Published in J Immunol Res on December 29, 2016
Prediction of protein antigenic determinants from amino acid sequences. Proc Natl Acad Sci U S A (1981) 32.98
The atomic structure of protein-protein recognition sites. J Mol Biol (1999) 12.63
New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites. Biochemistry (1986) 5.12
Improved method for predicting linear B-cell epitopes. Immunome Res (2006) 4.32
Broadly neutralizing human antibody that recognizes the receptor-binding pocket of influenza virus hemagglutinin. Proc Natl Acad Sci U S A (2011) 3.51
Computational alanine scanning of protein-protein interfaces. Sci STKE (2004) 3.41
Epitopes on protein antigens: misconceptions and realities. Cell (1990) 3.32
Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins (2006) 3.15
Prediction of residues in discontinuous B-cell epitopes using protein 3D structures. Protein Sci (2006) 3.06
Benchmarking B cell epitope prediction: underperformance of existing methods. Protein Sci (2004) 2.70
Predicting linear B-cell epitopes using string kernels. J Mol Recognit (2008) 2.47
AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data. Immunome Res (2005) 2.40
Bcipep: a database of B-cell epitopes. BMC Genomics (2005) 2.27
ElliPro: a new structure-based tool for the prediction of antibody epitopes. BMC Bioinformatics (2008) 2.26
Location of 'continuous' antigenic determinants in the protruding regions of proteins. EMBO J (1986) 2.22
CEP: a conformational epitope prediction server. Nucleic Acids Res (2005) 2.14
Prediction of linear B-cell epitopes using amino acid pair antigenicity scale. Amino Acids (2007) 2.06
PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure. Bioinformatics (2008) 1.78
JenPep: a database of quantitative functional peptide data for immunology. Bioinformatics (2002) 1.75
Epitome: database of structure-inferred antigenic epitopes. Nucleic Acids Res (2006) 1.70
JenPep: a novel computational information resource for immunobiology and vaccinology. J Chem Inf Comput Sci (2003) 1.64
Mapping Epitope Structure and Activity: From One-Dimensional Prediction to Four-Dimensional Description of Antigenic Specificity Methods (1996) 1.63
SDAP: database and computational tools for allergenic proteins. Nucleic Acids Res (2003) 1.61
Computational characterization of B-cell epitopes. Mol Immunol (2007) 1.60
Epitope mapping: the first step in developing epitope-based vaccines. BioDrugs (2007) 1.58
Epitopia: a web-server for predicting B-cell epitopes. BMC Bioinformatics (2009) 1.55
Predicting location of continuous epitopes in proteins from their primary structures. Methods Enzymol (1991) 1.48
Epitope identification and discovery using phage display libraries: applications in vaccine development and diagnostics. Curr Drug Targets (2004) 1.47
Identification of conformational B-cell Epitopes in an antigen from its primary sequence. Immunome Res (2010) 1.45
Reliable B cell epitope predictions: impacts of method development and improved benchmarking. PLoS Comput Biol (2012) 1.44
SEPPA: a computational server for spatial epitope prediction of protein antigens. Nucleic Acids Res (2009) 1.42
MHCPEP: a database of MHC-binding peptides. Nucleic Acids Res (1994) 1.41
A machine-learning approach for predicting B-cell epitopes. Mol Immunol (2008) 1.40
CED: a conformational epitope database. BMC Immunol (2006) 1.39
Population of the HLA ligand database. Tissue Antigens (2003) 1.38
A proposal for the nomenclature of antigenic sites in peptides and proteins. Immunochemistry (1978) 1.38
The chemistry and mechanism of antibody binding to protein antigens. Adv Immunol (1988) 1.37
Improved method for linear B-cell epitope prediction using antigen's primary sequence. PLoS One (2013) 1.34
Prediction of three-dimensional structure and mapping of conformational epitopes of envelope glycoprotein of Japanese encephalitis virus. Virology (1999) 1.29
Epitope mapping using combinatorial phage-display libraries: a graph-based algorithm. Nucleic Acids Res (2006) 1.29
Structural analysis of B-cell epitopes in antibody:protein complexes. Mol Immunol (2012) 1.28
Epitope mapping by amide hydrogen/deuterium exchange coupled with immobilization of antibody, on-line proteolysis, liquid chromatography and mass spectrometry. Rapid Commun Mass Spectrom (2009) 1.27
Recent advances in B-cell epitope prediction methods. Immunome Res (2010) 1.26
Discontinuous epitope prediction based on mimotope analysis. Bioinformatics (2006) 1.22
EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results. BMC Bioinformatics (2010) 1.21
SVMTriP: a method to predict antigenic epitopes using support vector machine to integrate tri-peptide similarity and propensity. PLoS One (2012) 1.15
Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis. BMC Bioinformatics (2008) 1.15
The structural basis of antibody-antigen recognition. Front Immunol (2013) 1.14
EpitopeViewer: a Java application for the visualization and analysis of immune epitopes in the Immune Epitope Database and Analysis Resource (IEDB). Immunome Res (2007) 1.10
Bioinformatics resources and tools for phage display. Molecules (2011) 1.09
MIMOX: a web tool for phage display based epitope mapping. BMC Bioinformatics (2006) 1.09
Structure of adeno-associated virus-2 in complex with neutralizing monoclonal antibody A20. Virology (2012) 1.09
Immunoinformatics may lead to a reappraisal of the nature of B cell epitopes and of the feasibility of synthetic peptide vaccines. J Mol Recognit (2006) 1.07
FIMM, a database of functional molecular immunology: update 2002. Nucleic Acids Res (2002) 1.06
A simple reference state makes a significant improvement in near-native selections from structurally refined docking decoys. Proteins (2007) 1.05
Macromolecular NMR spectroscopy for the non-spectroscopist. FEBS J (2011) 1.04
Epitope discovery and their use in peptide based vaccines. Curr Pharm Des (2010) 1.04
A high-throughput shotgun mutagenesis approach to mapping B-cell antibody epitopes. Immunology (2014) 1.03
Recent developments and applications of saturation transfer difference nuclear magnetic resonance (STD NMR) spectroscopy. Mol Biosyst (2013) 1.00
BEST: improved prediction of B-cell epitopes from antigen sequences. PLoS One (2012) 0.99
Outer surface protein C peptide derived from Borrelia burgdorferi sensu stricto as a target for serodiagnosis of early lyme disease. Clin Vaccine Immunol (2013) 0.97
PEPOP: computational design of immunogenic peptides. BMC Bioinformatics (2008) 0.96
Mining for the antibody-antigen interacting associations that predict the B cell epitopes. BMC Struct Biol (2010) 0.95
Mapping of a surface-exposed, conformational epitope of the P6 protein of Haemophilus influenzae. Infect Immun (1995) 0.95
Antibody-specified B-cell epitope prediction in line with the principle of context-awareness. IEEE/ACM Trans Comput Biol Bioinform (2011) 0.93
A multiple kernel support vector machine scheme for feature selection and rule extraction from gene expression data of cancer tissue. Artif Intell Med (2007) 0.93
IEDB-3D: structural data within the immune epitope database. Nucleic Acids Res (2010) 0.93
Human antibodies that neutralize respiratory droplet transmissible H5N1 influenza viruses. J Clin Invest (2013) 0.92
Impact of immunization technology and assay application on antibody performance--a systematic comparative evaluation. PLoS One (2011) 0.91
Protein crystallography and fragment-based drug design. Future Med Chem (2013) 0.88
Use of amino acid composition to predict epitope residues of individual antibodies. Protein Eng Des Sel (2010) 0.88
Synthetic peptides as diagnostic tools in virology. Adv Virus Res (1993) 0.87
Potent dengue virus neutralization by a therapeutic antibody with low monovalent affinity requires bivalent engagement. PLoS Pathog (2014) 0.86
Rhipicephalus microplus lipocalins (LRMs): genomic identification and analysis of the bovine immune response using in silico predicted B and T cell epitopes. Int J Parasitol (2013) 0.85
FLAVIdB: A data mining system for knowledge discovery in flaviviruses with direct applications in immunology and vaccinology. Immunome Res (2011) 0.84
Crystal structure reveals conservation of amyloid-β conformation recognized by 3D6 following humanization to bapineuzumab. Alzheimers Res Ther (2014) 0.84
Improving B-cell epitope prediction and its application to global antibody-antigen docking. Bioinformatics (2014) 0.84
Mapping antigenic sites of an immunodominant surface lipoprotein of Mycoplasma agalactiae, AvgC, with the use of synthetic peptides. Infect Immun (2002) 0.84
Current approaches to fine mapping of antigen-antibody interactions. Immunology (2014) 0.82
Machine learning-based methods for prediction of linear B-cell epitopes. Methods Mol Biol (2014) 0.81
Multistructural hot spot characterization with FTProd. Bioinformatics (2012) 0.81
Using a combined computational-experimental approach to predict antibody-specific B cell epitopes. Structure (2014) 0.81
PepMapper: a collaborative web tool for mapping epitopes from affinity-selected peptides. PLoS One (2012) 0.81
B-cell epitopes of antigenic proteins in Leishmania infantum: an in silico analysis. Parasite Immunol (2014) 0.80
Epitope mapping of the neuronal growth inhibitor Nogo-A for the Nogo receptor and the cognate monoclonal antibody IN-1 by means of the SPOT technique. J Mol Recognit (2007) 0.79
LocaPep: localization of epitopes on protein surfaces using peptides from phage display libraries. J Chem Inf Model (2011) 0.79
Toxoplasma gondii: Vaccination with a DNA vaccine encoding T- and B-cell epitopes of SAG1, GRA2, GRA7 and ROP16 elicits protection against acute toxoplasmosis in mice. Vaccine (2015) 0.79
PEASE: predicting B-cell epitopes utilizing antibody sequence. Bioinformatics (2014) 0.78
Epitope mapping. Methods Mol Biol (2005) 0.77
EPMLR: sequence-based linear B-cell epitope prediction method using multiple linear regression. BMC Bioinformatics (2014) 0.77
Predicting linear B-cell epitopes using amino acid anchoring pair composition. BioData Min (2015) 0.76
Epitope mapping of monoclonal antibodies to the Escherichia coli F1 ATPase alpha subunit in relation to activity effects and location in the enzyme complex based on cryoelectron microscopy. Arch Biochem Biophys (1992) 0.76
Immunisation With Immunodominant Linear B Cell Epitopes Vaccine of Manganese Transport Protein C Confers Protection against Staphylococcus aureus Infection. PLoS One (2016) 0.76