Published in Nat Genet on November 16, 2015
A supergene determines highly divergent male reproductive morphs in the ruff. Nat Genet (2015) 2.08
How to make a sex chromosome. Nat Commun (2016) 0.81
Making sense of genomic islands of differentiation in light of speciation. Nat Rev Genet (2016) 0.78
The pdm3 Locus Is a Hotspot for Recurrent Evolution of Female-Limited Color Dimorphism in Drosophila. Curr Biol (2016) 0.76
A diamond in the ruff. Nat Genet (2015) 0.75
Fitness consequences of polymorphic inversions in the zebra finch genome. Genome Biol (2016) 0.75
Brain Transcriptional Profiles of Male Alternative Reproductive Tactics and Females in Bluegill Sunfish. PLoS One (2016) 0.75
EVOLUTION. Avian supergenes. Science (2016) 0.75
Complex traits: A diamond in the ruff. Nat Rev Genet (2015) 0.75
Linkage mapping of a polymorphic plumage locus associated with intermorph incompatibility in the Gouldian finch (Erythrura gouldiae). Heredity (Edinb) (2016) 0.75
A flamboyant behavioral polymorphism is controlled by a lethal supergene. Nat Genet (2015) 0.75
Born blonde: a recessive loss-of-function mutation in the melanocortin 1 receptor is associated with cream coat coloration in Antarctic fur seals. Ecol Evol (2016) 0.75
Evolution of recombination rates between sex chromosomes. Philos Trans R Soc Lond B Biol Sci (2017) 0.75
Dissecting evolution and disease using comparative vertebrate genomics. Nat Rev Genet (2017) 0.75
Significant Synteny and Co-localization of Ecologically Relevant Quantitative Trait Loci Within and Across Species of Salmonid Fishes. Genetics (2017) 0.75
PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet (2007) 209.92
Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (2009) 190.94
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res (2010) 97.51
A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet (2011) 59.36
Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol (2011) 53.86
Integrative genomics viewer. Nat Biotechnol (2011) 42.83
BLAST+: architecture and applications. BMC Bioinformatics (2009) 36.53
The variant call format and VCFtools. Bioinformatics (2011) 25.88
Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am J Hum Genet (2007) 24.68
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience (2012) 20.89
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly (Austin) (2012) 20.08
BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat Methods (2009) 18.41
From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline. Curr Protoc Bioinformatics (2013) 8.79
InterProScan 5: genome-scale protein function classification. Bioinformatics (2014) 8.52
The human CENP-A centromeric nucleosome-associated complex. Nat Cell Biol (2006) 6.85
MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Res (2007) 6.48
Identification of 315 genes essential for early zebrafish development. Proc Natl Acad Sci U S A (2004) 5.54
AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Res (2004) 5.53
Comparative genomics reveals insights into avian genome evolution and adaptation. Science (2014) 3.01
Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry. Nature (2011) 2.65
doublesex is a mimicry supergene. Nature (2014) 2.34
A Y-like social chromosome causes alternative colony organization in fire ants. Nature (2013) 2.13
A window on the genetics of evolution: MC1R and plumage colouration in birds. Proc Biol Sci (2005) 2.11
A supergene determines highly divergent male reproductive morphs in the ruff. Nat Genet (2015) 2.08
A genetic mechanism for female-limited Batesian mimicry in Papilio butterfly. Nat Genet (2015) 1.94
Web Apollo: a web-based genomic annotation editing platform. Genome Biol (2013) 1.69
Alternative reproductive strategies in the ruff, Philomachus pugnax: a mixed ESS? Anim Behav (1998) 1.60
Permanent female mimics in a lekking shorebird. Biol Lett (2006) 1.34
The chromosomal polymorphism linked to variation in social behavior in the white-throated sparrow (Zonotrichia albicollis) is a complex rearrangement and suppressor of recombination. Genetics (2008) 1.32
Supergenes and complex phenotypes. Curr Biol (2014) 1.14
The diversity of sex steroid action: novel functions of hydroxysteroid (17β) dehydrogenases as revealed by genetically modified mouse models. J Endocrinol (2011) 1.13
The Rose-comb mutation in chickens constitutes a structural rearrangement causing both altered comb morphology and defective sperm motility. PLoS Genet (2012) 1.12
The genetic basis of the plumage polymorphism in red-footed boobies (Sula sula): a melanocortin-1 receptor (MC1R) analysis. J Hered (2007) 1.07
A dominant allele controls development into female mimic male and diminutive female ruffs. Biol Lett (2013) 1.01
Estrogen receptor α polymorphism in a species with alternative behavioral phenotypes. Proc Natl Acad Sci U S A (2014) 0.99
New insights into the hormonal and behavioural correlates of polymorphism in white-throated sparrows, Zonotrichia albicollis. Anim Behav (2014) 0.85
Assessment of the ability of type 2 cytochrome b5 to modulate 17,20-lyase activity of human P450c17. J Steroid Biochem Mol Biol (2002) 0.83
Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor. Cell (2012) 5.62
The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment. Nat Med (2015) 3.01
An integrated catalog of reference genes in the human gut microbiome. Nat Biotechnol (2014) 2.62
Genome sequence of the cultivated cotton Gossypium arboreum. Nat Genet (2014) 2.61
Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution. Nat Biotechnol (2015) 2.29
The genome sequence of the orchid Phalaenopsis equestris. Nat Genet (2014) 1.83
The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nat Genet (2016) 1.52
OTG-snpcaller: an optimized pipeline based on TMAP and GATK for SNP calling from ion torrent data. PLoS One (2014) 1.44
Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer. Gut (2015) 0.99
De novo assembly of a haplotype-resolved human genome. Nat Biotechnol (2015) 0.98
Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nat Biotechnol (2017) 0.96
Novel loci and pathways significantly associated with longevity. Sci Rep (2016) 0.89
The expanding spectrum of PRPS1-associated phenotypes: three novel mutations segregating with X-linked hearing loss and mild peripheral neuropathy. Eur J Hum Genet (2014) 0.86
cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs. Clin Epigenetics (2016) 0.85
Haplotype-based approach for noninvasive prenatal diagnosis of congenital adrenal hyperplasia by maternal plasma DNA sequencing. Gene (2014) 0.84
Using SOAPaligner for Short Reads Alignment. Curr Protoc Bioinformatics (2013) 0.83
A simple repeat polymorphism in the MITF-M promoter is a key regulator of white spotting in dogs. PLoS One (2014) 0.83
The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing. Elife (2016) 0.83
Regulatory mutations in TBX3 disrupt asymmetric hair pigmentation that underlies Dun camouflage color in horses. Nat Genet (2015) 0.82
Genome-Wide Analysis Identifies Germ-Line Risk Factors Associated with Canine Mammary Tumours. PLoS Genet (2016) 0.81
Deep sequencing of the MHC region in the Chinese population contributes to studies of complex disease. Nat Genet (2016) 0.79
Discovery of a natural product-like iNOS inhibitor by molecular docking with potential neuroprotective effects in vivo. PLoS One (2014) 0.76
Whole-genome duplication and molecular evolution in Cornus L. (Cornaceae) - Insights from transcriptome sequences. PLoS One (2017) 0.75
The evolution of Sex-linked barring alleles in chickens involves both regulatory and coding changes in CDKN2A. PLoS Genet (2017) 0.75
Retinoic acid combined with spermatogonial stem cell conditions facilitate the generation of mouse germ-like cells. Biosci Rep (2017) 0.75
Stromal Gene Expression is Predictive for Metastatic Primary Prostate Cancer. Eur Urol (2017) 0.75
Evaluation in zebrafish model of the toxicity of rhodamine B-conjugated crotamine, a peptide potentially useful for diagnostics and therapeutics. J Biochem Mol Toxicol (2017) 0.75
Moderate nucleotide diversity in the Atlantic herring is associated with a low mutation rate. Elife (2017) 0.75
Phylogeography and larval spine length of the dragonfly Leucorhinia dubia in Europe. PLoS One (2017) 0.75
The Different T-cell Receptor Repertoires in Breast Cancer Tumors, Draining Lymph Nodes, and Adjacent Tissues. Cancer Immunol Res (2016) 0.75