Published in J Mol Biol on September 20, 1993
"Well-determined" regions in RNA secondary structure prediction: analysis of small subunit ribosomal RNA. Nucleic Acids Res (1995) 4.87
Using reliability information to annotate RNA secondary structures. RNA (1998) 3.75
Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors. Mol Cell Biol (2004) 3.72
RnaViz, a program for the visualisation of RNA secondary structure. Nucleic Acids Res (1997) 2.54
Transport and localization elements in myelin basic protein mRNA. J Cell Biol (1997) 2.17
RNA design rules from a massive open laboratory. Proc Natl Acad Sci U S A (2014) 1.94
Conserved RNA secondary structures in Picornaviridae genomes. Nucleic Acids Res (2001) 1.62
A long-range interaction in Qbeta RNA that bridges the thousand nucleotides between the M-site and the 3' end is required for replication. RNA (1998) 1.31
Regulation of protein translation through mRNA structure influences MHC class I loading and T cell recognition. Proc Natl Acad Sci U S A (2008) 1.28
The bunyavirus nucleocapsid protein is an RNA chaperone: possible roles in viral RNA panhandle formation and genome replication. RNA (2006) 1.20
RNA recognition site of PP7 coat protein. Nucleic Acids Res (2002) 1.19
R-CHIE: a web server and R package for visualizing RNA secondary structures. Nucleic Acids Res (2012) 1.12
ICP0 gene expression is a herpes simplex virus type 1 apoptotic trigger. J Virol (2006) 1.06
Random removal of inserts from an RNA genome: selection against single-stranded RNA. J Virol (1996) 0.95
Phenotypic characterization of three phylogenetically conserved stem-loop motifs in the mengovirus 3' untranslated region. J Virol (2001) 0.91
Silencing of Parkinson's disease-associated genes with artificial mirtron mimics of miR-1224. Nucleic Acids Res (2012) 0.90
An image processing approach to computing distances between RNA secondary structures dot plots. Algorithms Mol Biol (2009) 0.83
Biochemical characterization of a recombinant Japanese encephalitis virus RNA-dependent RNA polymerase. BMC Mol Biol (2007) 0.80
Diversity of Streptomyces spp. in Eastern Himalayan region - computational RNomics approach to phylogeny. Bioinformation (2012) 0.78
Structural and Functional Characterization of Programmed Ribosomal Frameshift Signals in West Nile Virus Strains Reveals High Structural Plasticity Among cis-Acting RNA Elements. J Biol Chem (2016) 0.77
Profiling small RNA reveals multimodal substructural signals in a Boltzmann ensemble. Nucleic Acids Res (2014) 0.77
In polycistronic Qbeta RNA, single-strandedness at one ribosome binding site directly affects translational initiations at a distal upstream cistron. Nucleic Acids Res (2010) 0.75
New insights from cluster analysis methods for RNA secondary structure prediction. Wiley Interdiscip Rev RNA (2016) 0.75
A facile inhibitor screening of SARS coronavirus N protein using nanoparticle-based RNA oligonucleotide. Int J Nanomedicine (2012) 0.75
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res (1981) 61.59
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol (1999) 41.48
Improved predictions of secondary structures for RNA. Proc Natl Acad Sci U S A (1989) 11.52
Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding. Proc Natl Acad Sci U S A (1994) 8.06
Predicting optimal and suboptimal secondary structure for RNA. Methods Enzymol (1990) 7.08
Computer prediction of RNA structure. Methods Enzymol (1989) 6.36
Secondary structure of the Tetrahymena ribosomal RNA intervening sequence: structural homology with fungal mitochondrial intervening sequences. Proc Natl Acad Sci U S A (1983) 4.78
Some simple computational methods to improve the folding of large RNAs. Nucleic Acids Res (1984) 3.69
Testing the exon theory of genes: the evidence from protein structure. Science (1994) 2.71
Structural organization of the 16S ribosomal RNA from E. coli. Topography and secondary structure. Nucleic Acids Res (1981) 2.32
Structure-function relationship of Rous sarcoma virus leader RNA. Nucleic Acids Res (1982) 2.08
[Secondary and topographic structure of ribosomal RNA 16S of Escherichia coli]. C R Seances Acad Sci D (1980) 1.73
Structure of a Bacillus subtilis endo-beta-1,4-glucanase gene. Nucleic Acids Res (1986) 1.73
Common structures of the 5' non-coding RNA in enteroviruses and rhinoviruses. Thermodynamical stability and statistical significance. J Mol Biol (1990) 1.70
Fast evaluation of internal loops in RNA secondary structure prediction. Bioinformatics (1999) 1.69
Melting and chemical modification of a cyclized self-splicing group I intron: similarity of structures in 1 M Na+, in 10 mM Mg2+, and in the presence of substrate. Biochemistry (1990) 1.40
Metrics on RNA secondary structures. J Comput Biol (2000) 1.30
Measuring residue associations in protein structures. Possible implications for protein folding. J Mol Biol (1994) 1.26
The alignment of protein structures in three dimensions. Bull Math Biol (1989) 1.12
The endogenous vascular elastase that governs development and progression of monocrotaline-induced pulmonary hypertension in rats is a novel enzyme related to the serine proteinase adipsin. J Clin Invest (1994) 1.09
Predicting common foldings of homologous RNAs. J Biomol Struct Dyn (1991) 1.07
Comparative nucleotide sequences encoding the immunity proteins and the carboxyl-terminal peptides of colicins E2 and E3. Nucleic Acids Res (1984) 1.05
The Giardia lamblia actin gene and the phylogeny of eukaryotes. J Mol Evol (1995) 1.04
Structural plasticity in RNA and its role in the regulation of protein translation in coliphage Q beta. J Mol Biol (1998) 1.04
Self-association of the cardiac fatty acid binding protein. Influence on membrane-bound, fatty acid dependent enzymes. Biochemistry (1983) 0.94
Fluorescence decay kinetics of the tryptophyl residues of myoglobin: effect of heme ligation and evidence for discrete lifetime components. Biochemistry (1990) 0.94
The hepatitis B virus pregenome: prediction of RNA structure and implications for the emergence of deletions. Intervirology (2000) 0.87
A new site-specific endonuclease from Neisseria cinerea. FEBS Lett (1980) 0.87
Heterogeneity of the sympathetic innervation of rat interscapular brown adipose tissue via intercostal nerves. Can J Physiol Pharmacol (1982) 0.86
A computer method for finding common base paired helices in aligned sequences: application to the analysis of random sequences. Nucleic Acids Res (1991) 0.81
Effect of spermidine on the conformation of bacteriophage MS2 RNA. Electron microscopy and computer modeling. J Mol Biol (1985) 0.81
Analyses of fission scars as permanent records of cell division in Schizosaccharomyces pombe. J Theor Biol (1980) 0.79
The primary structure of the ribosomal A-protein (L12) from the halophilic eubacterium Haloanaerobium praevalens. Biochimie (1987) 0.79
Resolution of heterogeneous fluorescence into component decay-associated excitation spectra. Application to subtilisins. Biophys J (1990) 0.79
A new vitamin E analogue more active than alpha-tocopherol in the rat curative myopathy bioassay. FEBS Lett (1986) 0.78
The primary structure of the ribosomal A-protein (L12) from the moderate halophile NRCC 41227. Biochem Cell Biol (1986) 0.77
Mycobacterium fortuitum osteomyelitis of the cuboid after nail puncture wound. Pediatr Infect Dis J (2000) 0.77
The measurement of rectal and testis temperature in conscious mice, with observations on the effect of direct heating. Phys Med Biol (1980) 0.75
Equivalency of linear least squares curve fitting and reciprocal functions in protein circular dichroic spectra analysis. Biophys Chem (1977) 0.75
[The epidemiology and clinical features of Legionella pneumonia (LP) in patients older than 60 years old who were hospitalized with pneumonia in northern Israel]. Harefuah (2002) 0.75
Large-scale selection synchrony of Tetrahymena thermophila. J Cell Sci (1986) 0.75
Estimation of meiosis and sporulation efficiencies in the fission yeast by ascus analysis. Genet Res (1979) 0.75