bioinformatics (2004) 1.89
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CARNAC: folding families of related RNAs. Nucleic Acids Res (2004) 1.17
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The influence of a metastable structure in plasmid primer RNA on antisense RNA binding kinetics. Nucleic Acids Res (1995) 1.03
Dynamic competition between alternative structures in viroid RNAs simulated by an RNA folding algorithm. J Mol Biol (1998) 1.00
Metastable structures and refolding kinetics in hok mRNA of plasmid R1. RNA (1999) 0.98
ILM: a web server for predicting RNA secondary structures with pseudoknots. Nucleic Acids Res (2004) 0.96
Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations. Proc Natl Acad Sci U S A (2003) 1.73
Hierarchy and feedback in the evolution of the Escherichia coli transcription network. Proc Natl Acad Sci U S A (2007) 1.64
Probing complex RNA structures by mechanical force. Eur Phys J E Soft Matter (2003) 1.22
Encoding folding paths of RNA switches. Nucleic Acids Res (2006) 1.03
Assignment of phosphoglycerate mutase (PGAMA) to human chromosome 10. Regional mapping of GOT1 and PGAMA to subbands 10q26.1 (or q25.3). Ann Genet (1982) 1.01
Undulation instability of lipid membranes under an electric field. Phys Rev Lett (2002) 0.94
A comparative evolutionary study of transcription networks. The global role of feedback and hierachical structures. Mol Biosyst (2008) 0.79
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Logistic map analysis of biomolecular network evolution. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 0.75
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