Practical guidelines for the comprehensive analysis of ChIP-seq data.

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Motif-based analysis of large nucleotide data sets using MEME-ChIP. Nat Protoc (2014) 1.15

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Impact of artifact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data. Front Genet (2014) 1.10

Plants Release Precursors of Histone Deacetylase Inhibitors to Suppress Growth of Competitors. Plant Cell (2015) 1.06

Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond. Cell Cycle (2014) 1.01

Understanding gene regulatory mechanisms by integrating ChIP-seq and RNA-seq data: statistical solutions to biological problems. Front Cell Dev Biol (2014) 0.86

Uncovering correlated variability in epigenomic datasets using the Karhunen-Loeve transform. BioData Min (2015) 0.85

Hematopoietic transcriptional mechanisms: from locus-specific to genome-wide vantage points. Exp Hematol (2014) 0.84

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Is this the right normalization? A diagnostic tool for ChIP-seq normalization. BMC Bioinformatics (2015) 0.81

Quantitative genomic analysis of RecA protein binding during DNA double-strand break repair reveals RecBCD action in vivo. Proc Natl Acad Sci U S A (2015) 0.81

Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes. PLoS Comput Biol (2015) 0.80

Identifying differential transcription factor binding in ChIP-seq. Front Genet (2015) 0.79

Argonaute 2 Binds Directly to tRNA Genes and Promotes Gene Repression in cis. Mol Cell Biol (2015) 0.79

DChIPRep, an R/Bioconductor package for differential enrichment analysis in chromatin studies. PeerJ (2016) 0.79

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Multiple Hepatic Regulatory Variants at the GALNT2 GWAS Locus Associated with High-Density Lipoprotein Cholesterol. Am J Hum Genet (2015) 0.77

Members of the Zinc Cluster Factor Family Alters Virulence in Candida albicans. Genetics (2016) 0.76

A review of three different studies on hidden markov models for epigenetic problems: a computational perspective. Genomics Inform (2014) 0.76

MicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps. BMC Bioinformatics (2016) 0.76

The major horse satellite DNA family is associated with centromere competence. Mol Cytogenet (2016) 0.76

Practical Guidelines for High-Resolution Epigenomic Profiling of Nucleosomal Histones in Postmortem Human Brain Tissue. Biol Psychiatry (2016) 0.76

NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing data. BMC Genomics (2017) 0.76

The ChIP-Seq tools and web server: a resource for analyzing ChIP-seq and other types of genomic data. BMC Genomics (2016) 0.75

Reusable, extensible, and modifiable R scripts and Kepler workflows for comprehensive single set ChIP-seq analysis. BMC Bioinformatics (2016) 0.75

CardioTF, a database of deconstructing transcriptional circuits in the heart system. PeerJ (2016) 0.75

Detecting and correcting the binding-affinity bias in ChIP-seq data using inter-species information. BMC Genomics (2016) 0.75

fluff: exploratory analysis and visualization of high-throughput sequencing data. PeerJ (2016) 0.75

Lethal lung hypoplasia and vascular defects in mice with conditional Foxf1 overexpression. Biol Open (2016) 0.75

MixChIP: a probabilistic method for cell type specific protein-DNA binding analysis. BMC Bioinformatics (2015) 0.75

Human Argonaute 2 Is Tethered to Ribosomal RNA through MicroRNA Interactions. J Biol Chem (2016) 0.75

An Entropy-Based Position Projection Algorithm for Motif Discovery. Biomed Res Int (2016) 0.75

Assessing quality standards for ChIP-seq and related massive parallel sequencing-generated datasets: When rating goes beyond avoiding the crisis. Genom Data (2014) 0.75

fCCAC: functional canonical correlation analysis to evaluate covariance between nucleic acid sequencing datasets. Bioinformatics (2017) 0.75

Broad-Enrich: functional interpretation of large sets of broad genomic regions. Bioinformatics (2014) 0.75

PAtCh-Cap: input strategy for improving analysis of ChIP-exo data sets and beyond. Nucleic Acids Res (2016) 0.75

How to make Mathematics Biology's next and better microscope. Biomol Detect Quantif (2014) 0.75

Iterative Fragmentation Improves the Detection of ChIP-seq Peaks for Inactive Histone Marks. Bioinform Biol Insights (2016) 0.75

Optimizing ChIP-seq peak detectors using visual labels and supervised machine learning. Bioinformatics (2016) 0.75

ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data. Bioinformatics (2016) 0.75

CisMapper: predicting regulatory interactions from transcription factor ChIP-seq data. Nucleic Acids Res (2017) 0.75

Chromatin immunoprecipitation and an open chromatin assay in zebrafish erythrocytes. Methods Cell Biol (2016) 0.75

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol (2009) 235.12

Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (2009) 190.94

The human genome browser at UCSC. Genome Res (2002) 168.23

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A (2005) 167.46

Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res (2008) 157.44

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc (2009) 137.99

Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods (2008) 126.81

High-resolution profiling of histone methylations in the human genome. Cell (2007) 85.74

SOAP: short oligonucleotide alignment program. Bioinformatics (2008) 68.13

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics (2009) 67.17

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature (2007) 65.18

Genome-wide mapping of in vivo protein-DNA interactions. Science (2007) 64.92

An integrated encyclopedia of DNA elements in the human genome. Nature (2012) 64.73

Differential expression analysis for sequence count data. Genome Biol (2010) 64.56

BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics (2010) 53.23

Model-based analysis of ChIP-Seq (MACS). Genome Biol (2008) 51.63

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nat Methods (2007) 45.04

Integrative genomics viewer. Nat Biotechnol (2011) 42.83

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol (2010) 39.63

Galaxy: a platform for interactive large-scale genome analysis. Genome Res (2005) 35.75

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat Biotechnol (2010) 18.44

Galaxy: a web-based genome analysis tool for experimentalists. Curr Protoc Mol Biol (2010) 17.00

The accessible chromatin landscape of the human genome. Nature (2012) 16.86

GREAT improves functional interpretation of cis-regulatory regions. Nat Biotechnol (2010) 16.72

Computation for ChIP-seq and RNA-seq studies. Nat Methods (2009) 16.11

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics (1999) 14.36

An integrated software system for analyzing ChIP-chip and ChIP-seq data. Nat Biotechnol (2008) 13.96

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. Genome Res (2006) 13.32

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. Nat Biotechnol (2009) 11.28

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets. Bioinformatics (2009) 10.30

Design and analysis of ChIP-seq experiments for DNA-binding proteins. Nat Biotechnol (2008) 10.10

Quantifying similarity between motifs. Genome Biol (2007) 9.27

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res (2012) 9.13

BigWig and BigBed: enabling browsing of large distributed datasets. Bioinformatics (2010) 9.11

FIMO: scanning for occurrences of a given motif. Bioinformatics (2011) 8.89

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. Nucleic Acids Res (2008) 8.89

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data. Bioinformatics (2009) 8.33

MEME-ChIP: motif analysis of large DNA datasets. Bioinformatics (2011) 6.52

Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution. Cell (2011) 6.29

Regulatory sequence analysis tools. Nucleic Acids Res (2003) 5.72

High-resolution DNA-binding specificity analysis of yeast transcription factors. Genome Res (2009) 5.11

STAMP: a web tool for exploring DNA-binding motif similarities. Nucleic Acids Res (2007) 4.92

Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks. BMC Bioinformatics (2008) 4.41

CEAS: cis-regulatory element annotation system. Bioinformatics (2009) 4.26

Cistrome: an integrative platform for transcriptional regulation studies. Genome Biol (2011) 4.13

Evaluation of algorithm performance in ChIP-seq peak detection. PLoS One (2010) 3.99

An assessment of histone-modification antibody quality. Nat Struct Mol Biol (2010) 3.72

Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors. Genome Biol (2012) 3.61

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data. BMC Bioinformatics (2010) 3.47

A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development. Dev Cell (2006) 3.29

The UCSC genome browser and associated tools. Brief Bioinform (2012) 3.29

ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing. Genome Biol (2010) 3.24

ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions. Nat Rev Genet (2012) 3.23

An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data. Bioinformatics (2008) 2.85

A signal-noise model for significance analysis of ChIP-seq with negative control. Bioinformatics (2010) 2.66

PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci. BMC Bioinformatics (2010) 2.65

RNA Pol II accumulates at promoters of growth genes during developmental arrest. Science (2009) 2.63

Systematic bias in high-throughput sequencing data and its correction by BEADS. Nucleic Acids Res (2011) 2.48

BayesPeak: Bayesian analysis of ChIP-seq data. BMC Bioinformatics (2009) 2.47

ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions. Genome Biol (2011) 2.47

Robust 4C-seq data analysis to screen for regulatory DNA interactions. Nat Methods (2012) 2.42

Inferring direct DNA binding from ChIP-seq. Nucleic Acids Res (2012) 2.41

HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data. BMC Bioinformatics (2010) 2.41

Is junk DNA bunk? A critique of ENCODE. Proc Natl Acad Sci U S A (2013) 2.37

Systematic evaluation of factors influencing ChIP-seq fidelity. Nat Methods (2012) 2.31

Identifying dispersed epigenomic domains from ChIP-Seq data. Bioinformatics (2011) 2.10

Comparative study on ChIP-seq data: normalization and binding pattern characterization. Bioinformatics (2009) 2.02

Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling. Bioinformatics (2011) 2.00

MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets. Genome Biol (2012) 1.88

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets. Nucleic Acids Res (2011) 1.79

High resolution genome wide binding event finding and motif discovery reveals transcription factor spatial binding constraints. PLoS Comput Biol (2012) 1.76

Whole-genome chromatin profiling from limited numbers of cells using nano-ChIP-seq. Nat Protoc (2011) 1.74

Predicting the molecular complexity of sequencing libraries. Nat Methods (2013) 1.63

Deep and wide digging for binding motifs in ChIP-Seq data. Bioinformatics (2010) 1.61

Inferring transcription factor complexes from ChIP-seq data. Nucleic Acids Res (2011) 1.53

Normalization, bias correction, and peak calling for ChIP-seq. Stat Appl Genet Mol Biol (2012) 1.47

Detecting differential binding of transcription factors with ChIP-seq. Bioinformatics (2011) 1.46

PeakRanger: a cloud-enabled peak caller for ChIP-seq data. BMC Bioinformatics (2011) 1.44

Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks. Proc Natl Acad Sci U S A (2013) 1.43

A computational pipeline for comparative ChIP-seq analyses. Nat Protoc (2011) 1.42

Discovering homotypic binding events at high spatial resolution. Bioinformatics (2010) 1.33

Studying the epigenome using next generation sequencing. J Med Genet (2011) 1.25

Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts. Brief Bioinform (2010) 1.17

CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments. Bioinformatics (2010) 1.11

DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models. Bioinformatics (2011) 1.10

ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions. Plant Methods (2011) 1.08

Normalization of ChIP-seq data with control. BMC Bioinformatics (2012) 1.06

CHANCE: comprehensive software for quality control and validation of ChIP-seq data. Genome Biol (2012) 1.03

An effective approach for identification of in vivo protein-DNA binding sites from paired-end ChIP-Seq data. BMC Bioinformatics (2010) 0.98

Chromatin modification by SUMO-1 stimulates the promoters of translation machinery genes. Nucleic Acids Res (2012) 0.98

Combining multiple ChIP-seq peak detection systems using combinatorial fusion. BMC Genomics (2012) 0.92

MULTOVL: fast multiple overlaps of genomic regions. Bioinformatics (2012) 0.92

RecMotif: a novel fast algorithm for weak motif discovery. BMC Bioinformatics (2010) 0.89

POLYPHEMUS: R package for comparative analysis of RNA polymerase II ChIP-seq profiles by non-linear normalization. Nucleic Acids Res (2011) 0.88

LOcating non-unique matched tags (LONUT) to improve the detection of the enriched regions for ChIP-seq data. PLoS One (2013) 0.87

Analyzing ChIP-seq data: preprocessing, normalization, differential identification, and binding pattern characterization. Methods Mol Biol (2012) 0.85

A fast weak motif-finding algorithm based on community detection in graphs. BMC Bioinformatics (2013) 0.82

Probabilistic peak calling and controlling false discovery rate estimations in transcription factor binding site mapping from ChIP-seq. Methods Mol Biol (2010) 0.81

Model-based analysis of ChIP-Seq (MACS). Genome Biol (2008) 51.63

A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci U S A (2004) 44.81

Sequencing of 50 human exomes reveals adaptation to high altitude. Science (2010) 11.27

Zoledronic acid and clinical fractures and mortality after hip fracture. N Engl J Med (2007) 9.83

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science (2010) 9.78

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res (2012) 9.13

TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Res (2006) 8.83

Hepatitis C virus glycoproteins mediate pH-dependent cell entry of pseudotyped retroviral particles. Proc Natl Acad Sci U S A (2003) 8.21

Differential chromatin marking of introns and expressed exons by H3K36me3. Nat Genet (2009) 8.11

PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification. Nucleic Acids Res (2003) 7.21

TreeFam: 2008 Update. Nucleic Acids Res (2007) 6.63

A circadian rhythm orchestrated by histone deacetylase 3 controls hepatic lipid metabolism. Science (2011) 5.91

Nuclear receptor-induced chromosomal proximity and DNA breaks underlie specific translocations in cancer. Cell (2009) 5.74

Analyses of pig genomes provide insight into porcine demography and evolution. Nature (2012) 5.58

Lanthanide-transition-metal sandwich framework comprising {Cu3} cluster pillars and layered networks of {Er36} wheels. Angew Chem Int Ed Engl (2005) 4.93

Unsupervised learning of an atlas from unlabeled point-sets. IEEE Trans Pattern Anal Mach Intell (2004) 4.63

Cross-leg flaps: our preferred alternative to free flaps in the treatment of complex traumatic lower extremity wounds. J Am Coll Surg (2013) 4.30

CEAS: cis-regulatory element annotation system. Bioinformatics (2009) 4.26

ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs. Cell (2011) 4.26

Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome. J Proteome Res (2005) 4.13

Opposing LSD1 complexes function in developmental gene activation and repression programmes. Nature (2007) 4.12

A randomized comparative effectiveness study of oral triple therapy versus etanercept plus methotrexate in early aggressive rheumatoid arthritis: the treatment of Early Aggressive Rheumatoid Arthritis Trial. Arthritis Rheum (2012) 4.01

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature (2012) 4.00

Genetic deficiency and pharmacological stabilization of mast cells reduce diet-induced obesity and diabetes in mice. Nat Med (2009) 3.97

Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation. Nature (2013) 3.93

EZH2 oncogenic activity in castration-resistant prostate cancer cells is Polycomb-independent. Science (2012) 3.74

Eya protein phosphatase activity regulates Six1-Dach-Eya transcriptional effects in mammalian organogenesis. Nature (2003) 3.72

Recognizing names in biomedical texts: a machine learning approach. Bioinformatics (2004) 3.70

Identifying ChIP-seq enrichment using MACS. Nat Protoc (2012) 3.60

Expression analysis of G Protein-Coupled Receptors in mouse macrophages. Immunome Res (2008) 3.54

Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars. Nat Genet (2013) 3.41

Structure-based prediction of protein-protein interactions on a genome-wide scale. Nature (2012) 3.37

Common variation near CDKN1A, POLD3 and SHROOM2 influences colorectal cancer risk. Nat Genet (2012) 3.19

The phosphothreonine lyase activity of a bacterial type III effector family. Science (2007) 3.18

Hepatitis C virus glycoproteins interact with DC-SIGN and DC-SIGNR. J Virol (2003) 3.10

Circadian and CLOCK-controlled regulation of the mouse transcriptome and cell proliferation. Proc Natl Acad Sci U S A (2007) 3.06

A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas. Mol Syst Biol (2008) 2.99

Dorsal root ganglion neurons innervating skeletal muscle respond to physiological combinations of protons, ATP, and lactate mediated by ASIC, P2X, and TRPV1. J Neurophysiol (2008) 2.99

Estrogen receptor (ER) mRNA and ER-related gene expression in breast cancers that are 1% to 10% ER-positive by immunohistochemistry. J Clin Oncol (2012) 2.98

Orchestration of floral initiation by APETALA1. Science (2010) 2.95

Moesin controls cortical rigidity, cell rounding, and spindle morphogenesis during mitosis. Curr Biol (2008) 2.92

Gait analysis using wearable sensors. Sensors (Basel) (2012) 2.90

Pseudomonas syringae effector AvrPto blocks innate immunity by targeting receptor kinases. Curr Biol (2007) 2.84

Porous lanthanide-organic open frameworks with helical tubes constructed from interweaving triple-helical and double-helical chains. Angew Chem Int Ed Engl (2005) 2.83

Palonosetron exhibits unique molecular interactions with the 5-HT3 receptor. Anesth Analg (2008) 2.79

Lynch syndrome (hereditary nonpolyposis colorectal cancer) diagnostics. J Natl Cancer Inst (2007) 2.77

Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks. Bioinformatics (2007) 2.63

Target genes of the MADS transcription factor SEPALLATA3: integration of developmental and hormonal pathways in the Arabidopsis flower. PLoS Biol (2009) 2.54

Protective effect of hydroxychloroquine on renal damage in patients with lupus nephritis: LXV, data from a multiethnic US cohort. Arthritis Rheum (2009) 2.50

Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach. Mol Cell Proteomics (2005) 2.50

Involvement of Lgl and Mahjong/VprBP in cell competition. PLoS Biol (2010) 2.45

Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells. Proteomics (2011) 2.44

Recognition of protein/gene names from text using an ensemble of classifiers. BMC Bioinformatics (2005) 2.42

Homeodomain-mediated beta-catenin-dependent switching events dictate cell-lineage determination. Cell (2006) 2.40

Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach. Mol Cell Proteomics (2014) 2.37

Kidney transplant rejection and tissue injury by gene profiling of biopsies and peripheral blood lymphocytes. Am J Transplant (2004) 2.35

The novel costimulatory programmed death ligand 1/B7.1 pathway is functional in inhibiting alloimmune responses in vivo. J Immunol (2011) 2.34

Gene set enrichment in eQTL data identifies novel annotations and pathway regulators. PLoS Genet (2008) 2.32

Systematic evaluation of factors influencing ChIP-seq fidelity. Nat Methods (2012) 2.31

Large-scale delineation of secreted protein biomarkers overexpressed in cancer tissue and serum. Proc Natl Acad Sci U S A (2003) 2.31

Association of EGFR mutation or ALK rearrangement with expression of DNA repair and synthesis genes in never-smoker women with pulmonary adenocarcinoma. Cancer (2012) 2.24

Meta-analysis added power to identify variants in FTO associated with type 2 diabetes and obesity in the Asian population. Obesity (Silver Spring) (2010) 2.15

Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications. Mol Cell Proteomics (2006) 2.14

Modulation of cardiac gap junction expression and arrhythmic susceptibility. Circ Res (2004) 2.11

Subcellular heterogeneity of sodium current properties in adult cardiac ventricular myocytes. Heart Rhythm (2011) 2.10

Accumulation of free ADP-ribose from mitochondria mediates oxidative stress-induced gating of TRPM2 cation channels. J Biol Chem (2004) 2.08

Enhanced detection of low abundance human plasma proteins using a tandem IgY12-SuperMix immunoaffinity separation strategy. Mol Cell Proteomics (2008) 2.08

Diverse CD81 proteins support hepatitis C virus infection. J Virol (2006) 2.07

Superfamily phenomena and motifs of networks induced from time series. Proc Natl Acad Sci U S A (2008) 2.06

Hematoma resolution as a target for intracerebral hemorrhage treatment: role for peroxisome proliferator-activated receptor gamma in microglia/macrophages. Ann Neurol (2007) 2.05

Effectiveness of a combination therapy using calcineurin inhibitor and mTOR inhibitor in preventing allograft rejection and post-transplantation renal cancer progression. Cancer Lett (2012) 2.05

The growth inhibitory effect of mesenchymal stem cells on tumor cells in vitro and in vivo. Cancer Biol Ther (2007) 2.05

Effect of thimerosal on the neurodevelopment of premature rats. World J Pediatr (2013) 2.04

Why did outbreaks of severe acute respiratory syndrome occur in some hospital wards but not in others? Clin Infect Dis (2007) 2.02

A series of luminescent lanthanide-cadmium-organic frameworks with helical channels and tubes. Chem Commun (Camb) (2006) 2.01

Head-to-head comparison of serum fractionation techniques. J Proteome Res (2007) 1.98

Jamming by shear. Nature (2011) 1.98

Utilizing human blood plasma for proteomic biomarker discovery. J Proteome Res (2005) 1.96

Age-related differences in unruptured intracranial aneurysms: 1-year outcomes. J Neurosurg (2014) 1.96

Flagellin induces innate immunity in nonhost interactions that is suppressed by Pseudomonas syringae effectors. Proc Natl Acad Sci U S A (2005) 1.94

A germanate framework containing 24-ring channels, Ni--Ge bonds, and chiral [Ni@Ge14O24(OH)3] cluster motifs transferred from chiral metal complexes. Angew Chem Int Ed Engl (2005) 1.94

High expression of ErbB family members and their ligands in lung adenocarcinomas that are sensitive to inhibition of epidermal growth factor receptor. Cancer Res (2005) 1.94

Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment. J Proteome Res (2006) 1.93

Trends in the use of biologic agents among rheumatoid arthritis patients enrolled in the US medicare program. Arthritis Care Res (Hoboken) (2013) 1.92

Exome sequencing reveals mutations in TRPV3 as a cause of Olmsted syndrome. Am J Hum Genet (2012) 1.91

Complete genome sequence of a highly prevalent isolate of porcine epidemic diarrhea virus in South China. J Virol (2012) 1.91

Changes in HIV prevalence and sexual behavior among men who have sex with men in a northern Chinese city: 2002-2006. J Infect (2007) 1.86

Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP). Nat Protoc (2010) 1.85

Metabolism and disposition of resveratrol in rats: extent of absorption, glucuronidation, and enterohepatic recirculation evidenced by a linked-rat model. J Pharmacol Exp Ther (2002) 1.82

Palonosetron triggers 5-HT(3) receptor internalization and causes prolonged inhibition of receptor function. Eur J Pharmacol (2009) 1.81

A 3D coordination framework based on linkages of nanosized hydroxo lanthanide clusters and copper centers by isonicotinate ligands. Angew Chem Int Ed Engl (2005) 1.78

Role of focal adhesion kinase in regulating YB-1-mediated paclitaxel resistance in ovarian cancer. J Natl Cancer Inst (2013) 1.78

Comparative RNAi screening identifies a conserved core metazoan actinome by phenotype. J Cell Biol (2011) 1.75

MicroRNA-9 inhibits ovarian cancer cell growth through regulation of NF-kappaB1. FEBS J (2009) 1.74

Complete genome sequence of a novel porcine epidemic diarrhea virus in south China. J Virol (2012) 1.73

Dual inhibition of canonical and noncanonical NF-κB pathways demonstrates significant antitumor activities in multiple myeloma. Clin Cancer Res (2012) 1.73

MIC-1 serum level and genotype: associations with progress and prognosis of colorectal carcinoma. Clin Cancer Res (2003) 1.71

Oral mucosal drug delivery: clinical pharmacokinetics and therapeutic applications. Clin Pharmacokinet (2002) 1.69