Published in J Chem Theory Comput on September 09, 2016
VMD: visual molecular dynamics. J Mol Graph (1996) 117.02
NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR (1995) 93.94
Scalable molecular dynamics with NAMD. J Comput Chem (2005) 59.49
All-atom empirical potential for molecular modeling and dynamics studies of proteins. J Phys Chem B (1998) 54.00
The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics (2005) 34.83
Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J Biomol NMR (1999) 26.99
SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Res (2003) 25.86
Pfam: the protein families database. Nucleic Acids Res (2013) 22.48
Knowledge-based protein secondary structure assignment. Proteins (1995) 14.08
Feedback inhibition of macrophage tumor necrosis factor-alpha production by tristetraprolin. Science (1998) 8.55
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell (2001) 7.79
Evidence that tristetraprolin binds to AU-rich elements and promotes the deadenylation and destabilization of tumor necrosis factor alpha mRNA. Mol Cell Biol (1999) 5.55
Protein structure homology modeling using SWISS-MODEL workspace. Nat Protoc (2009) 5.42
Tristetraprolin and other CCCH tandem zinc-finger proteins in the regulation of mRNA turnover. Biochem Soc Trans (2002) 4.02
Interactions of CCCH zinc finger proteins with mRNA. Binding of tristetraprolin-related zinc finger proteins to Au-rich elements and destabilization of mRNA. J Biol Chem (2000) 3.50
Recognition of the mRNA AU-rich element by the zinc finger domain of TIS11d. Nat Struct Mol Biol (2004) 3.39
Tristetraprolin down-regulates IL-2 gene expression through AU-rich element-mediated mRNA decay. J Immunol (2005) 2.24
Interactions of CCCH zinc finger proteins with mRNA: non-binding tristetraprolin mutants exert an inhibitory effect on degradation of AU-rich element-containing mRNAs. J Biol Chem (2002) 2.17
The tandem CCCH zinc finger protein tristetraprolin and its relevance to cytokine mRNA turnover and arthritis. Arthritis Res Ther (2004) 2.05
Intrahelical hydrogen bonding of serine, threonine and cysteine residues within alpha-helices and its relevance to membrane-bound proteins. J Mol Biol (1984) 2.00
Determination of secondary structure populations in disordered states of proteins using nuclear magnetic resonance chemical shifts. Biochemistry (2012) 1.87
Characteristics of the interaction of a synthetic human tristetraprolin tandem zinc finger peptide with AU-rich element-containing RNA substrates. J Biol Chem (2003) 1.67
Serine and threonine residues bend alpha-helices in the chi(1) = g(-) conformation. Biophys J (2000) 1.57
Zn protein simulations including charge transfer and local polarization effects. J Am Chem Soc (2005) 1.17
Substrate dependence of conformational changes in the RNA-binding domain of tristetraprolin assessed by fluorescence spectroscopy of tryptophan mutants. Biochemistry (2006) 0.89
A computational study of RNA binding and specificity in the tandem zinc finger domain of TIS11d. Protein Sci (2010) 0.85
Probing the structural and dynamical effects of the charged residues of the TZF domain of TIS11d. Biophys J (2015) 0.80
Three Residues Make an Evolutionary Switch for Folding and RNA-Destabilizing Activity in the TTP Family of Proteins. ACS Chem Biol (2015) 0.78