Published in Nucleic Acids Res on June 11, 1980
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res (1981) 61.59
Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids. Microbiol Rev (1983) 23.08
Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs. Nucleic Acids Res (1981) 4.53
The primary and secondary structure of yeast 26S rRNA. Nucleic Acids Res (1981) 4.10
Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes. Nucleic Acids Res (1981) 4.04
Antibiotic resistance mutations in 16S and 23S ribosomal RNA genes of Escherichia coli. Nucleic Acids Res (1984) 3.94
Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species. Nucleic Acids Res (1981) 3.83
The sequence of the ribosomal 16S RNA from Proteus vulgaris. Sequence comparison with E. coli 16S RNA and its use in secondary model building. Nucleic Acids Res (1981) 3.43
The rRNA operon from Zea mays chloroplasts: nucleotide sequence of 23S rDNA and its homology with E.coli 23S rDNA. Nucleic Acids Res (1981) 3.23
Nucleotide sequence of a crustacean 18S ribosomal RNA gene and secondary structure of eukaryotic small subunit ribosomal RNAs. Nucleic Acids Res (1984) 2.57
Structural organization of the 16S ribosomal RNA from E. coli. Topography and secondary structure. Nucleic Acids Res (1981) 2.32
Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements. Insect Mol Biol (2006) 2.30
Structure and function of ribosomal RNA. Biochem J (1985) 1.90
The major transcripts of the kinetoplast DNA of Trypanosoma brucei are very small ribosomal RNAs. Nucleic Acids Res (1983) 1.81
Localisation of a series of intra-RNA cross-links in 16S RNA, induced by ultraviolet irradiation of Escherichia coli 30S ribosomal subunits. Nucleic Acids Res (1980) 1.75
The localization of multiple sites on 16S RNA which are cross-linked to proteins S7 and S8 in Escherichia coli 30S ribosomal subunits by treatment with 2-iminothiolane. Nucleic Acids Res (1983) 1.52
Xenopus laevis 18S ribosomal RNA: experimental determination of secondary structural elements, and locations of methyl groups in the secondary structure model. Nucleic Acids Res (1984) 1.46
Estimating substitution rates in ribosomal RNA genes. Genetics (1995) 1.43
Destabilization of secondary structure in 16S ribosomal RNA by dimethylation of two adjacent adenosines. Nucleic Acids Res (1981) 1.24
The 3'-terminal sequence of the small subunit ribosomal RNA from hamster mitochondria. Nucleic Acids Res (1980) 1.13
Long range RNA-RNA interactions in the 30 S ribosomal subunit of E. coli. Nucleic Acids Res (1985) 1.03
Expression of the gene for ribosomal protein S20: effects of gene dosage. J Bacteriol (1983) 1.01
Secondary structure model for the complete simian virus 50 late precursor mRNA. Nucleic Acids Res (1982) 0.99
S16 throws a conformational switch during assembly of 30S 5' domain. Nat Struct Mol Biol (2009) 0.99
Functional conservation near the 3' end of eukaryotic small subunit RNA: photochemical crosslinking of P site-bound acetylvalyl-tRNA to 18S RNA of yeast ribosomes. Proc Natl Acad Sci U S A (1982) 0.92
Genetic evidence against the 16S ribosomal RNA helix 27 conformational switch model. RNA (2004) 0.89
The Escherichia coli ribosomal RNA leader nut region interacts specifically with mature 16S RNA. Nucleic Acids Res (1995) 0.88
Alternative conformations in Escherichia coli 16S ribosomal RNA. Proc Natl Acad Sci U S A (1985) 0.87
A ribonucleoprotein fragment of the 30 S ribosome of E. coli: evidence for long range RNA-RNA interactions. Nucleic Acids Res (1982) 0.79
Protein-RNA crosslinking in Escherichia coli 30S ribosomal subunits. Identification of a 16S rRNA fragment crosslinked to protein S12 by the use of the chemical crosslinking reagent 1-ethyl-3-dimethyl-aminopropylcarbodiimide. Nucleic Acids Res (1982) 0.79
A ribonucleoprotein fragment of the 30 S ribosome of E. coli containing two contiguous domains of the 16 S RNA. Nucleic Acids Res (1982) 0.77
Electron microscopy of the secondary structure in partially denatured rRNAs of Escherichia coli and Bacillus stearothermophilus. J Bacteriol (1985) 0.75
A new method for sequencing DNA. Proc Natl Acad Sci U S A (1977) 250.51
Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A (1978) 32.65
How ribosomes select initiator regions in mRNA: base pair formation between the 3' terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli. Proc Natl Acad Sci U S A (1975) 10.60
Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence. Nucleic Acids Res (1980) 9.50
The complete nucleotide sequence of the ribosomal 16-S RNA from Excherichia coli. Experimental details and cistron heterogeneities. Eur J Biochem (1979) 6.08
Protection of specific sites in 16 S RNA from chemical modification by association of 30 S and 50 S ribosomes. J Mol Biol (1977) 5.66
The use of ribonuclease U2 in RNA sequence determination. Some corrections in the catalog of oligomers produced by ribonuclease T1 digestion of Escherichia coli 16S ribosomal RNA. J Mol Evol (1974) 5.26
Studies on the environment of protein S7 within the 30-S subunit Escherichia coli ribosomes. Eur J Biochem (1976) 4.60
The topography of the 5' end of 16-S RNA in the presence and absence of ribosomal proteins S4 and S20. Eur J Biochem (1980) 4.22
The sequence of Escherichia coli ribosomal 16 S RNA determined by new rapid gel methods. FEBS Lett (1978) 3.19
Micro thin-layer techniques for rapid sequence analysis of 32P-labeled RNA: double digestion and pancreatic ribonuclease analyses. Anal Biochem (1977) 3.18
Nucleotide sequences of Escherichia coli 16-S RNA associated with ribosomal proteins S7, S9, S10, S14 and S19. Eur J Biochem (1975) 2.66
Altered topography of 16S RNA in the inactive form of Escherichia coli 30S ribosomal subunits. Biochemistry (1978) 2.44
Experimental determination of interacting sequences in ribosomal RNA. Nature (1979) 2.32
The structure of the RNA binding site of ribosomal proteins S8 and S15. J Biol Chem (1979) 2.24
Homology of the 3' terminal sequences of the 18S rRNA of Bombyx mori and the 16S rRNA of Escherchia coli. Nucleic Acids Res (1979) 2.08
Binding sites for ribosomal proteins S8 and S15 in the 16 S RNA of Escherichia coli. Biochim Biophys Acta (1979) 2.04
Max-Planck-Institut für Molekulare Genetik, Abteilung Wittmann, Berlin-Dahlem, GFR. Nucleic Acids Res (1979) 1.89
Localisation of a series of intra-RNA cross-links in 16S RNA, induced by ultraviolet irradiation of Escherichia coli 30S ribosomal subunits. Nucleic Acids Res (1980) 1.75
A series of specific ribonucleoprotein fragments from the 30-S subparticle of Escherichia coli ribosomes. Eur J Biochem (1972) 1.50
Base-pairing between distant regions of the Escherichia coli 16 S ribosomal RNA in solution. J Mol Biol (1979) 1.36
Characterisation of RNA fragments obtained by mild nuclease digestion of 30-S ribosomal subunits from Escherichia coli. Eur J Biochem (1977) 1.32
Conformational analysis of RNA molecules by partial RNAse digestion and two dimensional acrylamide gel electrophoresis. Application to E. coli 5S RNA. Biochimie (1971) 1.12
RNA codewords and protein synthesis, VII. On the general nature of the RNA code. Proc Natl Acad Sci U S A (1965) 5.17
Studies on the environment of protein S7 within the 30-S subunit Escherichia coli ribosomes. Eur J Biochem (1976) 4.60
Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes. Nucleic Acids Res (1981) 4.04
Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species. Nucleic Acids Res (1981) 3.83
RNA codewords and protein synthesis, 8. Nucleotide sequences of synonym codons for arginine, valine, cysteine, and alanine. Proc Natl Acad Sci U S A (1965) 2.86
Application of a rapid gel method to the sequencing of fragments of 16S ribosomal RNA from Escherichia coli. Nucleic Acids Res (1978) 2.85
Nucleotide sequences of Escherichia coli 16-S RNA associated with ribosomal proteins S7, S9, S10, S14 and S19. Eur J Biochem (1975) 2.66
Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature (1997) 2.41
Refined secondary structure models for the 16S and 23S ribosomal RNA of Escherichia coli. Nucleic Acids Res (1983) 2.38
Experimental determination of interacting sequences in ribosomal RNA. Nature (1979) 2.32
Specific cross-linking of proteins S7 and L4 to ribosomal RNA, by UV irradiation of Escherichia coli ribosomal subunits. Mol Gen Genet (1975) 2.20
The structure of ribosomal RNA and its organization relative to ribosomal protein. Prog Nucleic Acid Res Mol Biol (1983) 2.12
The RNA code and protein synthesis. Cold Spring Harb Symp Quant Biol (1966) 1.96
Site-directed cross-linking of mRNA analogues to the Escherichia coli ribosome; identification of 30S ribosomal components that can be cross-linked to the mRNA at various points 5' with respect to the decoding site. Nucleic Acids Res (1989) 1.93
Structure and function of ribosomal RNA. Biochem J (1985) 1.90
Max-Planck-Institut für Molekulare Genetik, Abteilung Wittmann, Berlin-Dahlem, GFR. Nucleic Acids Res (1979) 1.89
Localisation of a series of intra-RNA cross-links in the secondary and tertiary structure of 23S RNA, induced by ultraviolet irradiation of Escherichia coli 50S ribosomal subunits. Nucleic Acids Res (1983) 1.87
Arrangement of tRNAs in pre- and posttranslocational ribosomes revealed by electron cryomicroscopy. Cell (1997) 1.80
Three widely separated positions in the 16S RNA lie in or close to the ribosomal decoding region; a site-directed cross-linking study with mRNA analogues. EMBO J (1992) 1.76
Localisation of a series of intra-RNA cross-links in 16S RNA, induced by ultraviolet irradiation of Escherichia coli 30S ribosomal subunits. Nucleic Acids Res (1980) 1.75
The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution. J Mol Biol (2000) 1.67
Getting closer to an understanding of the three-dimensional structure of ribosomal RNA. Biochem Cell Biol (1996) 1.67
Prokaryotic translation: the interactive pathway leading to initiation. Trends Genet (1994) 1.64
The Escherichia coli large ribosomal subunit at 7.5 A resolution. Structure (1999) 1.60
Precise localisation of three intra-RNA cross-links in 23S RNA and one in 5S RNA, induced by treatment of Escherichia coli 50S ribosomal subunits with bis-(2-chloroethyl)-methylamine. Nucleic Acids Res (1982) 1.56
Identification of intermolecular RNA cross-links at the subunit interface of the Escherichia coli ribosome. Biochemistry (1992) 1.56
Selective isolation and detailed analysis of intra-RNA cross-links induced in the large ribosomal subunit of E. coli: a model for the tertiary structure of the tRNA binding domain in 23S RNA. Nucleic Acids Res (1990) 1.54
The 70S Escherichia coli ribosome at 23 A resolution: fitting the ribosomal RNA. Structure (1995) 1.54
The localization of multiple sites on 16S RNA which are cross-linked to proteins S7 and S8 in Escherichia coli 30S ribosomal subunits by treatment with 2-iminothiolane. Nucleic Acids Res (1983) 1.52
Codon recognition in polypeptide chain termination: site directed crosslinking of termination codon to Escherichia coli release factor 2. Nucleic Acids Res (1990) 1.51
A series of specific ribonucleoprotein fragments from the 30-S subparticle of Escherichia coli ribosomes. Eur J Biochem (1972) 1.50
Xenopus laevis 18S ribosomal RNA: experimental determination of secondary structural elements, and locations of methyl groups in the secondary structure model. Nucleic Acids Res (1984) 1.46
Precise localization of the site of cross-linking between protein L4 and 23S ribonucleic acid induced by mild ultraviolet irradiation of Escherichia coli 50S ribosomal subunits. Biochemistry (1980) 1.44
RNA-protein cross-linking in Escherichia coli 50S ribosomal subunits; determination of sites on 23S RNA that are cross-linked to proteins L2, L4, L24 and L27 by treatment with 2-iminothiolane. Nucleic Acids Res (1988) 1.43
A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. I. Fitting the RNA to a 3D electron microscopic map at 20 A. J Mol Biol (1997) 1.42
The three-dimensional folding of ribosomal RNA; localization of a series of intra-RNA cross-links in 23S RNA induced by treatment of Escherichia coli 50S ribosomal subunits with bis-(2-chloroethyl)-methylamine. Nucleic Acids Res (1991) 1.39
A model for the spatial arrangement of the proteins in the large subunit of the Escherichia coli ribosome. EMBO J (1988) 1.38
RNA sequences associated with proteins L1, L9, and L5, L18, L25, in ribonucleoprotein fragments isolated from the 50-S subunit of Escherichia coli ribosomes. Eur J Biochem (1976) 1.37
The tertiary folding of Escherichia coli 16S RNA, as studied by in situ intra-RNA cross-linking of 30S ribosomal subunits with bis-(2-chloroethyl)-methylamine. Nucleic Acids Res (1986) 1.35
From stand-by to decoding site. Adjustment of the mRNA on the 30S ribosomal subunit under the influence of the initiation factors. RNA (1995) 1.34
Identification of the oligonucleotide and oligopeptide involved in an RNA--protein crosslink induced by ultraviolet irradiation of Escherichia coli 30 S ribosomal subunits. J Mol Biol (1978) 1.33
Characterisation of RNA fragments obtained by mild nuclease digestion of 30-S ribosomal subunits from Escherichia coli. Eur J Biochem (1977) 1.32
Intra-RNA and RNA-protein cross-linking techniques in Escherichia coli ribosomes. Methods Enzymol (1988) 1.31
The use of formaldehyde in RNA-protein cross-linking studies with ribosomal subunits from Escherichia coli. Eur J Biochem (1977) 1.31
Localization of a series of RNA-protein cross-link sites in the 23S and 5S ribosomal RNA from Escherichia coli, induced by treatment of 50S subunits with three different bifunctional reagents. Nucleic Acids Res (1990) 1.29
The decoding region of 16S RNA; a cross-linking study of the ribosomal A, P and E sites using tRNA derivatized at position 32 in the anticodon loop. EMBO J (1994) 1.28
RNA-protein cross-linking in Escherichia coli 30S ribosomal subunits; determination of sites on 16S RNA that are cross-linked to proteins S3, S4, S7, S9, S10, S11, S17, S18 and S21 by treatment with bis-(2-chloroethyl)-methylamine. Nucleic Acids Res (1987) 1.23
Site-directed cross-linking of mRNA analogues to 16S ribosomal RNA; a complete scan of cross-links from all positions between '+1' and '+16' on the mRNA, downstream from the decoding site. Nucleic Acids Res (1993) 1.22
Ribosome structure. Annu Rev Biochem (1978) 1.22
Covalent cross-linking of poly(A) to Escherichia coli ribosomes, and localization of the cross-link site within the 16S RNA. Nucleic Acids Res (1988) 1.22
A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. II. The RNA-protein interaction data. J Mol Biol (1997) 1.21
The use of 2-iminothiolane as an RNA-protein cross-linking agent in Escherichia coli ribosomes, and the localisation on 23S RNA of sites cross-linked to proteins L4, L6, L21, L23, L27 and L29. Nucleic Acids Res (1981) 1.19
Chemical cross-linking of protein to RNA within intact ribosomal subunits from Escherichia coli. Mol Gen Genet (1978) 1.17
Investigation of the tertiary folding of Escherichia coli ribosomal RNA by intra-RNA cross-linking in vivo. J Mol Biol (1986) 1.17
The Escherichia coli 30S ribosomal subunit; an optimized three-dimensional fit between the ribosomal proteins and the 16S RNA. EMBO J (1988) 1.16
Investigation of the tertiary folding of Escherichia coli 16S RNA by in situ intra-RNA cross-linking within 30S ribosomal subunits. Nucleic Acids Res (1985) 1.16
The use of azidoarylimidoesters in RNA-protein cross-linking studies with Escherichia coli ribosomes. J Mol Biol (1980) 1.14
Correlation of the expansion segments in mammalian rRNA with the fine structure of the 80 S ribosome; a cryoelectron microscopic reconstruction of the rabbit reticulocyte ribosome at 21 A resolution. J Mol Biol (1998) 1.12
Stem-loop IV of 5S rRNA lies close to the peptidyltransferase center. Proc Natl Acad Sci U S A (1994) 1.10
Site-directed cross-linking studies on the E. coli tRNA-ribosome complex: determination of sites labelled with an aromatic azide attached to the variable loop or aminoacyl group of tRNA. Nucleic Acids Res (1993) 1.09
Two specific ribonucleoprotein fragments from the 50-S sub-particle of Escherichia coli ribosomes. Eur J Biochem (1974) 1.09
The ribosomal neighbourhood of the central fold of tRNA: cross-links from position 47 of tRNA located at the A, P or E site. Nucleic Acids Res (1995) 1.07
The environment of 5S rRNA in the ribosome: cross-links to the GTPase-associated area of 23S rRNA. Nucleic Acids Res (1998) 1.06
RNA-protein cross-linking in Escherichia coli ribosomal subunits: localization of sites on 16S RNA which are cross-linked to proteins S17 and S21 by treatment with 2-iminothiolane. Nucleic Acids Res (1986) 1.05
RNA-protein cross-linking in Escherichia coli 30S ribosomal subunits; determination of sites on 16S RNA that are cross-linked to proteins S3, S4, S5, S7, S8, S9, S11, S13, S19 and S21 by treatment with methyl p-azidophenyl acetimidate. Nucleic Acids Res (1987) 1.04
Evidence for RNA-RNA cross-link formation in Escherichia coli ribosomes. Nucleic Acids Res (1978) 1.04
Contacts between 16S ribosomal RNA and mRNA, within the spacer region separating the AUG initiator codon and the Shine-Dalgarno sequence; a site-directed cross-linking study. Nucleic Acids Res (1994) 1.03
Evidence against an Interaction between the mRNA downstream box and 16S rRNA in translation initiation. J Bacteriol (2001) 1.02
Reagents suitable for the crosslinking of nucleic acids to proteins. Anal Biochem (1980) 1.01
Loop IV of 5S ribosomal RNA has contacts both to domain II and to domain V of the 23S RNA. RNA (1996) 1.01
How are tRNAs and mRNA arranged in the ribosome? An attempt to correlate the stereochemistry of the tRNA-mRNA interaction with constraints imposed by the ribosomal topography. Nucleic Acids Res (1992) 1.01
Secondary structure and evolution of ribosomal RNA. Nature (1981) 1.00
RNA-protein cross-linking in Eschericia coli 30S ribosomal subunits: a method for the direct analysis of the RNA regions involved in the cross-links. Nucleic Acids Res (1978) 1.00
The ribosomal environment of tRNA: crosslinks to rRNA from positions 8 and 20:1 in the central fold of tRNA located at the A, P, or E site. RNA (1995) 0.99
The topography of the 3'-terminal region of Escherichia coli 16S ribosomal RNA; an intra-RNA cross-linking study. Nucleic Acids Res (1992) 0.98
Matching the crystallographic structure of ribosomal protein S7 to a three-dimensional model of the 16S ribosomal RNA. RNA (1998) 0.98
The path of the growing peptide chain through the 23S rRNA in the 50S ribosomal subunit; a comparative cross-linking study with three different peptide families. Nucleic Acids Res (1998) 0.97
A preliminary three-dimensional arrangement of the proteins in the Escherichia coli 30-S ribosomal sub-particle. Eur J Biochem (1973) 0.96
Mapping the path of the nascent peptide chain through the 23S RNA in the 50S ribosomal subunit. Nucleic Acids Res (1995) 0.95
The ribosome of Escherichia coli. Prog Nucleic Acid Res Mol Biol (1976) 0.93
Contacts between the growing peptide chain and the 23S RNA in the 50S ribosomal subunit. Nucleic Acids Res (1994) 0.93
The environment of 5S rRNA in the ribosome: cross-links to 23S rRNA from sites within helices II and III of the 5S molecule. Nucleic Acids Res (1999) 0.92
An improved technique for the analysis of ribonucleoprotein fragments from Escherichia coli 30S ribosomes. Eur J Biochem (1971) 0.92
Flexibility of the nascent polypeptide chain within the ribosome--contacts from the peptide N-terminus to a specific region of the 30S subunit. Eur J Biochem (1998) 0.92
The use of sym-triazine trichloride in RNA-protein cross-linking studies with Escherichia coli ribosomal subunits. Mol Gen Genet (1979) 0.92
A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. III. The topography of the functional centre. J Mol Biol (1997) 0.90
Protein binding sites on Escherichia coli 16S RNA; RNA regions that are protected by proteins S7, S14 and S19 in the presence or absence of protein S9. Nucleic Acids Res (1987) 0.90
Protein binding sites on Escherichia coli 16S ribosomal RNA; RNA regions that are protected by proteins S7, S9 and S19, and by proteins S8, S15 and S17. Nucleic Acids Res (1988) 0.90
Characterization of crystals of small ribosomal subunits. J Mol Biol (1988) 0.87
Direct localization by cryo-electron microscopy of secondary structural elements in Escherichia coli 23 S rRNA which differ from the corresponding regions in Haloarcula marismortui. J Mol Biol (2001) 0.87
A specific ribonucleoprotein fragment from Escherichia coli 30-S ribosomes. Location of the RNA component in 16-S RNA. Eur J Biochem (1973) 0.86
30S ribosomal proteins cross-linked to 16S RNA by periodate oxidation followed by borohydride reduction. Mol Biol Rep (1978) 0.86