Published in J Biol Chem on May 03, 2002
Hyaluronidases: their genomics, structures, and mechanisms of action. Chem Rev (2006) 2.47
Pneumococcal surface protein A contributes to secondary Streptococcus pneumoniae infection after influenza virus infection. J Infect Dis (2009) 1.56
Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens. J Biol Chem (2010) 0.98
Reductive evolution in Streptococcus agalactiae and the emergence of a host adapted lineage. BMC Genomics (2013) 0.97
Origin and diversity of alginate lyases of families PL-5 and -7 in Sphingomonas sp. strain A1. J Bacteriol (2004) 0.96
Structure of a PL17 family alginate lyase demonstrates functional similarities among exotype depolymerases. J Biol Chem (2014) 0.95
Biochemical characterization of the chondroitinase ABC I active site. Biochem J (2005) 0.95
Cloning of the Trichoderma reesei cDNA encoding a glucuronan lyase belonging to a novel polysaccharide lyase family. Appl Environ Microbiol (2008) 0.91
Preparation of the methyl ester of hyaluronan and its enzymatic degradation. Carbohydr Res (2005) 0.91
The structure of the first representative of Pfam family PF06475 reveals a new fold with possible involvement in glycolipid metabolism. Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.85
A novel hyaluronidase produced by Bacillus sp. A50. PLoS One (2014) 0.85
A polysaccharide lyase from Stenotrophomonas maltophilia with a unique, pH-regulated substrate specificity. J Biol Chem (2013) 0.81
Insight into the role of substrate-binding residues in conferring substrate specificity for the multifunctional polysaccharide lyase Smlt1473. J Biol Chem (2014) 0.80
Structures of two truncated phage-tail hyaluronate lyases from Streptococcus pyogenes serotype M1. Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.76
Conformational analysis of the Streptococcus pneumoniae hyaluronate lyase and characterization of its hyaluronan-specific carbohydrate-binding module. J Biol Chem (2014) 0.75
Engineering broad-spectrum digestion of polyuronides from an exolytic polysaccharide lyase. Biotechnol Biofuels (2016) 0.75
Hyaluronate lyase of a deep-sea Bacillus niacini. Mar Biotechnol (NY) (2015) 0.75
Functional role of R462 in the degradation of hyaluronan catalyzed by hyaluronate lyase from Streptococcus pneumoniae. J Mol Model (2015) 0.75
Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution. Science (2008) 8.04
Ligand docking and binding site analysis with PyMOL and Autodock/Vina. J Comput Aided Mol Des (2010) 2.67
Sequential N- to C-terminal SNARE complex assembly drives priming and fusion of secretory vesicles. EMBO J (2006) 2.19
Growth-associated gene expression after stroke: evidence for a growth-promoting region in peri-infarct cortex. Exp Neurol (2005) 2.08
Predicting free energy changes using structural ensembles. Nat Methods (2009) 1.93
Scrutinizing molecular mechanics force fields on the submicrosecond timescale with NMR data. Biophys J (2010) 1.75
Mechanism of selectivity in aquaporins and aquaglyceroporins. Proc Natl Acad Sci U S A (2008) 1.67
Structure and function of water channels. Curr Opin Struct Biol (2002) 1.55
Quaternary ammonium compounds as water channel blockers. Specificity, potency, and site of action. J Biol Chem (2006) 1.46
Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations. Biophys J (2008) 1.43
Crystal structure of a yeast aquaporin at 1.15 angstrom reveals a novel gating mechanism. PLoS Biol (2009) 1.41
Protein thermostability calculations using alchemical free energy simulations. Biophys J (2010) 1.33
Self-consistent residual dipolar coupling based model-free analysis for the robust determination of nanosecond to microsecond protein dynamics. J Biomol NMR (2008) 1.33
The PA14 domain, a conserved all-beta domain in bacterial toxins, enzymes, adhesins and signaling molecules. Trends Biochem Sci (2004) 1.32
Computational electrophysiology: the molecular dynamics of ion channel permeation and selectivity in atomistic detail. Biophys J (2011) 1.30
Does CO2 permeate through aquaporin-1? Biophys J (2006) 1.28
Detection of functional modes in protein dynamics. PLoS Comput Biol (2009) 1.27
Geometry-based sampling of conformational transitions in proteins. Structure (2007) 1.26
Speeding up parallel GROMACS on high-latency networks. J Comput Chem (2007) 1.23
Acyl chain order parameter profiles in phospholipid bilayers: computation from molecular dynamics simulations and comparison with 2H NMR experiments. Eur Biophys J (2007) 1.14
Functional dynamics in the voltage-dependent anion channel. Proc Natl Acad Sci U S A (2010) 1.13
Normal modes and essential dynamics. Methods Mol Biol (2008) 1.12
Vacuolar protein sorting: two different functional states of the AAA-ATPase Vps4p. J Mol Biol (2008) 1.09
Short-range order and collective dynamics of DMPC bilayers: a comparison between molecular dynamics simulations, X-ray, and neutron scattering experiments. Biophys J (2007) 1.07
Kinetics of conformational sampling in ubiquitin. Angew Chem Int Ed Engl (2011) 1.07
Alternative splicing of SNAP-25 regulates secretion through nonconservative substitutions in the SNARE domain. Mol Biol Cell (2005) 1.06
Secondary structure propensities in peptide folding simulations: a systematic comparison of molecular mechanics interaction schemes. Biophys J (2009) 1.06
Aquaporin-9 protein is the primary route of hepatocyte glycerol uptake for glycerol gluconeogenesis in mice. J Biol Chem (2011) 1.04
Ubiquitin dynamics in complexes reveal molecular recognition mechanisms beyond induced fit and conformational selection. PLoS Comput Biol (2012) 1.04
β-Barrel mobility underlies closure of the voltage-dependent anion channel. Structure (2012) 1.04
The atomistic mechanism of conformational transition in adenylate kinase: a TEE-REX molecular dynamics study. Structure (2008) 1.03
Structural flexibility in Trypanosoma brucei enolase revealed by X-ray crystallography and molecular dynamics. FEBS J (2007) 1.03
Dynamics and energetics of permeation through aquaporins. What do we learn from molecular dynamics simulations? Handb Exp Pharmacol (2009) 1.02
Voltage-regulated water flux through aquaporin channels in silico. Biophys J (2010) 1.01
Determinants of water permeability through nanoscopic hydrophilic channels. Biophys J (2009) 1.01
Conformational transitions upon ligand binding: holo-structure prediction from apo conformations. PLoS Comput Biol (2010) 1.01
Structure and mechanism of action of a cofactor-dependent phosphoglycerate mutase homolog from Bacillus stearothermophilus with broad specificity phosphatase activity. J Mol Biol (2002) 1.00
Insights into the catalytic mechanism of cofactor-independent phosphoglycerate mutase from X-ray crystallography, simulated dynamics and molecular modeling. J Mol Biol (2003) 1.00
NGF, BDNF, NT-3, and GDNF mRNA expression in rat skeletal muscle following denervation and sensory protection. J Neurotrauma (2004) 0.99
Molecular driving forces defining lipid positions around aquaporin-0. Proc Natl Acad Sci U S A (2012) 0.99
S-nitrosylation of syntaxin 1 at Cys(145) is a regulatory switch controlling Munc18-1 binding. Biochem J (2008) 0.97
Potentials of mean force and permeabilities for carbon dioxide, ammonia, and water flux across a Rhesus protein channel and lipid membranes. J Am Chem Soc (2010) 0.97
Inhibition of trypsin by cowpea thionin: characterization, molecular modeling, and docking. Proteins (2002) 0.95
Mobility of a one-dimensional confined file of water molecules as a function of file length. Phys Rev Lett (2006) 0.95
Toward a consensus model of the HERG potassium channel. ChemMedChem (2010) 0.95
Computational analysis of local membrane properties. J Comput Aided Mol Des (2013) 0.94
The 4.5 A structure of human AQP2. J Mol Biol (2005) 0.94
Partial least-squares functional mode analysis: application to the membrane proteins AQP1, Aqy1, and CLC-ec1. Biophys J (2012) 0.94
A designed conformational shift to control protein binding specificity. Angew Chem Int Ed Engl (2014) 0.93
Ethnic differences in body composition and obesity related risk factors: study in Chinese and white males living in China. PLoS One (2011) 0.92
The molecular mechanism of toxin-induced conformational changes in a potassium channel: relation to C-type inactivation. Structure (2008) 0.92
Discovery of novel human aquaporin-1 blockers. ACS Chem Biol (2012) 0.92
Molecular dynamics simulations of protein G challenge NMR-derived correlated backbone motions. Angew Chem Int Ed Engl (2005) 0.91
Crystal structure and functional mechanism of a human antimicrobial membrane channel. Proc Natl Acad Sci U S A (2013) 0.91
Population shuffling of protein conformations. Angew Chem Int Ed Engl (2014) 0.91
Rotational and hinge dynamics of discoidal high density lipoproteins probed by interchain disulfide bond formation. Biochim Biophys Acta (2011) 0.90
Invariance of single-file water mobility in gramicidin-like peptidic pores as function of pore length. Biophys J (2007) 0.90
Residual dipolar couplings as a tool to study molecular recognition of ubiquitin. Biochem Soc Trans (2008) 0.90
Is TEA an inhibitor for human Aquaporin-1? Pflugers Arch (2008) 0.90
Dynamics and energetics of solute permeation through the Plasmodium falciparum aquaglyceroporin. Phys Chem Chem Phys (2010) 0.88
Structure and flexibility of Streptococcus agalactiae hyaluronate lyase complex with its substrate. Insights into the mechanism of processive degradation of hyaluronan. J Biol Chem (2002) 0.88
Driving forces and structural determinants of steric zipper peptide oligomer formation elucidated by atomistic simulations. J Mol Biol (2012) 0.88
Spontaneous quaternary and tertiary T-R transitions of human hemoglobin in molecular dynamics simulation. PLoS Comput Biol (2010) 0.86
Structure and molecular mechanism of Bacillus anthracis cofactor-independent phosphoglycerate mutase: a crucial enzyme for spores and growing cells of Bacillus species. Biophys J (2006) 0.85
The identification of novel, high affinity AQP9 inhibitors in an intracellular binding site. Mol Membr Biol (2013) 0.85
Microarray analysis of gender- and parasite-specific gene transcription in Strongyloides ratti. Int J Parasitol (2008) 0.85
Towards computational specificity screening of DNA-binding proteins. Nucleic Acids Res (2011) 0.85
pmx: Automated protein structure and topology generation for alchemical perturbations. J Comput Chem (2014) 0.84
Atomic contacts in protein structures. A detailed analysis of atomic radii, packing, and overlaps. Proteins (2007) 0.84
Molecular dynamics simulations using temperature-enhanced essential dynamics replica exchange. Biophys J (2007) 0.84
The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae): response to salinity examined by 454 sequencing. BMC Genomics (2011) 0.84
Ligand-release pathways in the pheromone-binding protein of Bombyx mori. Structure (2006) 0.83
Structural genomics of Caenorhabditis elegans: crystal structure of the tropomodulin C-terminal domain. Proteins (2004) 0.83
Phosphorylation of rat aquaporin-4 at Ser(111) is not required for channel gating. Glia (2013) 0.83
Computer simulations of structure-activity relationships for HERG channel blockers. Biochemistry (2011) 0.82
Mapping the conformational dynamics and pathways of spontaneous steric zipper Peptide oligomerization. PLoS One (2011) 0.82
Structure and enzyme properties of Zabrotes subfasciatus alpha-amylase. Arch Insect Biochem Physiol (2006) 0.81
Use of phage display to select novel cystatins specific for Acanthoscelides obtectus cysteine proteinases. Biochim Biophys Acta (2003) 0.81
Alternate structural conformations of Streptococcus pneumoniae hyaluronan lyase: insights into enzyme flexibility and underlying molecular mechanism of action. J Mol Biol (2006) 0.81
[Quick identification of sun-dried and sulfur-fumigated angelicae sinensis radix by Fourier transform infrared spectroscopy]. Zhongguo Zhong Yao Za Zhi (2012) 0.81
Response of the Strongyloides ratti transcriptome to host immunological environment. Int J Parasitol (2010) 0.81
Probing conformational disorder in neurotensin by two-dimensional solid-state NMR and comparison to molecular dynamics simulations. Biophys J (2005) 0.81
A molecular switch driving inactivation in the cardiac K+ channel HERG. PLoS One (2012) 0.81
Monomorphic subtelomeric DNA in the filamentous fungus, Metarhizium anisopliae,contains a RecQ helicase-like gene. Mol Genet Genomics (2005) 0.81
[Analysis of harmful heavy metals, sulfur and main trace elements from Paeoniae Radix Alba before and after sulfur-fumigated process by ICP-AES method]. Zhongguo Zhong Yao Za Zhi (2011) 0.81
Probing the energy landscape of activation gating of the bacterial potassium channel KcsA. PLoS Comput Biol (2013) 0.81
Protein production and crystallization at SECSG -- an overview. J Struct Funct Genomics (2005) 0.80
Binding of glutamate to the umami receptor. Biophys Chem (2010) 0.80
Design of peptide-membrane interactions to modulate single-file water transport through modified gramicidin channels. Biophys J (2012) 0.80
Spontaneous aggregation of the insulin-derived steric zipper peptide VEALYL results in different aggregation forms with common features. J Mol Biol (2014) 0.79
Domain motions of hyaluronan lyase underlying processive hyaluronan translocation. Proteins (2009) 0.79
Overlapping binding sites for trypsin and papain on a Kunitz-type proteinase inhibitor from Prosopis juliflora. Proteins (2002) 0.79
The thermodynamic influence of trapped water molecules on a protein-ligand interaction. Angew Chem Int Ed Engl (2009) 0.79
Not only enthalpy: large entropy contribution to ion permeation barriers in single-file channels. Biophys J (2008) 0.79
Collective dynamics underlying allosteric transitions in hemoglobin. PLoS Comput Biol (2013) 0.79
Ultrahigh quantum efficiency of CuO nanoparticle decorated In2Ge2O7 nanobelt deep-ultraviolet photodetectors. Nanoscale (2012) 0.79
ribB and ribBA genes from Acidithiobacillus ferrooxidans: expression levels under different growth conditions and phylogenetic analysis. Res Microbiol (2008) 0.78
Investigation of the chemical compositions in tobacco of different origins and maturities at harvest by GC-MS and HPLC-PDA-QTOF-MS. J Agric Food Chem (2014) 0.77
Structural genomics of Caenorhabditis elegans: triosephosphate isomerase. Proteins (2003) 0.77
Optimal superpositioning of flexible molecule ensembles. Biophys J (2013) 0.77