Published in BMC Genomics on November 05, 2013
Genome-wide identification of Calcineurin B-Like (CBL) gene family of plants reveals novel conserved motifs and evolutionary aspects in calcium signaling events. BMC Plant Biol (2015) 0.84
Temperature expression patterns of genes and their coexpression with LncRNAs revealed by RNA-Seq in non-heading Chinese cabbage. BMC Genomics (2016) 0.82
Genome-Wide Identification of Calcium Dependent Protein Kinase Gene Family in Plant Lineage Shows Presence of Novel D-x-D and D-E-L Motifs in EF-Hand Domain. Front Plant Sci (2015) 0.80
Calcium imaging perspectives in plants. Int J Mol Sci (2014) 0.79
Extracellular Self-DNA (esDNA), but Not Heterologous Plant or Insect DNA (etDNA), Induces Plasma Membrane Depolarization and Calcium Signaling in Lima Bean (Phaseolus lunatus) and Maize (Zea mays). Int J Mol Sci (2016) 0.75
Genomics and evolutionary aspect of calcium signaling event in calmodulin and calmodulin-like proteins in plants. BMC Plant Biol (2017) 0.75
Mitogen Activated Protein Kinase (MPK) Interacts With Auxin Influx Carrier (OsAux/LAX1) Involved in Auxin Signaling in Plant. Biol Proced Online (2015) 0.75
Characterization and Comparison of the CPK Gene Family in the Apple (Malus × domestica) and Other Rosaceae Species and Its Response to Alternaria alternata Infection. PLoS One (2016) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods (2001) 414.27
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 220.97
Clustal W and Clustal X version 2.0. Bioinformatics (2007) 126.47
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol (2002) 82.19
The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics (2005) 34.83
Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res (2011) 11.32
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Res (2011) 8.18
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (2007) 8.12
The genome of the domesticated apple (Malus × domestica Borkh.). Nat Genet (2010) 8.07
Transgenic plant aequorin reports the effects of touch and cold-shock and elicitors on cytoplasmic calcium. Nature (1991) 6.73
An acylation cycle regulates localization and activity of palmitoylated Ras isoforms. Science (2005) 5.99
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS One (2007) 5.62
New and continuing developments at PROSITE. Nucleic Acids Res (2012) 4.41
Selective media for isolation of Agrobacterium, Corynebacterium, Erwinia, Pseudomonas, and Xanthomonas. Phytopathology (1970) 4.31
Communicating with calcium Plant Cell (1999) 3.96
The Arabidopsis CDPK-SnRK superfamily of protein kinases. Plant Physiol (2003) 3.96
CDPKs CPK6 and CPK3 function in ABA regulation of guard cell S-type anion- and Ca(2+)-permeable channels and stomatal closure. PLoS Biol (2006) 3.32
Calmodulins and calcineurin B-like proteins: calcium sensors for specific signal response coupling in plants. Plant Cell (2002) 3.15
Differential innate immune signalling via Ca(2+) sensor protein kinases. Nature (2010) 3.03
Calcium signaling through protein kinases. The Arabidopsis calcium-dependent protein kinase gene family. Plant Physiol (2002) 2.99
CSS-Palm 2.0: an updated software for palmitoylation sites prediction. Protein Eng Des Sel (2008) 2.86
Plants, symbiosis and parasites: a calcium signalling connection. Nat Rev Mol Cell Biol (2005) 2.43
Two calcium-dependent protein kinases, CPK4 and CPK11, regulate abscisic acid signal transduction in Arabidopsis. Plant Cell (2007) 2.40
The RPM1 plant disease resistance gene facilitates a rapid and sustained increase in cytosolic calcium that is necessary for the oxidative burst and hypersensitive cell death. Plant J (2000) 2.38
Genome-wide analyses of alternative splicing in plants: opportunities and challenges. Genome Res (2008) 2.30
Decoding Ca(2+) signals through plant protein kinases. Annu Rev Plant Biol (2004) 2.09
Multiple models for Rosaceae genomics. Plant Physiol (2008) 2.08
Death don't have no mercy and neither does calcium: Arabidopsis CYCLIC NUCLEOTIDE GATED CHANNEL2 and innate immunity. Plant Cell (2007) 1.95
Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes. Genetics (2002) 1.76
Effects of feeding Spodoptera littoralis on lima bean leaves. I. Membrane potentials, intracellular calcium variations, oral secretions, and regurgitate components. Plant Physiol (2004) 1.70
Genome-wide identification of the rice calcium-dependent protein kinase and its closely related kinase gene families: comprehensive analysis of the CDPKs gene family in rice. Plant Cell Physiol (2005) 1.45
Arabidopsis calcium-dependent protein kinase CPK10 functions in abscisic acid- and Ca2+-mediated stomatal regulation in response to drought stress. Plant Physiol (2010) 1.45
Pseudosubstrate inhibition of CDPK, a protein kinase with a calmodulin-like domain. Biochemistry (1994) 1.42
Effects of feeding Spodoptera littoralis on lima bean leaves. III. Membrane depolarization and involvement of hydrogen peroxide. Plant Physiol (2006) 1.32
Bifurcation of Arabidopsis NLR immune signaling via Ca²⁺-dependent protein kinases. PLoS Pathog (2013) 1.30
Innate immunity signaling: cytosolic Ca2+ elevation is linked to downstream nitric oxide generation through the action of calmodulin or a calmodulin-like protein. Plant Physiol (2008) 1.28
14-3-3 proteins activate a plant calcium-dependent protein kinase (CDPK). FEBS Lett (1998) 1.22
Evolutionary and functional study of the CDPK gene family in wheat (Triticum aestivum L.). Plant Mol Biol (2008) 1.20
Identification of a new motif for CDPK phosphorylation in vitro that suggests ACC synthase may be a CDPK substrate. Arch Biochem Biophys (2004) 1.18
CML42-mediated calcium signaling coordinates responses to Spodoptera herbivory and abiotic stresses in Arabidopsis. Plant Physiol (2012) 1.17
Alteration of substrate specificity: the variable N-terminal domain of tobacco Ca(2+)-dependent protein kinase is important for substrate recognition. Plant Cell (2010) 1.12
Modulation of defense responses of Malus spp. during compatible and incompatible interactions with Erwinia amylovora. Mol Plant Microbe Interact (2002) 1.10
Regulation of Arabidopsis defense responses against Spodoptera littoralis by CPK-mediated calcium signaling. BMC Plant Biol (2010) 1.10
The Arabidopsis Ca(2+) -dependent protein kinase CPK12 negatively regulates abscisic acid signaling in seed germination and post-germination growth. New Phytol (2011) 1.03
Exogenous polyamines elicit herbivore-induced volatiles in lima bean leaves: involvement of calcium, H2O2 and Jasmonic acid. Plant Cell Physiol (2009) 1.00
CDPK-mediated abiotic stress signaling. Plant Signal Behav (2012) 1.00
Cross-talk of calcium-dependent protein kinase and MAP kinase signaling. Plant Signal Behav (2011) 0.98
Genome-wide identification, classification, and expression analysis of CDPK and its closely related gene families in poplar (Populus trichocarpa). Mol Biol Rep (2012) 0.97
Fire blight: applied genomic insights of the pathogen and host. Annu Rev Phytopathol (2012) 0.96
Rootstock-regulated gene expression patterns associated with fire blight resistance in apple. BMC Genomics (2012) 0.94
Plasma membrane potential depolarization and cytosolic calcium flux are early events involved in tomato (Solanum lycopersicon) plant-to-plant communication. Plant Sci (2012) 0.93
The myristoylated amino-terminus of an Arabidopsis calcium-dependent protein kinase mediates plasma membrane localization. Plant Mol Biol (2013) 0.92
Calcium dependent protein kinase 1 and calcium fluxes in the malaria parasite. Microbes Infect (2012) 0.92
Splice variants: a homology modeling approach. Proteins (2004) 0.92
Calcium and secondary CPK signaling in plants in response to herbivore attack. Biochem Biophys Res Commun (2010) 0.91
Characterization of Arabidopsis calcium-dependent protein kinases: activated or not by calcium? Biochem J (2012) 0.91
Roles of Ca2+ and cyclic nucleotide gated channel in plant innate immunity. Plant Sci (2011) 0.90
Expression profiles of differentially regulated genes during the early stages of apple flower infection with Erwinia amylovora. J Exp Bot (2011) 0.89
Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus x domestica) with Erwinia amylovora. BMC Plant Biol (2010) 0.87
Maize calcium-dependent protein kinase (ZmCPK11): local and systemic response to wounding, regulation by touch and components of jasmonate signaling. Physiol Plant (2012) 0.87
Separation of early and late responses to herbivory in Arabidopsis by changing plasmodesmal function. Plant J (2012) 0.85
Putative resistance gene markers associated with quantitative trait loci for fire blight resistance in Malus 'Robusta 5' accessions. BMC Genet (2012) 0.84
Alternative splicing and the control of flowering time. Plant Cell (2002) 0.83
Nuclear dynamics of Arabidopsis calcium-dependent protein kinases in effector-triggered immunity. Plant Signal Behav (2013) 0.83
Genome-wide identification of the maize calcium-dependent protein kinase gene family. Appl Biochem Biotechnol (2013) 0.81
Probing Spatio-temporal Intracellular Calcium Variations in Plants. Methods Mol Biol (2009) 0.79
The genome of the domesticated apple (Malus × domestica Borkh.). Nat Genet (2010) 8.07
Silencing of aphid genes by dsRNA feeding from plants. PLoS One (2011) 1.79
A functional genomics approach identifies candidate effectors from the aphid species Myzus persicae (green peach aphid). PLoS Genet (2010) 1.73
Effects of feeding Spodoptera littoralis on lima bean leaves: IV. Diurnal and nocturnal damage differentially initiate plant volatile emission. Plant Physiol (2007) 1.33
A genome-wide phylogenetic reconstruction of family 1 UDP-glycosyltransferases revealed the expansion of the family during the adaptation of plants to life on land. Plant J (2011) 1.20
Over-expression of an FT-homologous gene of apple induces early flowering in annual and perennial plants. Planta (2010) 1.17
Regulation of Arabidopsis defense responses against Spodoptera littoralis by CPK-mediated calcium signaling. BMC Plant Biol (2010) 1.10
Ginkgo biloba responds to herbivory by activating early signaling and direct defenses. PLoS One (2012) 1.07
Supercritical fluid extraction of plant flavors and fragrances. Molecules (2013) 1.04
Robotic mechanical wounding (MecWorm) versus herbivore-induced responses: early signaling and volatile emission in Lima bean (Phaseolus lunatus L.). Planta (2010) 1.03
Identification of Pyrus single nucleotide polymorphisms (SNPs) and evaluation for genetic mapping in European pear and interspecific Pyrus hybrids. PLoS One (2013) 1.02
Exogenous polyamines elicit herbivore-induced volatiles in lima bean leaves: involvement of calcium, H2O2 and Jasmonic acid. Plant Cell Physiol (2009) 1.00
Fusarium oxysporum and its bacterial consortium promote lettuce growth and expansin A5 gene expression through microbial volatile organic compound (MVOC) emission. FEMS Microbiol Ecol (2011) 0.97
Recent advances in plant early signaling in response to herbivory. Int J Mol Sci (2011) 0.96
Plasma membrane potential depolarization and cytosolic calcium flux are early events involved in tomato (Solanum lycopersicon) plant-to-plant communication. Plant Sci (2012) 0.93
Identification of an EcoRI restriction site for a rapid and precise determination of beta-asarone-free Acorus calamus cytotypes. Phytochemistry (2005) 0.92
Calcium and secondary CPK signaling in plants in response to herbivore attack. Biochem Biophys Res Commun (2010) 0.91
Metabolic engineering of the C16 homoterpene TMTT in Lotus japonicus through overexpression of (E,E)-geranyllinalool synthase attracts generalist and specialist predators in different manners. New Phytol (2013) 0.90
Transcriptome pyrosequencing of the parasitoid wasp Cotesia vestalis: genes involved in the antennal odorant-sensory system. PLoS One (2012) 0.88
Response to biotic and oxidative stress in Arabidopsis thaliana: analysis of variably phosphorylated proteins. J Proteomics (2011) 0.88
Stable expression and phenotypic impact of attacin E transgene in orchard grown apple trees over a 12 year period. BMC Biotechnol (2010) 0.88
The microbial community of Vetiver root and its involvement into essential oil biogenesis. Environ Microbiol (2008) 0.87
Proteomic analysis of temperature stress-responsive proteins in Arabidopsis thaliana rosette leaves. Mol Biosyst (2013) 0.87
Chrysolina herbacea modulates terpenoid biosynthesis of Mentha aquatica L. PLoS One (2011) 0.86
Tailoring the structure of aminobisphosphonates to target plant P5C reductase. J Agric Food Chem (2008) 0.86
Biomolecular characterization of the levansucrase of Erwinia amylovora, a promising biocatalyst for the synthesis of fructooligosaccharides. J Agric Food Chem (2013) 0.84
Putative resistance gene markers associated with quantitative trait loci for fire blight resistance in Malus 'Robusta 5' accessions. BMC Genet (2012) 0.84
Engineering monoterpene production in yeast using a synthetic dominant negative geranyl diphosphate synthase. ACS Synth Biol (2014) 0.83
DNA internal standard for the quantitative determination of hallucinogenic plants in plant mixtures. Forensic Sci Int Genet (2007) 0.82
UV-B modulates the interplay between terpenoids and flavonoids in peppermint (Mentha x piperita L.). J Photochem Photobiol B (2010) 0.81
Dynamics of membrane potential variation and gene expression induced by Spodoptera littoralis, Myzus persicae, and Pseudomonas syringae in Arabidopsis. PLoS One (2012) 0.81
Two phenylalanine ammonia lyase isoforms are involved in the elicitor-induced response of rice to the fungal pathogen Magnaporthe oryzae. J Plant Physiol (2011) 0.81
Proteomic analysis of apricot fruit during ripening. J Proteomics (2012) 0.81
Is there room for improving the nutraceutical composition of apple? J Agric Food Chem (2015) 0.80
Tomato below ground-above ground interactions: Trichoderma longibrachiatum affects the performance of Macrosiphum euphorbiae and its natural antagonists. Mol Plant Microbe Interact (2013) 0.80
PCR and PCR-RFLP of the 5S-rRNA-NTS region and salvinorin A analyses for the rapid and unequivocal determination of Salvia divinorum. Phytochemistry (2006) 0.79
Probing Spatio-temporal Intracellular Calcium Variations in Plants. Methods Mol Biol (2009) 0.79
HS-SPME-GC×GC-qMS volatile metabolite profiling of Chrysolina herbacea frass and Mentha spp. leaves. Anal Bioanal Chem (2011) 0.79
Molecular and chemical mechanisms involved in aphid resistance in cultivated tomato. New Phytol (2010) 0.78
Polyamines and jasmonic acid induce plasma membrane potential variations in Lima bean. Plant Signal Behav (2010) 0.78
Effect of human flavin-containing monooxygenase 3 polymorphism on the metabolism of aurora kinase inhibitors. Int J Mol Sci (2013) 0.77
Genetically engineered Thompson Seedless grapevine plants designed for fungal tolerance: selection and characterization of the best performing individuals in a field trial. Transgenic Res (2014) 0.77
Comparative characterization of Santolina insularis chemotypes by essential oil composition, 5S-rRNA-NTS sequencing and EcoRV RFLP-PCR. Phytochemistry (2010) 0.76
Magnaporthe oryzae cell wall hydrolysate induces ROS and fungistatic VOCs in rice cell cultures. J Plant Physiol (2011) 0.75
Chlorophyll and its degradation products in the two-spotted spider mite, Tetranychus urticae: observations using epifluorescence and confocal laser scanning microscopy. Exp Appl Acarol (2013) 0.75
Antioxidant and radical scavenging activities of chamazulene. Nat Prod Res (2014) 0.75
Comparison of different extraction methods for the determination of α- and β-thujone in sage (Salvia officinalis L.) herbal tea. J Sep Sci (2013) 0.75