Published in Nature on July 06, 2000
Significance analysis of time course microarray experiments. Proc Natl Acad Sci U S A (2005) 8.65
Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p. Mol Biol Cell (2001) 6.39
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae. J Biol (2006) 5.57
Integrative analysis of cell cycle control in budding yeast. Mol Biol Cell (2004) 4.77
Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol (2008) 4.34
Polo-like kinases: conservation and divergence in their functions and regulation. Nat Rev Mol Cell Biol (2009) 4.09
Discovery of biological networks from diverse functional genomic data. Genome Biol (2005) 3.73
The Forkhead transcription factor Hcm1 regulates chromosome segregation genes and fills the S-phase gap in the transcriptional circuitry of the cell cycle. Genes Dev (2006) 3.58
Global control of cell-cycle transcription by coupled CDK and network oscillators. Nature (2008) 3.32
Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae. Genes Dev (2002) 3.27
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The cell cycle-regulated genes of Schizosaccharomyces pombe. PLoS Biol (2005) 2.86
Environmental sensing and signal transduction pathways regulating morphopathogenic determinants of Candida albicans. Microbiol Mol Biol Rev (2007) 2.71
Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle. Genes Dev (2002) 2.52
Genomic evidence for a complete sexual cycle in Candida albicans. Proc Natl Acad Sci U S A (2001) 2.52
Identifying cooperativity among transcription factors controlling the cell cycle in yeast. Nucleic Acids Res (2003) 2.50
Explicit equilibrium modeling of transcription-factor binding and gene regulation. Genome Biol (2005) 2.50
Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algorithm to time course microarray and genome-wide chromatin immunoprecipitation data. BMC Genomics (2008) 2.27
Snf1 protein kinase and the repressors Nrg1 and Nrg2 regulate FLO11, haploid invasive growth, and diploid pseudohyphal differentiation. Mol Cell Biol (2002) 2.20
Identifying combinatorial regulation of transcription factors and binding motifs. Genome Biol (2004) 2.12
Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes. Proc Natl Acad Sci U S A (2003) 2.10
Interacting models of cooperative gene regulation. Proc Natl Acad Sci U S A (2004) 2.09
Control of cyclin G2 mRNA expression by forkhead transcription factors: novel mechanism for cell cycle control by phosphoinositide 3-kinase and forkhead. Mol Cell Biol (2004) 1.76
A competitive transcription factor binding mechanism determines the timing of late cell cycle-dependent gene expression. Mol Cell (2010) 1.74
An overview of Cdk1-controlled targets and processes. Cell Div (2010) 1.66
Statistical resynchronization and Bayesian detection of periodically expressed genes. Nucleic Acids Res (2004) 1.64
Inferring transcriptional modules from ChIP-chip, motif and microarray data. Genome Biol (2006) 1.64
Mechanisms controlling differential promoter-occupancy by the yeast forkhead proteins Fkh1p and Fkh2p: implications for regulating the cell cycle and differentiation. Genes Dev (2001) 1.58
A forkhead transcription factor is important for true hyphal as well as yeast morphogenesis in Candida albicans. Eukaryot Cell (2002) 1.56
High functional overlap between MluI cell-cycle box binding factor and Swi4/6 cell-cycle box binding factor in the G1/S transcriptional program in Saccharomyces cerevisiae. Genetics (2005) 1.51
The forkhead transcription factor FoxI1 remains bound to condensed mitotic chromosomes and stably remodels chromatin structure. Mol Cell Biol (2006) 1.47
Regulation of cell cycle-specific gene expression through cyclin-dependent kinase-mediated phosphorylation of the forkhead transcription factor Fkh2p. Mol Cell Biol (2004) 1.46
Recruitment of Thr 319-phosphorylated Ndd1p to the FHA domain of Fkh2p requires Clb kinase activity: a mechanism for CLB cluster gene activation. Genes Dev (2003) 1.45
Polo kinase controls cell-cycle-dependent transcription by targeting a coactivator protein. Nature (2006) 1.42
The yeast pafl-rNA polymerase II complex is required for full expression of a subset of cell cycle-regulated genes. Eukaryot Cell (2002) 1.40
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Genetic analysis reveals that FLO11 upregulation and cell polarization independently regulate invasive growth in Saccharomyces cerevisiae. Genetics (2000) 1.33
Forkhead proteins control the outcome of transcription factor binding by antiactivation. EMBO J (2007) 1.33
Candida albicans transcription factor Ace2 regulates metabolism and is required for filamentation in hypoxic conditions. Eukaryot Cell (2006) 1.33
A model of yeast cell-cycle regulation based on multisite phosphorylation. Mol Syst Biol (2010) 1.33
Disruption of yeast forkhead-associated cell cycle transcription by oxidative stress. Mol Biol Cell (2004) 1.32
Xbp1-mediated repression of CLB gene expression contributes to the modifications of yeast cell morphology and cell cycle seen during nitrogen-limited growth. Mol Cell Biol (2001) 1.31
Role of the alpha-glucanase Agn1p in fission-yeast cell separation. Mol Biol Cell (2004) 1.31
The regulation of filamentous growth in yeast. Genetics (2012) 1.29
Inferring yeast cell cycle regulators and interactions using transcription factor activities. BMC Genomics (2005) 1.26
Molecular determinants of the cell-cycle regulated Mcm1p-Fkh2p transcription factor complex. Nucleic Acids Res (2003) 1.26
Characterization of the ECB binding complex responsible for the M/G(1)-specific transcription of CLN3 and SWI4. Mol Cell Biol (2002) 1.25
Assessing clusters and motifs from gene expression data. Genome Res (2001) 1.23
Location, location, location: it's all in the timing for replication origins. Genes Dev (2013) 1.23
Snf1 kinases with different beta-subunit isoforms play distinct roles in regulating haploid invasive growth. Mol Cell Biol (2003) 1.22
Impairment of the TFIIH-associated CDK-activating kinase selectively affects cell cycle-regulated gene expression in fission yeast. Mol Biol Cell (2005) 1.21
Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes. Nucleic Acids Res (2004) 1.21
Recruitment of Cln3 cyclin to promoters controls cell cycle entry via histone deacetylase and other targets. PLoS Biol (2009) 1.20
Ace2p controls the expression of genes required for cell separation in Schizosaccharomyces pombe. Mol Biol Cell (2005) 1.18
Saccharomyces forkhead protein Fkh1 regulates donor preference during mating-type switching through the recombination enhancer. Genes Dev (2002) 1.16
Relationship between gene co-expression and probe localization on microarray slides. BMC Genomics (2003) 1.16
The forkhead transcription factor Fkh2 regulates the cell division cycle of Schizosaccharomyces pombe. Eukaryot Cell (2004) 1.15
Regulation of the yeast Ace2 transcription factor during the cell cycle. J Biol Chem (2008) 1.12
Mitotic exit and separation of mother and daughter cells. Genetics (2012) 1.10
Ubiquitination of Cdc20 by the APC occurs through an intramolecular mechanism. Curr Biol (2011) 1.10
Plo1(+) regulates gene transcription at the M-G(1) interval during the fission yeast mitotic cell cycle. EMBO J (2002) 1.10
Activation of the G2/M-specific gene CLB2 requires multiple cell cycle signals. Mol Cell Biol (2007) 1.09
The Isw2 chromatin-remodeling ATPase cooperates with the Fkh2 transcription factor to repress transcription of the B-type cyclin gene CLB2. Mol Cell Biol (2007) 1.09
Enhanced cell polarity in mutants of the budding yeast cyclin-dependent kinase Cdc28p. Mol Biol Cell (2001) 1.09
Comparative developmental expression profiling of two C. elegans isolates. PLoS One (2008) 1.08
Principal components analysis based methodology to identify differentially expressed genes in time-course microarray data. BMC Bioinformatics (2008) 1.06
Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification. BMC Bioinformatics (2005) 1.05
Cell cycle programs of gene expression control morphogenetic protein localization. J Cell Biol (2000) 1.04
Spt3 plays opposite roles in filamentous growth in Saccharomyces cerevisiae and Candida albicans and is required for C. albicans virulence. Genetics (2002) 1.04
Critical roles for a genetic code alteration in the evolution of the genus Candida. EMBO J (2007) 1.04
The checkpoint kinase Hsl1p is activated by Elm1p-dependent phosphorylation. Mol Biol Cell (2008) 1.04
Mitotic phosphorylation of chromosomal protein HMGN1 inhibits nuclear import and promotes interaction with 14.3.3 proteins. Mol Cell Biol (2002) 1.04
Topology and control of the cell-cycle-regulated transcriptional circuitry. Genetics (2014) 1.03
Mcm1p-induced DNA bending regulates the formation of ternary transcription factor complexes. Mol Cell Biol (2003) 1.02
Analyzing the dose-dependence of the Saccharomyces cerevisiae global transcriptional response to methyl methanesulfonate and ionizing radiation. BMC Genomics (2006) 1.02
Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation. Mol Syst Biol (2009) 1.01
Cell cycle-dependent regulation of the forkhead transcription factor FOXK2 by CDK·cyclin complexes. J Biol Chem (2010) 1.01
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Functional interactions between the Forkhead transcription factor FOXK1 and the MADS-box protein SRF. Nucleic Acids Res (2007) 0.99
Adenovirus type 5 E1A and E6 proteins of low-risk cutaneous beta-human papillomaviruses suppress cell transformation through interaction with FOXK1/K2 transcription factors. J Virol (2010) 0.97
Pathocycles: Ustilago maydis as a model to study the relationships between cell cycle and virulence in pathogenic fungi. Mol Genet Genomics (2006) 0.97
Cell cycle population effects in perturbation studies. Mol Syst Biol (2014) 0.95
Transcription factor binding site positioning in yeast: proximal promoter motifs characterize TATA-less promoters. PLoS One (2011) 0.95
Validation and functional annotation of expression-based clusters based on gene ontology. BMC Bioinformatics (2006) 0.94
PTC1 is required for vacuole inheritance and promotes the association of the myosin-V vacuole-specific receptor complex. Mol Biol Cell (2008) 0.94
Yeast recombination enhancer is stimulated by transcription activation. Mol Cell Biol (2005) 0.92
Requirements and reasons for effective inhibition of the anaphase promoting complex activator CDH1. Mol Biol Cell (2010) 0.92
A new transcription factor for mitosis: in Schizosaccharomyces pombe, the RFX transcription factor Sak1 works with forkhead factors to regulate mitotic expression. Nucleic Acids Res (2015) 0.92
The yeast forkhead transcription factors fkh1 and fkh2 regulate lifespan and stress response together with the anaphase-promoting complex. PLoS Genet (2012) 0.92
Regulation of a transcription factor network by Cdk1 coordinates late cell cycle gene expression. EMBO J (2014) 0.92
Depletion of Aurora A leads to upregulation of FoxO1 to induce cell cycle arrest in hepatocellular carcinoma cells. Cell Cycle (2013) 0.92
A systematic screen for transcriptional regulators of the yeast cell cycle. Genetics (2008) 0.91
Conversion of a replication origin to a silencer through a pathway shared by a Forkhead transcription factor and an S phase cyclin. Mol Biol Cell (2007) 0.91
Charting gene regulatory networks: strategies, challenges and perspectives. Biochem J (2004) 0.90
The protease activity of yeast separase (esp1) is required for anaphase spindle elongation independently of its role in cleavage of cohesin. Genetics (2008) 0.90
Regulated degradation of the APC coactivator Cdc20. Cell Div (2010) 0.90
Transcription mediated insulation and interference direct gene cluster expression switches. Elife (2014) 0.90
The Yak1 protein kinase lies at the center of a regulatory cascade affecting adhesive growth and stress resistance in Saccharomyces cerevisiae. Genetics (2010) 0.90
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