Weak male-driven molecular evolution in rodents.

PubWeight™: 1.40‹?› | Rank: Top 5%

🔗 View Article (PMC 43042)

Published in Proc Natl Acad Sci U S A on January 18, 1994

Authors

B H Chang1, L C Shimmin, S K Shyue, D Hewett-Emmett, W H Li

Author Affiliations

1: Center for Demographic and Population Genetics, University of Texas, Houston 77225.

Articles citing this

Estimating divergence times in large molecular phylogenies. Proc Natl Acad Sci U S A (2012) 13.49

Inferring the history of speciation in house mice from autosomal, X-linked, Y-linked and mitochondrial genes. Mol Ecol (2008) 1.96

The scale of mutational variation in the murid genome. Genome Res (2005) 1.95

Characteristics, causes and evolutionary consequences of male-biased mutation. Proc Biol Sci (2007) 1.57

The causes of synonymous rate variation in the rodent genome. Can substitution rates be used to estimate the sex bias in mutation rate? Genetics (1999) 1.39

Discordant phylogeographic patterns between the Y chromosome and mitochondrial DNA in the house mouse: selection on the Y chromosome? Genetics (1997) 1.22

Doubts about complex speciation between humans and chimpanzees. Trends Ecol Evol (2009) 1.10

Mammalian male mutation bias: impacts of generation time and regional variation in substitution rates. J Mol Evol (2006) 1.09

Insertions and deletions are male biased too: a whole-genome analysis in rodents. Genome Res (2004) 1.05

Analysis of mutation rates in the SMCY/SMCX genes shows that mammalian evolution is male driven. Mamm Genome (1997) 1.05

Molecular clocks and explosive radiations. J Mol Evol (2003) 0.99

Genome analyses substantiate male mutation bias in many species. Bioessays (2011) 0.97

Characterization of the bovine pseudoautosomal boundary: Documenting the evolutionary history of mammalian sex chromosomes. Genome Res (2008) 0.96

Male-biased transmission of deleterious mutations to the progeny in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2003) 0.95

GC-biased gene conversion in yeast is specifically associated with crossovers: molecular mechanisms and evolutionary significance. Mol Biol Evol (2013) 0.95

Interpreting the Dependence of Mutation Rates on Age and Time. PLoS Biol (2016) 0.93

Evolution of DMY, a newly emergent male sex-determination gene of medaka fish. Genetics (2004) 0.91

Patterns of Y and X chromosome DNA sequence divergence during the Felidae radiation. Genetics (1998) 0.90

Evidence that replication-associated mutation alone does not explain between-chromosome differences in substitution rates. Genome Biol Evol (2009) 0.88

Male-driven evolution in closely related species of the mouse genus Mus. J Mol Evol (2005) 0.88

Substitution rate heterogeneity and the male mutation bias. J Mol Evol (2006) 0.87

Molecular evidence from the nuclear genome for the time frame of human evolution. J Mol Evol (1997) 0.83

Sperm competition can drive a male-biased mutation rate. J Theor Biol (2007) 0.79

The phenotypic impact of the male-specific region of chromosome-Y in inbred mating: the role of genetic variants and gene duplications in multiple inbred rat strains. Biol Sex Differ (2016) 0.77

Male Mutation Bias Is the Main Force Shaping Chromosomal Substitution Rates in Monotreme Mammals. Genome Biol Evol (2017) 0.75

Articles cited by this

DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A (1977) 790.54

The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol (1987) 266.90

Evidence for higher rates of nucleotide substitution in rodents than in man. Proc Natl Acad Sci U S A (1985) 8.18

Mutation rates differ among regions of the mammalian genome. Nature (1989) 7.63

Artifactual variation in randomly amplified polymorphic DNA banding patterns. Biotechniques (1993) 5.49

Estimation of evolutionary distance between nucleotide sequences. Mol Biol Evol (1984) 5.39

An evaluation of the molecular clock hypothesis using mammalian DNA sequences. J Mol Evol (1987) 4.82

Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications. J Mol Evol (1984) 4.42

Evolution of the Zfx and Zfy genes: rates and interdependence between the genes. Mol Biol Evol (1993) 3.78

Kinetics of spermatogenesis in mammals: seminiferous epithelium cycle and spermatogonial renewal. Physiol Rev (1972) 3.74

Male-driven molecular evolution: a model and nucleotide sequence analysis. Cold Spring Harb Symp Quant Biol (1987) 3.66

Spontaneous mutation in man. Adv Hum Genet (1975) 2.96

The spermatogonial stem cell population in adult rats. I. Their morphology, proliferation and maturation. Anat Rec (1971) 2.86

Male-driven evolution of DNA sequences. Nature (1993) 2.86

Neighboring base effects on substitution rates in pseudogenes. Mol Biol Evol (1986) 2.11

The sex-determining region of the mouse Y chromosome encodes a protein with a highly acidic domain and 13 zinc fingers. Cell (1989) 1.34

Duplication, deletion, and polymorphism in the sex-determining region of the mouse Y chromosome. Science (1989) 1.17

A maximum likelihood estimate of the sex ratio of mutation rates in haemophilia A. Hum Genet (1983) 1.16

Mouse Zfx protein is similar to Zfy-2: each contains an acidic activating domain and 13 zinc fingers. Mol Cell Biol (1990) 1.15

Interchromosomal gene conversion as a possible mechanism for explaining divergence patterns of ZFY-related genes. J Mol Evol (1992) 0.91

Potential problems in estimating the male-to-female mutation rate ratio from DNA sequence data. J Mol Evol (1993) 0.89

Articles by these authors

Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci U S A (1979) 41.08

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res (1987) 26.51

Statistical tests of neutrality of mutations. Genetics (1993) 24.94

Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci U S A (1987) 10.66

Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J Mol Evol (1993) 9.43

Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am J Hum Genet (2001) 9.35

Evidence for higher rates of nucleotide substitution in rodents than in man. Proc Natl Acad Sci U S A (1985) 8.18

Mutation rates differ among regions of the mammalian genome. Nature (1989) 7.63

Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc Natl Acad Sci U S A (1989) 6.99

Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons. Nucleic Acids Res (1986) 5.68

Linkage disequilibrium in subdivided populations. Genetics (1973) 5.22

Distribution of nucleotide differences between two randomly chosen cistrons in a finite population. Genetics (1977) 5.22

An evolutionary perspective on synonymous codon usage in unicellular organisms. J Mol Evol (1986) 5.05

Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites. Mol Biol Evol (1995) 4.88

Drift variances of heterozygosity and genetic distance in transient states. Genet Res (1975) 4.45

Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications. J Mol Evol (1984) 4.42

Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages. J Mol Evol (1999) 4.37

Pseudogenes as a paradigm of neutral evolution. Nature (1981) 4.33

Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock. Mol Biol Evol (1992) 4.31

The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias. Mol Biol Evol (1987) 4.30

Is the guinea-pig a rodent? Nature (1991) 4.25

Rates of nucleotide substitution in primates and rodents and the generation-time effect hypothesis. Mol Phylogenet Evol (1996) 3.97

Transposable elements are found in a large number of human protein-coding genes. Trends Genet (2001) 3.89

Human hepatic lipase. Cloned cDNA sequence, restriction fragment length polymorphisms, chromosomal localization, and evolutionary relationships with lipoprotein lipase and pancreatic lipase. J Biol Chem (1988) 3.74

On the rate of DNA sequence evolution in Drosophila. J Mol Evol (1989) 3.74

Non-random association between electromorphs and inversion chromosomes in finite populations. Genet Res (1980) 3.69

Patterns of nucleotide substitution in pseudogenes and functional genes. J Mol Evol (1982) 3.43

The molecular clock runs more slowly in man than in apes and monkeys. Nature (1987) 3.42

Comparison of the 5' regions of human and mouse carbonic anhydrase II genes and identification of possible regulatory elements. Biochim Biophys Acta (1985) 3.35

Simple method for constructing phylogenetic trees from distance matrices. Proc Natl Acad Sci U S A (1981) 3.09

Probability of identical monomorphism in related species. Genet Res (1975) 2.91

Male-driven evolution of DNA sequences. Nature (1993) 2.86

The size distribution of insertions and deletions in human and rodent pseudogenes suggests the logarithmic gap penalty for sequence alignment. J Mol Evol (1995) 2.77

Carbonic anhydrase II deficiency identified as the primary defect in the autosomal recessive syndrome of osteopetrosis with renal tubular acidosis and cerebral calcification. Proc Natl Acad Sci U S A (1983) 2.73

Worldwide DNA sequence variation in a 10-kilobase noncoding region on human chromosome 22. Proc Natl Acad Sci U S A (2000) 2.67

Estimating the age of the common ancestor of a sample of DNA sequences. Mol Biol Evol (1997) 2.64

Global patterns of human DNA sequence variation in a 10-kb region on chromosome 1. Mol Biol Evol (2001) 2.64

Origins of U.S. Hispanics. Implications for diabetes. Diabetes Care (1991) 2.47

Nucleotide sequence of human liver carbonic anhydrase II cDNA. Nucleic Acids Res (1987) 2.46

Coalescing into the 21st century: An overview and prospects of coalescent theory. Theor Popul Biol (1999) 2.38

Adenovirus-mediated heme oxygenase-1 gene transfer inhibits the development of atherosclerosis in apolipoprotein E-deficient mice. Circulation (2001) 2.32

Accumulation of mutations in sexual and asexual populations. Genet Res (1987) 2.30

Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons. J Mol Evol (1987) 2.27

Maximum likelihood estimation of population parameters. Genetics (1993) 2.01

Total number of individuals affected by a single deleterious mutation in a finite population. Am J Hum Genet (1972) 1.98

High polymorphism at the human melanocortin 1 receptor locus. Genetics (1999) 1.94

Stable linkage disequilibrium without epistasis in subdivided populations. Theor Popul Biol (1974) 1.93

Distribution of nucleotide differences between two randomly chosen cistrons in a subdivided population: the finite island model. Theor Popul Biol (1976) 1.86

Sequence, structure, receptor-binding domains and internal repeats of human apolipoprotein B-100. Nature (1986) 1.85

Molecular phylogeny of extant gymnosperms and seed plant evolution: analysis of nuclear 18S rRNA sequences. Mol Biol Evol (1997) 1.85

Molecular phylogeny of the kingdoms Animalia, Plantae, and Fungi. Mol Biol Evol (1989) 1.83

Deletions in processed pseudogenes accumulate faster in rodents than in humans. J Mol Evol (1989) 1.73

Phylogenetic origins and adaptive evolution of avian and mammalian haemoglobin genes. Nature (1982) 1.70

The transient distribution of allele frequencies under mutation pressure. Genet Res (1976) 1.70

Chromosomal location and evolutionary rate variation in enterobacterial genes. Science (1989) 1.67

The molecular clock ticks regularly in muroid rodents and hamsters. J Mol Evol (1992) 1.66

Neuroendocrine differentiation in 32 cases of so-called sclerosing hemangioma of the lung: identified by immunohistochemical and ultrastructural study. Am J Surg Pathol (1997) 1.64

Selective constraints, amino acid composition, and the rate of protein evolution. Mol Biol Evol (2000) 1.63

Genomic divergence between human and chimpanzee estimated from large-scale alignments of genomic sequences. J Hered (2002) 1.63

Origins and molecular evolution of the carbonic anhydrase isozymes. Ann N Y Acad Sci (1984) 1.62

Higher rates of amino acid substitution in rodents than in humans. Mol Phylogenet Evol (1992) 1.61

Persistence of common alleles in two related populations or species. Genetics (1977) 1.54

Mutation pattern variation among regions of the primate genome. J Mol Evol (1997) 1.53

A rapid heuristic algorithm for finding minimum evolution trees. Mol Phylogenet Evol (2000) 1.50

Rate of gene silencing at duplicate loci: a theoretical study and interpretation of data from tetraploid fishes. Genetics (1980) 1.49

Estimation of confidence in phylogeny: the complete-and-partial bootstrap technique. Mol Phylogenet Evol (1995) 1.49

Ubiquitin genes as a paradigm of concerted evolution of tandem repeats. J Mol Evol (1987) 1.47

Simulating allele frequencies in a population and the genetic differentiation of populations under mutation pressure. Theor Popul Biol (1983) 1.44

Assessment of compositional heterogeneity within and between eukaryotic genomes. Genome Res (2000) 1.43

What amino acid properties affect protein evolution? J Mol Evol (1998) 1.42

Directional mutational pressure affects the amino acid composition and hydrophobicity of proteins in bacteria. Genetica (1998) 1.42

Maintenance of genetic variability under mutation and selection pressures in a finite population. Proc Natl Acad Sci U S A (1977) 1.41

Carbonic anhydrase II deficiency in 12 families with the autosomal recessive syndrome of osteopetrosis with renal tubular acidosis and cerebral calcification. N Engl J Med (1985) 1.39

The complete cDNA and amino acid sequence of human apolipoprotein B-100. J Biol Chem (1986) 1.39

Densities, length proportions, and other distributional features of repetitive sequences in the human genome estimated from 430 megabases of genomic sequence. Gene (2000) 1.38

Phylogenetic analysis based on rRNA sequences supports the archaebacterial rather than the eocyte tree. Nature (1989) 1.37

Sex differences in mutation rate in higher primates estimated from AMG intron sequences. J Mol Evol (1997) 1.36

Molecular cloning and expression of partial cDNAs and deduced amino acid sequence of a carboxyl-terminal fragment of human apolipoprotein B-100. Proc Natl Acad Sci U S A (1985) 1.35

Contrasting rates of nucleotide substitution in the X-linked and Y-linked zinc finger genes. J Mol Evol (1994) 1.28

A family of genes encode the multiple forms of the Saccharomyces cerevisiae ribosomal proteins equivalent to the Escherichia coli L12 protein and a single form of the L10-equivalent ribosomal protein. J Bacteriol (1990) 1.27

Lipoprotein lipase and hepatic lipase mRNA tissue specific expression, developmental regulation, and evolution. J Lipid Res (1989) 1.27

Statistical tests of molecular phylogenies. Methods Enzymol (1990) 1.26

Trichromatic vision in prosimians. Nature (1999) 1.25

Evolutionary divergence and salinity-mediated selection in halophilic archaea. Microbiol Mol Biol Rev (1997) 1.24

Structure of apolipoprotein B-100 of human low density lipoproteins. Arteriosclerosis (1989) 1.24

Structure and evolution of the apolipoprotein multigene family. J Mol Biol (1986) 1.21

Human DNA sequence variation in a 6.6-kb region containing the melanocortin 1 receptor promoter. Genetics (2001) 1.20

Maintenance of genetic variability under the pressure of neutral and deleterious mutations in a finite population. Genetics (1979) 1.20

Origins and antiquity of X-linked triallelic color vision systems in New World monkeys. Proc Natl Acad Sci U S A (1998) 1.18

Structure and evolution of the L11, L1, L10, and L12 equivalent ribosomal proteins in eubacteria, archaebacteria, and eucaryotes. Can J Microbiol (1989) 1.18

Molecular evolution of trichromacy in primates. Vision Res (1998) 1.17

Alternative mRNA splicing and differential promoter utilization determine tissue-specific expression of the apolipoprotein B mRNA-editing protein (Apobec1) gene in mice. Structure and evolution of Apobec1 and related nucleoside/nucleotide deaminases. J Biol Chem (1995) 1.17

Understanding the origins of AIDS viruses. Nature (1988) 1.15

Stem cells from deciduous tooth repair mandibular defect in swine. J Dent Res (2009) 1.14

Temperature-sensitive beta-lactam-tolerant mutants of Escherichia coli. J Gen Microbiol (1984) 1.14