Comparative genomics of transport proteins in developmental bacteria: Myxococcus xanthus and Streptomyces coelicolor.

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Published in BMC Microbiol on December 05, 2013

Authors

Ilya Getsin, Gina H Nalbandian, Daniel C Yee, Ake Vastermark, Philipp C G Paparoditis, Vamsee S Reddy, Milton H Saier1

Author Affiliations

1: Department of Molecular Biology, University of California at San Diego, La Jolla, CA 92093-0116, USA. msaier@ucsd.edu.

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Carbonic anhydrases fused to anion transporters of the SulP family: evidence for a novel type of bicarbonate transporter. J Mol Microbiol Biotechnol (2004) 0.95

Phylogeny unites animal sodium leak channels with fungal calcium channels in an ancient, voltage-insensitive clade. Mol Biol Evol (2012) 0.94

An ABC transporter plays a developmental aggregation role in Myxococcus xanthus. J Bacteriol (1998) 0.93

Protein W, a spore-specific protein in Myxococcus xanthus, formation of a large electron-dense particle in a spore. Mol Microbiol (1998) 0.93

The asgE locus is required for cell-cell signalling during Myxococcus xanthus development. Mol Microbiol (2000) 0.93

Identification and localization of Myxococcus xanthus porins and lipoproteins. PLoS One (2011) 0.93

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Phylogenetic analyses of the ATP-binding constituents of bacterial extracytoplasmic receptor-dependent ABC-type nutrient uptake permeases. Res Microbiol (1995) 0.92

Genetic regulation of secondary metabolic pathways in Streptomyces. Ciba Found Symp (1992) 0.90

Formation and dispersion of mycelial pellets of Streptomyces coelicolor A3(2). J Microbiol (2004) 0.90