Published in Biochemistry on June 30, 2014
ISWI remodels nucleosomes through a random walk. Biochemistry (2014) 0.79
Touch, act and go: landing and operating on nucleosomes. EMBO J (2016) 0.76
Computational study of remodeling in a nucleosomal array. Eur Phys J E Soft Matter (2015) 0.75
Translating the histone code. Science (2001) 56.77
Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature (1997) 44.55
New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. J Mol Biol (1998) 10.73
The biology of chromatin remodeling complexes. Annu Rev Biochem (2009) 10.02
The structure of DNA in the nucleosome core. Nature (2003) 7.94
Preparation of nucleosome core particle from recombinant histones. Methods Enzymol (1999) 6.46
Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res (1995) 6.24
RSC, an essential, abundant chromatin-remodeling complex. Cell (1996) 6.17
ATP-dependent nucleosome remodeling. Annu Rev Biochem (2001) 5.59
Reconstitution of nucleosome core particles from recombinant histones and DNA. Methods Enzymol (2004) 4.57
Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae. Genes Dev (1999) 4.25
Eukaryotic transcription: an interlaced network of transcription factors and chromatin-modifying machines. Cell (1998) 3.92
Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer. Cell (1999) 3.87
Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences. J Mol Biol (1999) 3.72
The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing. Nat Struct Mol Biol (2006) 3.05
Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev (2002) 2.97
Mechanism of ATP-dependent translocation of E.coli UvrD monomers along single-stranded DNA. J Mol Biol (2004) 2.86
Chromatin remodeling through directional DNA translocation from an internal nucleosomal site. Nat Struct Mol Biol (2005) 2.81
ISWI is an ATP-dependent nucleosome remodeling factor. Mol Cell (1999) 2.68
Critical role for the histone H4 N terminus in nucleosome remodeling by ISWI. Mol Cell Biol (2001) 2.67
Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome. Nat Struct Mol Biol (2006) 2.62
Chromatin remodeling by ATP-dependent molecular machines. Bioessays (2003) 2.57
Modulation of ISWI function by site-specific histone acetylation. EMBO Rep (2002) 2.54
WSTF-ISWI chromatin remodeling complex targets heterochromatic replication foci. EMBO J (2002) 2.33
dMi-2 and ISWI chromatin remodelling factors have distinct nucleosome binding and mobilization properties. EMBO J (2000) 2.31
Uncoupling DNA translocation and helicase activity in PcrA: direct evidence for an active mechanism. EMBO J (2000) 2.27
Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI. Mol Cell (2003) 2.26
DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC. Mol Cell (2006) 2.25
A family of chromatin remodeling factors related to Williams syndrome transcription factor. Proc Natl Acad Sci U S A (2000) 2.24
Histone tails modulate nucleosome mobility and regulate ATP-dependent nucleosome sliding by NURF. Proc Natl Acad Sci U S A (2001) 2.13
Purification and characterization of a human factor that assembles and remodels chromatin. J Biol Chem (2000) 2.13
HuCHRAC, a human ISWI chromatin remodelling complex contains hACF1 and two novel histone-fold proteins. EMBO J (2000) 2.11
Perturbation of nucleosome core structure by the SWI/SNF complex persists after its detachment, enhancing subsequent transcription factor binding. Proc Natl Acad Sci U S A (1998) 2.09
Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling. EMBO J (2004) 2.08
Nucleosome mobilization and positioning by ISWI-containing chromatin-remodeling factors. J Cell Sci (2001) 2.00
Autoinhibition of Escherichia coli Rep monomer helicase activity by its 2B subdomain. Proc Natl Acad Sci U S A (2005) 1.95
A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI. Nucleic Acids Res (2002) 1.95
Evidence for DNA translocation by the ISWI chromatin-remodeling enzyme. Mol Cell Biol (2003) 1.93
Comparisons between the structures of HCV and Rep helicases reveal structural similarities between SF1 and SF2 super-families of helicases. Protein Sci (1998) 1.93
The chromodomains of the Chd1 chromatin remodeler regulate DNA access to the ATPase motor. Mol Cell (2010) 1.90
Direct observation of DNA distortion by the RSC complex. Mol Cell (2006) 1.89
Two actin-related proteins are shared functional components of the chromatin-remodeling complexes RSC and SWI/SNF. Mol Cell (1998) 1.88
Histone modifications influence the action of Snf2 family remodelling enzymes by different mechanisms. J Mol Biol (2007) 1.85
ISWI induces nucleosome sliding on nicked DNA. Mol Cell (2001) 1.78
Role of histone tails in nucleosome remodeling by Drosophila NURF. EMBO J (1997) 1.70
Dynamics of nucleosome remodelling by individual ACF complexes. Nature (2009) 1.68
Mechanisms for ATP-dependent chromatin remodelling. Curr Opin Genet Dev (2001) 1.65
The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes. Nature (2009) 1.64
Functional delineation of three groups of the ATP-dependent family of chromatin remodeling enzymes. J Biol Chem (2000) 1.61
ISWI remodeling complexes in Xenopus egg extracts: identification as major chromosomal components that are regulated by INCENP-aurora B. Mol Biol Cell (2002) 1.53
DNA-induced dimerization of the Escherichia coli rep helicase. Allosteric effects of single-stranded and duplex DNA. J Biol Chem (1992) 1.52
Functional differences between the human ATP-dependent nucleosome remodeling proteins BRG1 and SNF2H. J Biol Chem (2001) 1.51
Functional role of extranucleosomal DNA and the entry site of the nucleosome in chromatin remodeling by ISW2. Mol Cell Biol (2004) 1.45
Histone deacetylase inhibitor LAQ824 down-regulates Her-2 and sensitizes human breast cancer cells to trastuzumab, taxotere, gemcitabine, and epothilone B. Mol Cancer Ther (2003) 1.45
Mechanism of chromatin remodeling. Proc Natl Acad Sci U S A (2010) 1.42
Multiple Nhp6 molecules are required to recruit Spt16-Pob3 to form yFACT complexes and to reorganize nucleosomes. J Biol Chem (2003) 1.35
Defining the roles of individual residues in the single-stranded DNA binding site of PcrA helicase. Proc Natl Acad Sci U S A (2001) 1.35
Multiple ISWI ATPase complexes from xenopus laevis. Functional conservation of an ACF/CHRAC homolog. J Biol Chem (2000) 1.33
ATP binding modulates the nucleic acid affinity of hepatitis C virus helicase. J Biol Chem (2003) 1.33
Human ACF1 alters the remodeling strategy of SNF2h. J Biol Chem (2006) 1.33
Structural features of nucleosomes reorganized by yeast FACT and its HMG box component, Nhp6. Mol Cell Biol (2004) 1.32
Conformational changes associated with template commitment in ATP-dependent chromatin remodeling by ISW2. Mol Cell (2009) 1.29
Extranucleosomal DNA binding directs nucleosome sliding by Chd1. Mol Cell Biol (2011) 1.27
Reaction cycle of the yeast Isw2 chromatin remodeling complex. EMBO J (2004) 1.23
Mechanisms of ATP-dependent nucleosome sliding. Curr Opin Struct Biol (2010) 1.23
Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites. Proc Natl Acad Sci U S A (2010) 1.15
The ATPase domain of ISWI is an autonomous nucleosome remodeling machine. Nat Struct Mol Biol (2012) 1.13
The histone fold subunits of Drosophila CHRAC facilitate nucleosome sliding through dynamic DNA interactions. Mol Cell Biol (2005) 1.10
Identification of residues in chromodomain helicase DNA-binding protein 1 (Chd1) required for coupling ATP hydrolysis to nucleosome sliding. J Biol Chem (2011) 1.08
Kinetic model for the ATP-dependent translocation of Saccharomyces cerevisiae RSC along double-stranded DNA. Biochemistry (2007) 1.04
Nucleosome mobilization by ISW2 requires the concerted action of the ATPase and SLIDE domains. Nat Struct Mol Biol (2013) 1.03
The DNA binding properties of the Escherichia coli RecQ helicase. J Biol Chem (2003) 1.02
Heterochromatin protein Sir3 induces contacts between the amino terminus of histone H4 and nucleosomal DNA. Proc Natl Acad Sci U S A (2013) 1.02
Mechanisms for nucleosome movement by ATP-dependent chromatin remodeling complexes. Results Probl Cell Differ (2006) 1.00
Single-pair FRET experiments on nucleosome conformational dynamics. Biochimie (2010) 0.99
SnapShot: Chromatin remodeling: ISWI. Cell (2011) 0.98
The Dpb4 subunit of ISW2 is anchored to extranucleosomal DNA. J Biol Chem (2007) 0.97
The macroscopic rate of nucleic acid translocation by hepatitis C virus helicase NS3h is dependent on both sugar and base moieties. J Mol Biol (2010) 0.93
WSTF does it all: a multifunctional protein in transcription, repair, and replication. Biochem Cell Biol (2011) 0.92
Interactions of Escherichia coli primary replicative helicase DnaB protein with nucleotide cofactors. Biophys J (1996) 0.87
Fluorescence anisotropy assays for analysis of ISWI-DNA and ISWI-nucleosome interactions. Methods Enzymol (2004) 0.86
Mechanisms of interactions of the nucleotide cofactor with the RepA protein of plasmid RSF1010. Binding dynamics studied using the fluorescence stopped-flow method. Biochemistry (2009) 0.84
Allosteric interactions between the nucleotide-binding sites and the ssDNA-binding site in the PriA helicase-ssDNA complex. 3. Biochemistry (2006) 0.83
Allosteric interactions of DNA and nucleotides with S. cerevisiae RSC. Biochemistry (2011) 0.80
ISWI remodels nucleosomes through a random walk. Biochemistry (2014) 0.79
PPARgamma insufficiency enhances osteogenesis through osteoblast formation from bone marrow progenitors. J Clin Invest (2004) 5.29
Estrogen prevents bone loss via estrogen receptor alpha and induction of Fas ligand in osteoclasts. Cell (2007) 4.71
Crm1 is a mitotic effector of Ran-GTP in somatic cells. Nat Cell Biol (2005) 2.56
A Dimer of Escherichia coli UvrD is the active form of the helicase in vitro. J Mol Biol (2003) 2.26
Distinct contribution of IL-6, TNF-alpha, IL-1, and IL-10 to T cell-mediated spontaneous autoimmune arthritis in mice. J Clin Invest (2004) 2.16
Stem cell pathways contribute to clinical chemoresistance in ovarian cancer. Clin Cancer Res (2011) 2.03
A nonuniform stepping mechanism for E. coli UvrD monomer translocation along single-stranded DNA. Mol Cell (2007) 2.00
Autoinhibition of Escherichia coli Rep monomer helicase activity by its 2B subdomain. Proc Natl Acad Sci U S A (2005) 1.95
A prospective blinded evaluation of the accuracy of frozen section for the surgical management of endometrial cancer. Obstet Gynecol (2006) 1.77
Protein SUMOylation is massively increased in hibernation torpor and is critical for the cytoprotection provided by ischemic preconditioning and hypothermia in SHSY5Y cells. J Cereb Blood Flow Metab (2006) 1.75
General methods for analysis of sequential "n-step" kinetic mechanisms: application to single turnover kinetics of helicase-catalyzed DNA unwinding. Biophys J (2003) 1.70
SUSP1 antagonizes formation of highly SUMO2/3-conjugated species. J Cell Biol (2006) 1.67
Reduced pain hypersensitivity and inflammation in mice lacking microsomal prostaglandin e synthase-1. J Biol Chem (2004) 1.65
Akt1 in osteoblasts and osteoclasts controls bone remodeling. PLoS One (2007) 1.56
Involvement of endogenous bone morphogenetic protein (BMP) 2 and BMP6 in bone formation. J Biol Chem (2005) 1.47
Insulin receptor substrate-2 maintains predominance of anabolic function over catabolic function of osteoblasts. J Cell Biol (2002) 1.30
GSK-3beta controls osteogenesis through regulating Runx2 activity. PLoS One (2007) 1.29
PIASgamma is required for faithful chromosome segregation in human cells. PLoS One (2006) 1.21
Efficacy of telavancin (TD-6424), a rapidly bactericidal lipoglycopeptide with multiple mechanisms of action, in a murine model of pneumonia induced by methicillin-resistant Staphylococcus aureus. Antimicrob Agents Chemother (2005) 1.17
Interconceptional antibiotics to prevent spontaneous preterm birth: a randomized clinical trial. Am J Obstet Gynecol (2006) 1.16
Colocalization of P450c17 and cytochrome b5 in androgen-synthesizing tissues of the human. Biol Reprod (2004) 1.12
PIASy-dependent SUMOylation regulates DNA topoisomerase IIalpha activity. J Cell Biol (2010) 1.10
Ensemble methods for monitoring enzyme translocation along single stranded nucleic acids. Methods (2010) 1.07
Carminerin contributes to chondrocyte calcification during endochondral ossification. Nat Med (2006) 1.03
Structural studies of bacterioferritin B from Pseudomonas aeruginosa suggest a gating mechanism for iron uptake via the ferroxidase center . Biochemistry (2010) 1.00
Interaction between tumor suppressor adenomatous polyposis coli and topoisomerase IIalpha: implication for the G2/M transition. Mol Biol Cell (2008) 0.99
Investigation of translocation, DNA unwinding, and protein displacement by NS3h, the helicase domain from the hepatitis C virus helicase. Biochemistry (2010) 0.98
Novel association of APC with intermediate filaments identified using a new versatile APC antibody. BMC Cell Biol (2009) 0.97
PIASy mediates SUMO-2/3 conjugation of poly(ADP-ribose) polymerase 1 (PARP1) on mitotic chromosomes. J Biol Chem (2010) 0.95
SRC-1 is necessary for skeletal responses to sex hormones in both males and females. J Bone Miner Res (2004) 0.94
SUMOylation of the C-terminal domain of DNA topoisomerase IIα regulates the centromeric localization of Claspin. Cell Cycle (2015) 0.94
The macroscopic rate of nucleic acid translocation by hepatitis C virus helicase NS3h is dependent on both sugar and base moieties. J Mol Biol (2010) 0.93
Endoglin (CD105) contributes to platinum resistance and is a target for tumor-specific therapy in epithelial ovarian cancer. Clin Cancer Res (2012) 0.92
TRAF5 functions in both RANKL- and TNFalpha-induced osteoclastogenesis. J Bone Miner Res (2003) 0.92
Rod/Zw10 complex is required for PIASy-dependent centromeric SUMOylation. J Biol Chem (2010) 0.91
Endometrial microbial colonization and plasma cell endometritis after spontaneous or indicated preterm versus term delivery. Am J Obstet Gynecol (2005) 0.91
Molecular mechanism of the vitamin D antagonistic actions of (23S)-25-dehydro-1alpha-hydroxyvitamin D3-26,23-lactone depends on the primary structure of the carboxyl-terminal region of the vitamin d receptor. Mol Endocrinol (2005) 0.91
Single-stranded DNA translocation of E. coli UvrD monomer is tightly coupled to ATP hydrolysis. J Mol Biol (2012) 0.90
Positive effect of alendronate on subchondral bone healing and subsequent cartilage repair in a rabbit osteochondral defect model. Am J Sports Med (2009) 0.90
Identification and developmental expression of Xenopus laevis SUMO proteases. PLoS One (2009) 0.90
The Structure of the Hantavirus Zinc Finger Domain is Conserved and Represents the Only Natively Folded Region of the Gn Cytoplasmic Tail. Front Microbiol (2011) 0.87
Squamous cell carcinoma arising within a mature cystic teratoma with invasion into the adjacent small intestine: a case report. Int J Gynecol Pathol (2012) 0.86
Effect of niclosamide on basal-like breast cancers. Mol Cancer Ther (2014) 0.85
Effects of aging on cytochrome b5 expression in the human adrenal gland. J Clin Endocrinol Metab (2005) 0.84
Effects of timing of low-intensity pulsed ultrasound on distraction osteogenesis. J Orthop Res (2004) 0.83
Curative effect of combined treatment with alendronate and 1 alpha-hydroxyvitamin D3 on bone loss by ovariectomy in aged rats. Jpn J Pharmacol (2002) 0.82
Clinical trial of interconceptional antibiotics to prevent preterm birth: subgroup analyses and possible adverse antibiotic-microbial interaction. Am J Obstet Gynecol (2007) 0.82
Role of the tumor necrosis factor-alpha, cyclooxygenase-2, prostaglandin E2, and effect of low-intensity pulsed ultrasound in an in vitro herniated disc resorption model. J Orthop Res (2008) 0.82
Osteoclastogenesis-related antigen, a novel molecule on mouse stromal cells, regulates osteoclastogenesis. J Bone Miner Res (2003) 0.82
Impact of interconception antibiotics on the endometrial microbial flora. Am J Obstet Gynecol (2007) 0.82
Allosteric interactions of DNA and nucleotides with S. cerevisiae RSC. Biochemistry (2011) 0.80
Reducing heterophilic antibody interference in immunoassays using single-chain antibodies. Anal Biochem (2011) 0.79
ISWI remodels nucleosomes through a random walk. Biochemistry (2014) 0.79
The SUMO ligase PIAS1 regulates UV-induced apoptosis by recruiting Daxx to SUMOylated foci. J Cell Sci (2012) 0.79
Cloning, purification and comparative structural analysis of two hypothetical proteins from Mycobacterium tuberculosis found in the human granuloma during persistence and highly up-regulated under carbon-starvation conditions. Protein Expr Purif (2008) 0.78
Retracted CDP/cut is an osteoblastic coactivator of the vitamin D receptor (VDR). J Bone Miner Res (2010) 0.78
In vitro evaluation of low-intensity pulsed ultrasound in herniated disc resorption. Biomaterials (2005) 0.78
Developing recombinant antibodies for biomarker detection. Cancer Biomark (2010) 0.77
Primary extrarenal rhabdoid tumor of the ovary. A case report. J Reprod Med (2003) 0.76
Kinetic mechanism of DNA translocation by the RSC molecular motor. Arch Biochem Biophys (2013) 0.76
Stimulating parathyroid cell proliferation and PTH release with phosphate in organ cultures obtained from patients with primary and secondary hyperparathyroidism for a prolonged period. J Bone Miner Metab (2009) 0.76
All motors have to decide is what to do with the DNA that is given them. Biomol Concepts (2014) 0.76
Alendronate inhibits bone resorption at the bone-screw interface. Clin Orthop Relat Res (2005) 0.76
Alfacalcidol enhances collagen quality in ovariectomized rat bones. J Orthop Res (2014) 0.75
[Vitamin D and cancer]. Clin Calcium (2006) 0.75
TXNIP in Metabolic Regulation: Physiological Role and Therapeutic Outlook. Curr Drug Targets (2017) 0.75
Tolerance to the therapeutic effect of tadalafil does not occur during 6 months of treatment: A randomized, double-blind, placebo-controlled study in men with erectile dysfunction. J Sex Med (2006) 0.75
[Pharmacological and clinical profile of once weekly alendronate for the treatment of osteoporosis (Fosamac 35 mg/Bonalon 35 mg)]. Nihon Yakurigaku Zasshi (2007) 0.75