Published in World J Virol on August 12, 2015
A diverse virome in kidney transplant patients contains multiple viral subtypes with distinct polymorphisms. Sci Rep (2016) 0.75
Viral Metagenomics on Blood-Feeding Arthropods as a Tool for Human Disease Surveillance. Int J Mol Sci (2016) 0.75
Genome Sequence of Dengue virus 3 from the Pythium insidiosum Transcriptomes. Front Microbiol (2016) 0.75
Comparison of error correction algorithms for Ion Torrent PGM data: application to hepatitis B virus. Sci Rep (2017) 0.75
The Human Virome - Implications for Clinical Practice in Transplantation Medicine. J Clin Microbiol (2017) 0.75
DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A (1977) 790.54
Basic local alignment search tool. J Mol Biol (1990) 659.07
Genome sequencing in microfabricated high-density picolitre reactors. Nature (2005) 150.21
Next-generation DNA sequencing methods. Annu Rev Genomics Hum Genet (2008) 68.81
Sequencing technologies - the next generation. Nat Rev Genet (2009) 40.57
Global trends in emerging infectious diseases. Nature (2008) 23.66
Tumour evolution inferred by single-cell sequencing. Nature (2011) 19.13
Accurate determination of microbial diversity from 454 pyrosequencing data. Nat Methods (2009) 15.25
The potential and challenges of nanopore sequencing. Nat Biotechnol (2008) 14.24
Identification of a new human coronavirus. Nat Med (2004) 11.24
GenBank. Nucleic Acids Res (2012) 10.89
Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev (2004) 10.67
A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics (2012) 9.97
Performance comparison of benchtop high-throughput sequencing platforms. Nat Biotechnol (2012) 8.99
Systematic artifacts in metagenomes from complex microbial communities. ISME J (2009) 8.18
A new arenavirus in a cluster of fatal transplant-associated diseases. N Engl J Med (2008) 7.73
Microarray-based detection and genotyping of viral pathogens. Proc Natl Acad Sci U S A (2002) 7.27
Sequence-specific error profile of Illumina sequencers. Nucleic Acids Res (2011) 6.88
Next-generation DNA sequencing techniques. N Biotechnol (2009) 6.02
Field guide to next-generation DNA sequencers. Mol Ecol Resour (2011) 5.93
Next-generation transcriptome assembly. Nat Rev Genet (2011) 5.89
Alta-Cyclic: a self-optimizing base caller for next-generation sequencing. Nat Methods (2008) 5.70
Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor. Cell (2012) 5.62
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biol (2010) 5.39
Bioinformatics challenges of new sequencing technology. Trends Genet (2008) 5.34
Genetic detection and characterization of Lujo virus, a new hemorrhagic fever-associated arenavirus from southern Africa. PLoS Pathog (2009) 4.88
A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species. Proc Natl Acad Sci U S A (2001) 4.62
Sense from sequence reads: methods for alignment and assembly. Nat Methods (2009) 4.44
Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J Virol (2009) 4.14
A window into third-generation sequencing. Hum Mol Genet (2010) 4.07
Metagenomics for studying unculturable microorganisms: cutting the Gordian knot. Genome Biol (2005) 3.96
TileQC: a system for tile-based quality control of Solexa data. BMC Bioinformatics (2008) 3.47
Laboratory procedures to generate viral metagenomes. Nat Protoc (2009) 3.20
Decoding long nanopore sequencing reads of natural DNA. Nat Biotechnol (2014) 2.77
Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach. PLoS One (2009) 2.67
Next-generation sequencing technologies for environmental DNA research. Mol Ecol (2012) 2.66
Strong signatures of selection in the domestic pig genome. Proc Natl Acad Sci U S A (2012) 2.59
A strategy to estimate unknown viral diversity in mammals. MBio (2013) 2.48
Viral metagenomics. Rev Med Virol (2007) 2.44
High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies. BMC Genomics (2008) 2.21
Validation of two ribosomal RNA removal methods for microbial metatranscriptomics. Nat Methods (2010) 2.21
Ultrasensitive detection of rare mutations using next-generation targeted resequencing. Nucleic Acids Res (2011) 2.11
Microbe hunting. Microbiol Mol Biol Rev (2010) 2.10
Next generation sequencing of viral RNA genomes. BMC Genomics (2013) 2.10
Sequence-independent, single-primer amplification (SISPA) of complex DNA populations. Mol Cell Probes (1991) 2.09
Application of next-generation sequencing technologies in virology. J Gen Virol (2012) 1.98
Detection of new viruses by VIDISCA. Virus discovery based on cDNA-amplified fragment length polymorphism. Methods Mol Biol (2008) 1.95
Metagenomics and the molecular identification of novel viruses. Vet J (2010) 1.75
Next generation sequencing technology: Advances and applications. Biochim Biophys Acta (2014) 1.72
Nucleic acid detection technologies -- labels, strategies, and formats. Clin Chem (1999) 1.71
Applications of next-generation sequencing technologies to diagnostic virology. Int J Mol Sci (2011) 1.64
Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples. J Clin Microbiol (2011) 1.64
CODEHOP-mediated PCR - a powerful technique for the identification and characterization of viral genomes. Virol J (2005) 1.62
Identification of a severe acute respiratory syndrome coronavirus-like virus in a leaf-nosed bat in Nigeria. MBio (2010) 1.62
Viral pathogen discovery. Curr Opin Microbiol (2013) 1.54
The sensitivity of massively parallel sequencing for detecting candidate infectious agents associated with human tissue. PLoS One (2011) 1.53
Next-generation sequencing technology in clinical virology. Clin Microbiol Infect (2013) 1.53
Virus identification in unknown tropical febrile illness cases using deep sequencing. PLoS Negl Trop Dis (2012) 1.52
Identification and nearly full-length genome characterization of novel porcine bocaviruses. PLoS One (2010) 1.51
Reference-free transcriptome assembly in non-model animals from next-generation sequencing data. Mol Ecol Resour (2012) 1.44
Emerging pathogens: challenges and successes of molecular diagnostics. J Mol Diagn (2008) 1.38
Next-generation sequencing: methodology and application. J Invest Dermatol (2013) 1.34
A sensitive assay for virus discovery in respiratory clinical samples. PLoS One (2011) 1.33
A viral discovery methodology for clinical biopsy samples utilising massively parallel next generation sequencing. PLoS One (2011) 1.32
Identification of a novel virus in pigs--Bungowannah virus: a possible new species of pestivirus. Virus Res (2007) 1.30
Human parechovirus type 1, 3, 4, 5, and 6 detection in picornavirus cultures. J Clin Microbiol (2007) 1.28
Next-generation sequencing and large genome assemblies. Pharmacogenomics (2012) 1.27
Evaluation of rapid and simple techniques for the enrichment of viruses prior to metagenomic virus discovery. J Virol Methods (2013) 1.21
Rapid nucleotide sequencing of DNA. Am J Hum Genet (1979) 1.19
Virome profiling of bats from Myanmar by metagenomic analysis of tissue samples reveals more novel Mammalian viruses. PLoS One (2013) 1.16
Metagenomic characterization of airborne viral DNA diversity in the near-surface atmosphere. J Virol (2012) 1.15
Metagenomic study of the viruses of African straw-coloured fruit bats: detection of a chiropteran poxvirus and isolation of a novel adenovirus. Virology (2013) 1.13
Reference-free validation of short read data. PLoS One (2010) 1.13
The application of genomics to emerging zoonotic viral diseases. PLoS Pathog (2009) 1.12
Methods in virus diagnostics: from ELISA to next generation sequencing. Virus Res (2013) 1.11
Viral agents as biological weapons and agents of bioterrorism. Am J Med Sci (2002) 1.10
Simultaneous rapid sequencing of multiple RNA virus genomes. J Virol Methods (2014) 1.09
Next-generation sequencing of cervical DNA detects human papillomavirus types not detected by commercial kits. Virol J (2012) 1.08
The human virome: new tools and concepts. Trends Microbiol (2013) 1.04
DNase SISPA-next generation sequencing confirms Schmallenberg virus in Belgian field samples and identifies genetic variation in Europe. PLoS One (2012) 1.04
Viral surveillance and discovery. Curr Opin Virol (2013) 1.03
Arbovirus detection in insect vectors by rapid, high-throughput pyrosequencing. PLoS Negl Trop Dis (2010) 1.02
Identification of a contemporary human parechovirus type 1 by VIDISCA and characterisation of its full genome. Virol J (2008) 1.01
Metagenomic sequencing for virus identification in a public-health setting. J Gen Virol (2010) 1.01
Protocol for metagenomic virus detection in clinical specimens. Emerg Infect Dis (2015) 0.99
Mechanisms of persistent infections by cytopathic viruses in tissue culture. Brief review. Arch Virol (1979) 0.97
Efficient depletion of host DNA contamination in malaria clinical sequencing. J Clin Microbiol (2012) 0.96
Using next generation sequencing to identify yellow fever virus in Uganda. Virology (2011) 0.93
New concepts and developments in applied diagnostic virology. Prog Med Virol (1974) 0.90
A method enabling high-throughput sequencing of human cytomegalovirus complete genomes from clinical isolates. PLoS One (2014) 0.89
Unraveling the web of viroinformatics: computational tools and databases in virus research. J Virol (2014) 0.88
Normalization of genomic DNA using duplex-specific nuclease. Biotechniques (2010) 0.87
Arthropods as a source of new RNA viruses. Microb Pathog (2014) 0.84
Cell culture techniques in the search for cancer viruses of man. In Vitro (1974) 0.81
Accuracy of Next Generation Sequencing Platforms. Next Gener Seq Appl (2015) 0.80
Sequence-independent VIDISCA-454 technique to discover new viruses in canine livers. J Virol Methods (2012) 0.80
A new method for sequencing DNA. 1977. Biotechnology (1992) 0.80
Identification and characterization of unrecognized viruses in stool samples of non-polio acute flaccid paralysis children by simplified VIDISCA. Virol J (2014) 0.77
Fruits of virus discovery: new pathogens and new experimental models. J Virol (2014) 0.76
Molecular characterization of viruses from clinical respiratory samples producing unidentified cytopathic effects in cell culture. Viruses (2009) 0.76