Binding of Escherichia coli ribosomal protein S8 to 16 S rRNA. A model for the interaction and the tertiary structure of the RNA binding site.

PubWeight™: 1.47‹?› | Rank: Top 5%

🔗 View Article (PMID 3323531)

Published in J Mol Biol on November 05, 1987

Authors

M Mougel1, F Eyermann, E Westhof, P Romby, A Expert-Bezançon, J P Ebel, B Ehresmann, C Ehresmann

Author Affiliations

1: Laboratoire de Biochimie, Institut de Biologie Moléculaire et Cellulaire du CNRS, Strasbourg, France.

Articles citing this

Dimerization of human immunodeficiency virus (type 1) RNA: stimulation by cations and possible mechanism. Nucleic Acids Res (1991) 2.94

Unusual branch point selection in processing of human growth hormone pre-mRNA. Mol Cell Biol (1988) 2.12

Ribosomal RNA is the target for oxazolidinones, a novel class of translational inhibitors. RNA (1999) 1.32

Sharing and archiving nucleic acid structure mapping data. RNA (2011) 1.20

Messenger RNA structure and gene regulation at the translational level in Escherichia coli: the case of threonine:tRNAThr ligase. Proc Natl Acad Sci U S A (1988) 1.19

Conformation and structural fluctuations of a 218 nucleotides long rRNA fragment: 4-thiouridine as an intrinsic photolabelling probe. Nucleic Acids Res (1991) 1.19

Cloning and analysis of the spc ribosomal protein operon of Bacillus subtilis: comparison with the spc operon of Escherichia coli. Nucleic Acids Res (1989) 1.13

Neuronal BC1 RNA structure: evolutionary conversion of a tRNA(Ala) domain into an extended stem-loop structure. RNA (2001) 1.13

The binding site for ribosomal protein S8 in 16S rRNA and spc mRNA from Escherichia coli: minimum structural requirements and the effects of single bulged bases on S8-RNA interaction. Nucleic Acids Res (1994) 1.06

The E. coli 16S rRNA binding site of ribosomal protein S15: higher-order structure in the absence and in the presence of the protein. Nucleic Acids Res (1988) 1.01

A comparison of the solution structures and conformational properties of the somatic and oocyte 5S rRNAs of Xenopus laevis. Nucleic Acids Res (1988) 1.00

Structural features of the binding site for ribosomal protein S8 in Escherichia coli 16S rRNA defined using NMR spectroscopy. Proc Natl Acad Sci U S A (1997) 0.96

Solution conformation of several free tRNALeu species from bean, yeast and Escherichia coli and interaction of these tRNAs with bean cytoplasmic Leucyl-tRNA synthetase. A phosphate alkylation study with ethylnitrosourea. Nucleic Acids Res (1990) 0.96

Role of conserved nucleotides in building the 16S rRNA binding site of E. coli ribosomal protein S8. Nucleic Acids Res (1994) 0.96

Mutagenesis of ribosomal protein S8 from Escherichia coli: defects in regulation of the spc operon. J Bacteriol (1992) 0.93

Protein binding sites on Escherichia coli 16S ribosomal RNA; RNA regions that are protected by proteins S7, S9 and S19, and by proteins S8, S15 and S17. Nucleic Acids Res (1988) 0.90

The location of protein S8 and surrounding elements of 16S rRNA in the 70S ribosome from combined use of directed hydroxyl radical probing and X-ray crystallography. RNA (2000) 0.90

Temperature-dependent RNP conformational rearrangements: analysis of binary complexes of primary binding proteins with 16 S rRNA. J Mol Biol (2007) 0.88

In vivo selection of functional ribosomes with variations in the rRNA-binding site of Escherichia coli ribosomal protein S8: evolutionary implications. Proc Natl Acad Sci U S A (2000) 0.85

A difference in the importance of bulged nucleotides and their parent base pairs in the binding of transcription factor IIIA to Xenopus 5S RNA and 5S RNA genes. Nucleic Acids Res (1989) 0.84

Regulation of ribosomal protein synthesis in Vibrio cholerae. J Bacteriol (2004) 0.83

The effects of disrupting 5S RNA helical structures on the binding of Xenopus transcription factor IIIA. Nucleic Acids Res (1990) 0.82

Conformity of RNAs that interact with tetranucleotide loop binding proteins. Nucleic Acids Res (1992) 0.81

Molecular mimicry in translational control of E. coli threonyl-tRNA synthetase gene. Competitive inhibition in tRNA aminoacylation and operator-repressor recognition switch using tRNA identity rules. Nucleic Acids Res (1992) 0.78

The structure of Aquifex aeolicus ribosomal protein S8 reveals a unique subdomain that contributes to an extremely tight association with 16S rRNA. J Mol Biol (2011) 0.76

Articles by these authors

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol (1990) 10.85

Geometric nomenclature and classification of RNA base pairs. RNA (2001) 9.08

Probing the structure of RNAs in solution. Nucleic Acids Res (1987) 7.62

Crystallographic refinement of yeast aspartic acid transfer RNA. J Mol Biol (1985) 6.33

The complete nucleotide sequence of the ribosomal 16-S RNA from Excherichia coli. Experimental details and cistron heterogeneities. Eur J Biochem (1979) 6.08

U2 RNA shares a structural domain with U1, U4, and U5 RNAs. EMBO J (1982) 4.68

Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs. Nucleic Acids Res (1981) 4.53

A standard reference frame for the description of nucleic acid base-pair geometry. J Mol Biol (2001) 4.29

The topography of the 5' end of 16-S RNA in the presence and absence of ribosomal proteins S4 and S20. Eur J Biochem (1980) 4.22

The primary and secondary structure of yeast 26S rRNA. Nucleic Acids Res (1981) 4.10

Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains. J Mol Biol (1993) 4.08

Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro. Proc Natl Acad Sci U S A (1994) 4.07

Hierarchy and dynamics of RNA folding. Annu Rev Biophys Biomol Struct (1997) 3.95

Evidence for tertiary structural RNA-RNA interactions within the protein S4 binding site at the 5'-end of 16S ribosomal RNA of Escherichia coli.+. Nucleic Acids Res (1975) 3.67

Correlation between segmental mobility and the location of antigenic determinants in proteins. Nature (1984) 3.66

Visualizing the logic behind RNA self-assembly. Science (1996) 3.62

The sequence of the ribosomal 16S RNA from Proteus vulgaris. Sequence comparison with E. coli 16S RNA and its use in secondary model building. Nucleic Acids Res (1981) 3.43

The fragile X mental retardation protein binds specifically to its mRNA via a purine quartet motif. EMBO J (2001) 3.42

A topographical study of the 5'-region of 16 S rna of Escherichia coli in the presence and absence of protein S4. FEBS Lett (1977) 3.31

Initiation of reverse transcription of HIV-1: secondary structure of the HIV-1 RNA/tRNA(3Lys) (template/primer). J Mol Biol (1995) 3.23

The sequence of Escherichia coli ribosomal 16 S RNA determined by new rapid gel methods. FEBS Lett (1978) 3.19

Nucleotide sequences of nuclear U1A RNAs from chicken, rat and man. Nucleic Acids Res (1980) 3.13

A common motif organizes the structure of multi-helix loops in 16 S and 23 S ribosomal RNAs. J Mol Biol (1998) 3.02

A common octamer motif binding protein is involved in the transcription of U6 snRNA by RNA polymerase III and U2 snRNA by RNA polymerase II. Cell (1987) 2.99

Zinc ion mediated amino acid discrimination by threonyl-tRNA synthetase. Nat Struct Biol (2000) 2.97

Modified nucleotides of tRNA(3Lys) modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription. J Biol Chem (1993) 2.95

Dimerization of human immunodeficiency virus (type 1) RNA: stimulation by cations and possible mechanism. Nucleic Acids Res (1991) 2.94

The 5S rRNA loop E: chemical probing and phylogenetic data versus crystal structure. RNA (1998) 2.94

A novel RNA structural motif in the selenocysteine insertion element of eukaryotic selenoprotein mRNAs. RNA (1996) 2.85

Measurements of energetic particle radiation in transit to Mars on the Mars Science Laboratory. Science (2013) 2.83

New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme. Chem Biol (1996) 2.81

The structure of threonyl-tRNA synthetase-tRNA(Thr) complex enlightens its repressor activity and reveals an essential zinc ion in the active site. Cell (1999) 2.74

The determination of the primary structure of the 16S ribosomal RNA of Escherichia coli. 2. Nucleotide sequences of products from partial enzymatic hydrolysis. Biochimie (1972) 2.74

Mutational analysis of the bipartite dimer linkage structure of human immunodeficiency virus type 1 genomic RNA. J Biol Chem (1994) 2.71

Primary sequence of the 16S ribosomal RNA of Escherichia coli. Nucleic Acids Res (1975) 2.67

Crystal structure of yeast tRNAAsp. Nature (1980) 2.61

A general secondary-structure model for procaryotic and eucaryotic RNAs from the small ribosomal subunits. Eur J Biochem (1981) 2.60

Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site. Structure (2001) 2.57

The determination of the primary structure of the 16S ribosomal RNA of Escherichia coli. III. Further studies. Biochimie (1975) 2.57

A loop-loop "kissing" complex is the essential part of the dimer linkage of genomic HIV-1 RNA. Proc Natl Acad Sci U S A (1996) 2.56

The conformation of chicken, rat and human U1A RNAs in solution. Nucleic Acids Res (1981) 2.50

On the wobble GoU and related pairs. RNA (2000) 2.47

[Primary structure of transfer RNA]. Biochimie (1972) 2.43

Location of ribosomal protein binding sites on 16S ribosomal RNA. Proc Natl Acad Sci U S A (1972) 2.43

Derivation of the three-dimensional architecture of bacterial ribonuclease P RNAs from comparative sequence analysis. J Mol Biol (1998) 2.42

The role of exportin-t in selective nuclear export of mature tRNAs. EMBO J (1998) 2.40

tRNAs as primer of reverse transcriptases. Biochimie (1995) 2.37

Conserved geometrical base-pairing patterns in RNA. Q Rev Biophys (1998) 2.34

A dual role of the putative RNA dimerization initiation site of human immunodeficiency virus type 1 in genomic RNA packaging and proviral DNA synthesis. J Virol (1996) 2.33

Structural organization of the 16S ribosomal RNA from E. coli. Topography and secondary structure. Nucleic Acids Res (1981) 2.32

TectoRNA: modular assembly units for the construction of RNA nano-objects. Nucleic Acids Res (2001) 2.31

Involvement of a GNRA tetraloop in long-range RNA tertiary interactions. J Mol Biol (1994) 2.29

The secondary structure of the protein L1 binding region of ribosomal 23S RNA. Homologies with putative secondary structures of the L11 mRNA and of a region of mitochondrial 16S rRNA. Nucleic Acids Res (1981) 2.26

Specific initiation and switch to elongation of human immunodeficiency virus type 1 reverse transcription require the post-transcriptional modifications of primer tRNA3Lys. EMBO J (1996) 2.24

MANIP: an interactive tool for modelling RNA. J Mol Graph Model (1999) 2.24

Dimerization of human immunodeficiency virus type 1 RNA involves sequences located upstream of the splice donor site. Nucleic Acids Res (1994) 2.21

Relaxation of a transfer RNA specificity by removal of modified nucleotides. Nature (1990) 2.20

Partial nucleotide sequence of 16S ribosomal RNA from E. coli. Nat New Biol (1972) 2.17

Nucleotide sequences present within the 16S ribosomal RNA of Escherichia coli. Nature (1970) 2.15

Location and characteristics of ribosomal protein binding sites in the 16S RNA of Escherichia coli. Nucleic Acids Res (1975) 2.15

A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses. Curr Biol (1994) 2.13

RNA-RNA interaction is required for the formation of specific bicoid mRNA 3' UTR-STAUFEN ribonucleoprotein particles. EMBO J (1997) 2.13

Spectrophotometric determination of protein concentration in cell extracts containing tRNA's and rRNA's. Anal Biochem (1973) 2.09

Transfer RNA-mediated editing in threonyl-tRNA synthetase. The class II solution to the double discrimination problem. Cell (2000) 2.05

The human immunodeficiency virus type 1 Gag polyprotein has nucleic acid chaperone activity: possible role in dimerization of genomic RNA and placement of tRNA on the primer binding site. J Virol (1999) 2.04

Dimerization of retroviral genomic RNAs: structural and functional implications. Biochimie (1996) 2.03

Xenopus tropicalis U6 snRNA genes transcribed by Pol III contain the upstream promoter elements used by Pol II dependent U snRNA genes. Nucleic Acids Res (1987) 2.02